Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34227 * 126.28326 * 2 1 4 4 H 0.97006 * 125.73284 * 0.02776 * 3 2 1 5 5 N 1.39925 * 108.52797 * 179.80724 * 3 2 1 6 6 C 1.30532 * 108.89057 * 0.38724 * 5 3 2 7 7 Cl 1.73608 * 126.00247 * 179.88188 * 6 5 3 8 8 C 1.38072 * 126.27891 * 180.02562 * 2 1 3 9 9 C 1.47385 * 126.42441 * 359.97438 * 8 2 1 10 10 O 1.21606 * 119.99978 * 269.98394 * 9 8 2 11 11 N 1.34768 * 119.99739 * 89.98684 * 9 8 2 12 12 C 1.46498 * 119.99828 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47170 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47246 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47409 * 185.08371 * 14 13 12 16 16 H 1.09002 * 109.87227 * 55.66571 * 15 14 13 17 17 C 1.54328 * 109.88020 * 294.65023 * 15 14 13 18 18 C 1.55164 * 102.93880 * 218.38686 * 17 15 14 19 19 C 1.54899 * 101.58227 * 35.50299 * 18 17 15 20 20 N 1.47019 * 109.88706 * 176.68022 * 15 14 13 21 21 C 1.36934 * 125.64957 * 298.32091 * 20 15 14 22 22 H 1.08005 * 119.99628 * 346.79938 * 21 20 15 23 23 C 1.38808 * 120.00229 * 166.80779 * 21 20 15 24 24 N 1.31617 * 120.00306 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99980 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47166 * 60.00115 * 25 23 21 27 27 H 1.48505 * 109.47050 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47305 * 300.00047 * 25 23 21 29 29 H 1.09003 * 109.47337 * 269.95753 * 1 2 3 30 30 H 1.09000 * 109.47141 * 29.96521 * 1 2 3 31 31 H 1.09005 * 109.46847 * 149.95773 * 1 2 3 32 32 H 0.96998 * 120.00220 * 0.02562 * 11 9 8 33 33 H 1.09003 * 109.47338 * 299.99404 * 12 11 9 34 34 H 1.08998 * 109.47533 * 60.00095 * 12 11 9 35 35 H 1.08998 * 109.47221 * 300.00096 * 13 12 11 36 36 H 1.09002 * 109.47373 * 60.00386 * 13 12 11 37 37 H 1.08999 * 109.47358 * 305.09013 * 14 13 12 38 38 H 1.09002 * 109.47003 * 65.08454 * 14 13 12 39 39 H 1.08997 * 110.72036 * 336.75260 * 17 15 14 40 40 H 1.09000 * 110.72062 * 100.02862 * 17 15 14 41 41 H 1.09005 * 110.99909 * 153.58205 * 18 17 15 42 42 H 1.09000 * 111.00445 * 277.38851 * 18 17 15 43 43 H 1.09004 * 110.37124 * 81.82529 * 19 18 17 44 44 H 1.08996 * 110.36982 * 204.14723 * 19 18 17 45 45 H 0.97002 * 120.00195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0018 2.0047 0.0004 5 7 3.6339 0.6553 0.0045 6 6 3.6598 -0.6497 -0.0012 7 17 5.0842 -1.6422 -0.0017 8 6 2.3240 -1.1131 -0.0005 9 6 1.8858 -2.5203 -0.0006 10 8 1.7057 -3.1011 1.0525 11 7 1.6848 -3.1633 -1.1678 12 6 1.2498 -4.5622 -1.1679 13 6 1.0966 -5.0485 -2.6105 14 6 0.6428 -6.5097 -2.6106 15 6 0.6117 -7.0340 -4.0476 16 1 1.5872 -6.8954 -4.5138 17 6 -0.4679 -6.2843 -4.8565 18 6 -1.0716 -7.4011 -5.7486 19 6 -1.0101 -8.6242 -4.8001 20 7 0.2535 -8.4599 -4.0521 21 6 0.9717 -9.4651 -3.4615 22 1 1.9811 -9.2812 -3.1242 23 6 0.4026 -10.7203 -3.2965 24 7 -0.8276 -10.9443 -3.7072 25 14 1.3827 -12.0917 -2.4914 26 1 1.7624 -11.6861 -1.1142 27 1 0.5556 -13.3238 -2.4348 28 1 2.6094 -12.3556 -3.2856 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3633 -0.8897 -0.5145 32 1 1.8289 -2.7001 -2.0078 33 1 1.9922 -5.1737 -0.6550 34 1 0.2924 -4.6451 -0.6534 35 1 0.3540 -4.4371 -3.1232 36 1 2.0537 -4.9657 -3.1255 37 1 1.3389 -7.1064 -2.0211 38 1 -0.3544 -6.5805 -2.1764 39 1 -1.2264 -5.8677 -4.1938 40 1 -0.0178 -5.5029 -5.4688 41 1 -2.1013 -7.1694 -6.0212 42 1 -0.4617 -7.5639 -6.6372 43 1 -1.8599 -8.6181 -4.1174 44 1 -0.9912 -9.5498 -5.3753 45 1 -1.2255 -11.8214 -3.5915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731750793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = 39.046177 kcal Electronic energy + Delta-G solvation = -26628.680693 eV Core-core repulsion = 22708.747331 eV Total energy + Delta-G solvation = -3919.933363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96201 -39.33814 -37.79295 -37.18003 -35.44366 -33.20761 -32.95412 -32.24193 -31.51768 -29.37815 -28.42327 -27.58236 -24.91184 -24.16911 -22.54214 -22.39246 -21.48902 -20.17928 -19.95967 -19.10236 -18.29116 -16.81391 -16.68452 -16.19210 -15.66998 -15.59196 -15.44347 -15.01846 -14.53622 -14.28010 -13.94644 -13.70397 -13.64615 -13.56890 -12.94230 -12.78144 -12.34843 -12.28211 -12.10313 -12.01626 -11.89286 -11.66735 -11.42571 -11.15359 -11.00237 -10.78123 -10.71325 -10.52382 -10.15737 -10.05756 -9.96161 -9.90148 -9.74225 -9.57893 -9.56147 -9.21510 -9.09579 -8.53777 -6.73645 -5.69310 -3.03998 1.05470 1.06502 1.74835 2.38113 2.45061 3.22061 3.43607 3.48274 3.48949 4.00909 4.32638 4.52615 4.54183 4.77820 4.89681 5.05528 5.18822 5.22519 5.26275 5.40298 5.46973 5.49766 5.63156 5.65750 5.76182 5.88368 6.00969 6.06581 6.15174 6.30095 6.38159 6.41120 6.46512 6.47516 6.60122 6.73160 6.75622 6.79875 6.99810 7.21101 7.41434 7.59457 7.66299 7.84806 8.12044 8.34110 9.25117 9.87091 10.56338 11.42840 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002240 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.452671 B =12495.743589 C =13423.631511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.145 3.855 3 N -0.447 5.447 4 H 0.449 0.551 5 N -0.276 5.276 6 C 0.160 3.840 7 Cl 0.024 6.976 8 C -0.270 4.270 9 C 0.593 3.407 10 O -0.527 6.527 11 N -0.717 5.717 12 C 0.117 3.883 13 C -0.127 4.127 14 C -0.122 4.122 15 C 0.162 3.838 16 H 0.030 0.970 17 C -0.124 4.124 18 C -0.150 4.150 19 C 0.171 3.829 20 N -0.597 5.597 21 C -0.225 4.225 22 H 0.074 0.926 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.908 3.092 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.071 0.929 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 26.401 3.292 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.102 5.102 6 C -0.033 4.033 7 Cl 0.052 6.948 8 C -0.286 4.286 9 C 0.377 3.623 10 O -0.402 6.402 11 N -0.368 5.368 12 C -0.006 4.006 13 C -0.165 4.165 14 C -0.162 4.162 15 C 0.054 3.946 16 H 0.048 0.952 17 C -0.162 4.162 18 C -0.189 4.189 19 C 0.047 3.953 20 N -0.321 5.321 21 C -0.353 4.353 22 H 0.092 0.908 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.739 3.261 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.106 26.627 4.108 27.120 hybrid contribution 0.184 -0.775 0.140 0.809 sum 3.290 25.852 4.248 26.404 Atomic orbital electron populations 1.20653 0.85507 1.04996 1.04801 1.21444 0.94898 0.85940 0.96478 1.45851 1.03034 1.08687 1.58119 0.70512 1.77174 0.96493 1.10733 1.25764 1.22600 0.88934 0.90506 1.01255 1.98441 1.35072 1.64614 1.96680 1.19837 0.91141 0.94616 1.22988 1.17102 0.77011 0.84205 0.84032 1.90823 1.50463 1.67568 1.31355 1.46092 1.68679 1.13928 1.08114 1.21563 1.00464 0.80006 0.98523 1.21838 1.01804 0.98616 0.94291 1.22026 1.01511 0.92220 1.00442 1.20920 0.95488 0.85831 0.92312 0.95193 1.22587 0.98325 0.97128 0.98127 1.23009 0.98966 0.98259 0.98670 1.21480 0.87970 0.94376 0.91506 1.44608 1.25349 1.00052 1.62072 1.18923 0.95209 0.89271 1.31931 0.90818 1.24863 0.96158 0.98213 1.01035 1.69922 1.13332 1.22001 1.51419 0.86259 0.78841 0.81540 0.79496 1.21066 1.21665 1.21206 0.88751 0.89832 0.88719 0.76560 0.91164 0.91271 0.91710 0.91690 0.91661 0.92204 0.92064 0.92683 0.92610 0.92521 0.95954 0.91036 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.25 36.01 0.37 -0.06 16 2 C 0.14 1.08 7.29 -81.61 -0.60 0.48 16 3 N -0.45 -2.96 7.28 33.86 0.25 -2.72 16 4 H 0.45 1.21 8.96 -182.72 -1.64 -0.43 16 5 N -0.28 -2.82 12.64 33.18 0.42 -2.40 16 6 C 0.16 1.79 7.89 -16.91 -0.13 1.66 16 7 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.25 16 8 C -0.27 -2.90 5.88 -105.04 -0.62 -3.52 16 9 C 0.59 7.55 7.17 -12.54 -0.09 7.46 16 10 O -0.53 -8.87 17.11 5.27 0.09 -8.78 16 11 N -0.72 -7.75 5.55 -61.40 -0.34 -8.09 16 12 C 0.12 1.47 5.67 -4.04 -0.02 1.45 16 13 C -0.13 -1.59 5.07 -26.73 -0.14 -1.72 16 14 C -0.12 -2.10 4.69 -26.73 -0.13 -2.23 16 15 C 0.16 3.17 3.18 -66.95 -0.21 2.96 16 16 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 17 C -0.12 -2.05 5.61 -24.89 -0.14 -2.19 16 18 C -0.15 -2.79 7.08 -24.58 -0.17 -2.96 16 19 C 0.17 4.12 5.46 -2.36 -0.01 4.11 16 20 N -0.60 -14.86 3.14 -162.32 -0.51 -15.37 16 21 C -0.22 -6.17 9.75 -15.06 -0.15 -6.32 16 22 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 23 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 24 N -0.92 -26.95 10.54 55.49 0.59 -26.37 16 25 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.46 7.96 -51.93 -0.41 0.05 16 32 H 0.40 3.35 8.46 -40.82 -0.35 3.00 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.72 7.57 -51.93 -0.39 0.32 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.26 7.90 -51.93 -0.41 0.85 16 38 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 39 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.07 1.93 6.83 -51.93 -0.35 1.57 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -34.43 387.86 -10.48 -44.91 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.15 Total: -1.80 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.13 Total: -1.14 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.40 Total: -54.94 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.43 -10.48 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731750793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.960 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds