Wall clock time and date at job start Sat Apr 11 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.66508 * 2 1 4 4 C 1.42271 * 103.92329 * 180.11185 * 3 2 1 5 5 C 1.48330 * 126.93878 * 179.85811 * 4 3 2 6 6 O 1.21499 * 119.99937 * 353.63648 * 5 4 3 7 7 N 1.34777 * 119.99962 * 173.64331 * 5 4 3 8 8 C 1.46499 * 120.00208 * 3.44781 * 7 5 4 9 9 C 1.46504 * 119.99903 * 183.45316 * 7 5 4 10 10 C 1.52999 * 109.47214 * 89.99479 * 9 7 5 11 11 H 1.09000 * 109.47257 * 305.00009 * 10 9 7 12 12 O 1.42895 * 109.46839 * 65.00096 * 10 9 7 13 13 C 1.53006 * 109.46693 * 184.99943 * 10 9 7 14 14 N 1.46897 * 109.46702 * 180.02562 * 13 10 9 15 15 C 1.46896 * 111.00003 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.47304 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00120 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99997 * 180.02562 * 16 15 14 19 19 C 1.37091 * 119.99949 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99985 * 359.97438 * 19 18 16 21 21 C 1.38958 * 120.00169 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99743 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47372 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47065 * 120.00000 * 23 21 19 26 26 H 1.48501 * 109.47183 * 239.99737 * 23 21 19 27 27 N 1.30984 * 106.12330 * 359.59383 * 4 3 2 28 28 O 1.20912 * 111.43629 * 0.26230 * 27 4 3 29 29 H 1.09002 * 109.46782 * 180.32598 * 1 2 3 30 30 H 1.08996 * 109.46810 * 300.32462 * 1 2 3 31 31 H 1.08991 * 109.47576 * 60.32637 * 1 2 3 32 32 H 1.08005 * 128.03808 * 359.96910 * 3 2 1 33 33 H 1.08993 * 109.46944 * 84.24552 * 8 7 5 34 34 H 1.08997 * 109.46990 * 204.25089 * 8 7 5 35 35 H 1.09000 * 109.46737 * 324.24852 * 8 7 5 36 36 H 1.09003 * 109.46495 * 209.99640 * 9 7 5 37 37 H 1.09002 * 109.47086 * 329.99258 * 9 7 5 38 38 H 0.96708 * 114.00372 * 59.99850 * 12 10 9 39 39 H 1.08995 * 109.46873 * 299.99927 * 13 10 9 40 40 H 1.08994 * 109.46873 * 60.00327 * 13 10 9 41 41 H 1.00902 * 111.00110 * 303.95261 * 14 13 10 42 42 H 1.08999 * 109.47075 * 300.00023 * 15 14 13 43 43 H 1.09000 * 109.46990 * 59.99741 * 15 14 13 44 44 H 0.97001 * 120.00082 * 359.97438 * 18 16 15 45 45 H 0.96992 * 120.00196 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5355 -0.0027 5 6 4.9075 1.2843 -0.0068 6 8 4.9037 2.4935 -0.1247 7 7 6.0752 0.6232 0.1203 8 6 6.0850 -0.8402 0.1864 9 6 7.3346 1.3682 0.1923 10 6 7.6530 1.6916 1.6535 11 1 6.8102 2.2185 2.1010 12 8 7.8903 0.4778 2.3691 13 6 8.9003 2.5752 1.7200 14 7 9.2063 2.8853 3.1229 15 6 10.4012 3.7335 3.2260 16 6 10.6829 4.0304 4.6764 17 8 9.9591 3.5801 5.5393 18 7 11.7384 4.7972 5.0147 19 6 11.9949 5.0669 6.3341 20 1 11.3510 4.6651 7.1025 21 6 13.0835 5.8570 6.6829 22 7 13.8673 6.3454 5.7480 23 14 13.4326 6.2249 8.4807 24 1 12.4094 5.5630 9.3292 25 1 14.7798 5.7126 8.8382 26 1 13.3859 7.6924 8.7037 27 7 3.4762 -0.7656 0.0049 28 8 2.3073 -1.0749 0.0065 29 1 -0.3633 -1.0277 0.0058 30 1 -0.3633 0.5189 0.8870 31 1 -0.3634 0.5087 -0.8928 32 1 2.0301 2.1272 -0.0005 33 1 6.0698 -1.2496 -0.8236 34 1 6.9861 -1.1746 0.7005 35 1 5.2064 -1.1852 0.7315 36 1 8.1382 0.7648 -0.2297 37 1 7.2411 2.2954 -0.3730 38 1 8.6283 -0.0439 2.0250 39 1 9.7430 2.0484 1.2725 40 1 8.7192 3.5011 1.1741 41 1 8.4160 3.3163 3.5787 42 1 11.2541 3.2145 2.7887 43 1 10.2308 4.6677 2.6908 44 1 12.3170 5.1577 4.3246 45 1 14.6273 6.8966 5.9914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725685986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:49 Heat of formation + Delta-G solvation = -72.461003 kcal Electronic energy + Delta-G solvation = -28599.935170 eV Core-core repulsion = 24234.457329 eV Total energy + Delta-G solvation = -4365.477841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.16151 -41.18059 -40.19377 -38.90313 -36.71296 -36.15626 -35.58847 -35.19550 -34.30292 -33.29079 -31.68003 -29.09259 -28.71183 -27.79690 -27.02353 -25.56972 -24.27093 -23.44166 -22.74476 -21.10862 -20.39146 -19.93303 -18.95738 -18.49683 -18.26086 -17.98727 -17.43583 -17.21987 -17.07530 -16.64455 -16.25101 -16.11989 -15.92542 -15.30417 -15.23754 -14.99512 -14.65275 -14.57333 -14.38450 -14.19679 -13.99755 -13.90298 -13.74761 -13.48358 -13.23753 -13.14607 -12.99653 -12.78540 -12.64100 -12.42607 -12.23750 -12.12854 -12.09654 -11.61131 -11.59265 -11.53464 -11.23661 -10.40696 -10.37710 -10.03420 -9.77214 -9.33585 -8.48604 -5.97468 -0.02253 0.62305 1.35400 1.40654 1.54930 1.56737 1.92132 2.02958 2.03885 2.28043 2.72090 2.86595 3.18382 3.38471 3.39285 3.59178 3.75996 3.88177 3.93950 4.05572 4.07875 4.25744 4.27728 4.30437 4.38475 4.46946 4.52156 4.57122 4.66110 4.70050 4.76479 4.78931 4.82569 4.92574 5.00428 5.23987 5.29806 5.39373 5.84908 6.00167 6.07465 6.27292 6.58404 6.70004 6.92073 6.99412 7.10921 7.53930 8.09937 8.69019 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.001648 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.903393 B =16988.184478 C =17352.084424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.208 4.208 4 C -0.046 4.046 5 C 0.585 3.415 6 O -0.560 6.560 7 N -0.589 5.589 8 C 0.075 3.925 9 C 0.088 3.912 10 C 0.107 3.893 11 H 0.066 0.934 12 O -0.559 6.559 13 C 0.034 3.966 14 N -0.675 5.675 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.994 3.006 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.270 1.270 27 N -0.337 5.337 28 O 0.116 5.884 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.187 0.813 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.386 0.614 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.338 0.662 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.267 -14.844 -20.149 33.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C -0.231 4.231 4 C -0.204 4.204 5 C 0.372 3.628 6 O -0.438 6.438 7 N -0.320 5.320 8 C -0.067 4.067 9 C -0.035 4.035 10 C 0.046 3.954 11 H 0.084 0.916 12 O -0.366 6.366 13 C -0.096 4.096 14 N -0.307 5.307 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.818 3.182 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.195 1.195 27 N -0.039 5.039 28 O 0.042 5.958 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.205 0.795 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.121 0.879 40 H 0.067 0.933 41 H 0.156 0.844 42 H 0.128 0.872 43 H 0.083 0.917 44 H 0.231 0.769 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.783 -15.773 -19.186 33.036 hybrid contribution 0.541 2.075 0.062 2.146 sum -21.242 -13.698 -19.125 31.696 Atomic orbital electron populations 1.20679 0.79939 1.06569 1.05991 1.25202 0.98016 0.83936 1.00036 1.22658 0.89222 1.02741 1.08497 1.23474 0.96897 0.90842 1.09144 1.17330 0.82684 0.85976 0.76801 1.90774 1.87001 1.14224 1.51752 1.47680 1.05479 1.08937 1.69865 1.22248 1.04979 0.76666 1.02808 1.22346 0.85462 0.99064 0.96579 1.22085 0.96068 0.85747 0.91476 0.91590 1.86649 1.56101 1.34211 1.59629 1.22680 0.98812 0.99583 0.88528 1.59991 1.06484 1.49154 1.15073 1.21558 0.95890 0.97205 0.91998 1.20934 0.82646 0.82053 0.92075 1.90503 1.51193 1.56512 1.52982 1.41922 1.25749 1.45166 1.08110 1.19708 1.11725 1.30553 0.84583 0.90518 1.26042 0.95097 0.95896 1.04141 1.69670 1.17041 1.34682 1.34603 0.84859 0.78219 0.78233 0.76936 1.19991 1.19410 1.19502 1.74330 0.97698 1.14931 1.16982 1.84768 1.11207 1.34346 1.65462 0.87959 0.87371 0.87022 0.79540 0.91314 0.88471 0.90422 0.85697 0.89024 0.76473 0.87946 0.93326 0.84434 0.87187 0.91706 0.76887 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.12 10.45 71.24 0.74 0.62 16 2 C -0.01 -0.10 7.47 25.01 0.19 0.08 16 3 C -0.21 -3.54 10.93 22.60 0.25 -3.30 16 4 C -0.05 -1.03 6.87 42.96 0.30 -0.73 16 5 C 0.59 15.04 7.70 86.93 0.67 15.71 16 6 O -0.56 -17.52 16.52 -3.71 -0.06 -17.58 16 7 N -0.59 -12.02 2.84 -849.64 -2.41 -14.44 16 8 C 0.07 1.19 9.43 127.77 1.20 2.39 16 9 C 0.09 1.52 5.06 86.38 0.44 1.96 16 10 C 0.11 2.40 3.42 30.60 0.10 2.50 16 11 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 12 O -0.56 -13.21 12.14 -148.98 -1.81 -15.01 16 13 C 0.03 0.75 5.35 86.31 0.46 1.21 16 14 N -0.68 -22.32 5.99 -517.95 -3.10 -25.42 16 15 C 0.07 2.30 6.17 85.56 0.53 2.83 16 16 C 0.44 21.48 7.82 87.66 0.69 22.17 16 17 O -0.63 -36.40 15.78 -3.07 -0.05 -36.45 16 18 N -0.57 -30.10 5.29 -306.97 -1.62 -31.72 16 19 C -0.34 -19.59 9.68 84.04 0.81 -18.78 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -50.08 13.05 21.67 0.28 -49.80 16 23 Si 0.99 43.71 29.55 68.60 2.03 45.73 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 N -0.34 -6.67 8.70 -49.51 -0.43 -7.10 16 28 O 0.12 1.83 11.18 71.92 0.80 2.63 16 29 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 1.20 7.23 -2.39 -0.02 1.18 16 35 H 0.08 1.47 5.36 -2.39 -0.01 1.45 16 36 H 0.13 1.24 8.07 -2.39 -0.02 1.22 16 37 H 0.09 1.74 7.38 -2.39 -0.02 1.72 16 38 H 0.39 5.88 9.04 -74.05 -0.67 5.21 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.34 12.55 8.43 -89.69 -0.76 11.80 16 42 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -81.96 388.41 -0.62 -82.58 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -1.09 Total: 40.09 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 6.84 Total: 26.48 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -7.28 Total: -128.47 kcal Atomic # 8 Polarization: -65.30 SS G_CDS: -1.11 Total: -66.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -81.96 -0.62 -82.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725685986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.116 kcal (2) G-P(sol) polarization free energy of solvation -81.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds