Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34227 * 126.28326 * 2 1 4 4 H 0.97006 * 125.73284 * 0.02776 * 3 2 1 5 5 N 1.39925 * 108.52797 * 179.80724 * 3 2 1 6 6 C 1.30532 * 108.89057 * 0.38724 * 5 3 2 7 7 Cl 1.73608 * 126.00247 * 179.88188 * 6 5 3 8 8 C 1.38072 * 126.27891 * 180.02562 * 2 1 3 9 9 C 1.47385 * 126.42441 * 359.97438 * 8 2 1 10 10 O 1.21606 * 119.99978 * 269.98394 * 9 8 2 11 11 N 1.34768 * 119.99739 * 89.98684 * 9 8 2 12 12 C 1.46498 * 119.99828 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47170 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47246 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47409 * 185.08371 * 14 13 12 16 16 H 1.09002 * 109.87227 * 55.66571 * 15 14 13 17 17 C 1.54328 * 109.88020 * 294.65023 * 15 14 13 18 18 C 1.55164 * 102.93880 * 218.38686 * 17 15 14 19 19 C 1.54899 * 101.58227 * 35.50299 * 18 17 15 20 20 N 1.47019 * 109.88706 * 176.68022 * 15 14 13 21 21 C 1.36934 * 125.64957 * 298.32091 * 20 15 14 22 22 H 1.08005 * 119.99628 * 346.79938 * 21 20 15 23 23 C 1.38808 * 120.00229 * 166.80779 * 21 20 15 24 24 N 1.31617 * 120.00306 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99980 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47166 * 60.00115 * 25 23 21 27 27 H 1.48505 * 109.47050 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47305 * 300.00047 * 25 23 21 29 29 H 1.09003 * 109.47337 * 269.95753 * 1 2 3 30 30 H 1.09000 * 109.47141 * 29.96521 * 1 2 3 31 31 H 1.09005 * 109.46847 * 149.95773 * 1 2 3 32 32 H 0.96998 * 120.00220 * 0.02562 * 11 9 8 33 33 H 1.09003 * 109.47338 * 299.99404 * 12 11 9 34 34 H 1.08998 * 109.47533 * 60.00095 * 12 11 9 35 35 H 1.08998 * 109.47221 * 300.00096 * 13 12 11 36 36 H 1.09002 * 109.47373 * 60.00386 * 13 12 11 37 37 H 1.08999 * 109.47358 * 305.09013 * 14 13 12 38 38 H 1.09002 * 109.47003 * 65.08454 * 14 13 12 39 39 H 1.08997 * 110.72036 * 336.75260 * 17 15 14 40 40 H 1.09000 * 110.72062 * 100.02862 * 17 15 14 41 41 H 1.09005 * 110.99909 * 153.58205 * 18 17 15 42 42 H 1.09000 * 111.00445 * 277.38851 * 18 17 15 43 43 H 1.09004 * 110.37124 * 81.82529 * 19 18 17 44 44 H 1.08996 * 110.36982 * 204.14723 * 19 18 17 45 45 H 0.97002 * 120.00195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0018 2.0047 0.0004 5 7 3.6339 0.6553 0.0045 6 6 3.6598 -0.6497 -0.0012 7 17 5.0842 -1.6422 -0.0017 8 6 2.3240 -1.1131 -0.0005 9 6 1.8858 -2.5203 -0.0006 10 8 1.7057 -3.1011 1.0525 11 7 1.6848 -3.1633 -1.1678 12 6 1.2498 -4.5622 -1.1679 13 6 1.0966 -5.0485 -2.6105 14 6 0.6428 -6.5097 -2.6106 15 6 0.6117 -7.0340 -4.0476 16 1 1.5872 -6.8954 -4.5138 17 6 -0.4679 -6.2843 -4.8565 18 6 -1.0716 -7.4011 -5.7486 19 6 -1.0101 -8.6242 -4.8001 20 7 0.2535 -8.4599 -4.0521 21 6 0.9717 -9.4651 -3.4615 22 1 1.9811 -9.2812 -3.1242 23 6 0.4026 -10.7203 -3.2965 24 7 -0.8276 -10.9443 -3.7072 25 14 1.3827 -12.0917 -2.4914 26 1 1.7624 -11.6861 -1.1142 27 1 0.5556 -13.3238 -2.4348 28 1 2.6094 -12.3556 -3.2856 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3633 -0.8897 -0.5145 32 1 1.8289 -2.7001 -2.0078 33 1 1.9922 -5.1737 -0.6550 34 1 0.2924 -4.6451 -0.6534 35 1 0.3540 -4.4371 -3.1232 36 1 2.0537 -4.9657 -3.1255 37 1 1.3389 -7.1064 -2.0211 38 1 -0.3544 -6.5805 -2.1764 39 1 -1.2264 -5.8677 -4.1938 40 1 -0.0178 -5.5029 -5.4688 41 1 -2.1013 -7.1694 -6.0212 42 1 -0.4617 -7.5639 -6.6372 43 1 -1.8599 -8.6181 -4.1174 44 1 -0.9912 -9.5498 -5.3753 45 1 -1.2255 -11.8214 -3.5915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731750793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = 15.133604 kcal Electronic energy + Delta-G solvation = -26629.717620 eV Core-core repulsion = 22708.747331 eV Total energy + Delta-G solvation = -3920.970290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65415 -40.35338 -39.39500 -37.97906 -36.62129 -34.66202 -33.81332 -33.63821 -32.34649 -31.20325 -29.56740 -28.40005 -26.61532 -25.70255 -23.53479 -23.09541 -22.62362 -21.82343 -21.04557 -20.54717 -19.02502 -18.66002 -17.59031 -17.14566 -16.95945 -16.52183 -16.37303 -16.28382 -16.00075 -15.65234 -15.44475 -14.82414 -14.48298 -14.17253 -14.08114 -13.80565 -13.65947 -13.53811 -13.33062 -13.07164 -13.02853 -12.96774 -12.83344 -12.69694 -12.63996 -12.21530 -12.02419 -11.93794 -11.78582 -11.64259 -11.50399 -11.28108 -11.16524 -11.04065 -10.62711 -10.59062 -10.11307 -9.93237 -8.75319 -7.82422 -5.17340 0.33198 0.43127 0.96801 1.45209 1.45571 1.48123 1.53960 1.82316 2.32402 2.52081 3.35708 3.46678 3.70947 3.74990 3.90298 4.00883 4.03953 4.08739 4.22062 4.30722 4.39767 4.48655 4.62678 4.64436 4.67490 4.76755 4.85360 4.86914 4.90427 5.03935 5.07152 5.09146 5.18696 5.27792 5.37867 5.43419 5.53472 5.57482 5.71735 5.75252 5.83372 5.95628 6.21771 6.30596 6.53046 7.15534 7.19958 7.85700 8.52859 9.28685 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002240 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.452671 B =12495.743589 C =13423.631511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.170 3.830 3 N -0.426 5.426 4 H 0.467 0.533 5 N -0.295 5.295 6 C 0.147 3.853 7 Cl 0.013 6.987 8 C -0.302 4.302 9 C 0.599 3.401 10 O -0.576 6.576 11 N -0.701 5.701 12 C 0.124 3.876 13 C -0.108 4.108 14 C -0.112 4.112 15 C 0.151 3.849 16 H 0.033 0.967 17 C -0.110 4.110 18 C -0.137 4.137 19 C 0.173 3.827 20 N -0.620 5.620 21 C -0.229 4.229 22 H 0.075 0.925 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.969 3.031 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.278 1.278 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.416 0.584 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.061 0.939 43 H -0.008 1.008 44 H 0.031 0.969 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 29.817 2.382 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 N -0.138 5.138 4 H 0.318 0.682 5 N -0.121 5.121 6 C -0.045 4.045 7 Cl 0.041 6.959 8 C -0.318 4.318 9 C 0.384 3.616 10 O -0.455 6.455 11 N -0.352 5.352 12 C 0.001 3.999 13 C -0.146 4.146 14 C -0.152 4.152 15 C 0.045 3.955 16 H 0.050 0.950 17 C -0.147 4.147 18 C -0.176 4.176 19 C 0.048 3.952 20 N -0.344 5.344 21 C -0.359 4.359 22 H 0.093 0.907 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.798 3.202 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.204 1.204 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.253 0.747 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.010 0.990 44 H 0.049 0.951 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.880 30.126 3.158 30.427 hybrid contribution 0.246 -1.750 0.412 1.815 sum 3.126 28.375 3.571 28.769 Atomic orbital electron populations 1.20847 0.82856 1.06623 1.05673 1.21837 0.96110 0.84923 0.93576 1.45865 1.01815 1.09619 1.56518 0.68242 1.77108 0.98445 1.10248 1.26326 1.22655 0.88817 0.90882 1.02148 1.98428 1.35723 1.65006 1.96771 1.19739 0.91596 0.94254 1.26166 1.17344 0.75913 0.84868 0.83494 1.90797 1.52722 1.68854 1.33080 1.45895 1.67702 1.13053 1.08567 1.21329 0.99495 0.80751 0.98363 1.21635 1.03153 0.95373 0.94432 1.21814 1.00037 0.95066 0.98291 1.21224 0.96745 0.83492 0.94074 0.94950 1.22585 0.97485 0.96900 0.97777 1.22878 1.01015 0.96000 0.97695 1.21290 0.86872 0.95532 0.91548 1.44922 1.25238 1.02173 1.62083 1.19251 0.95560 0.90231 1.30851 0.90731 1.25622 0.97276 1.00563 1.02431 1.70135 1.14813 1.21895 1.53050 0.85292 0.77611 0.78626 0.78689 1.20613 1.22133 1.20367 0.88089 0.86216 0.89076 0.74726 0.93364 0.91983 0.88782 0.90395 0.94646 0.93728 0.90734 0.88540 0.90027 0.91980 0.99038 0.95059 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.25 71.24 0.73 0.24 16 2 C 0.17 2.05 7.29 42.15 0.31 2.36 16 3 N -0.43 -4.44 7.28 -46.79 -0.34 -4.78 16 4 H 0.47 0.87 8.96 -213.43 -1.91 -1.04 16 5 N -0.30 -5.55 12.64 -48.95 -0.62 -6.17 16 6 C 0.15 3.16 7.89 85.66 0.68 3.84 16 7 Cl 0.01 0.29 29.19 -2.72 -0.08 0.21 16 8 C -0.30 -6.04 5.88 -20.13 -0.12 -6.16 16 9 C 0.60 14.76 7.17 86.65 0.62 15.39 16 10 O -0.58 -19.58 17.11 -4.05 -0.07 -19.65 16 11 N -0.70 -13.98 5.55 -466.42 -2.59 -16.57 16 12 C 0.12 3.00 5.67 86.38 0.49 3.49 16 13 C -0.11 -2.41 5.07 30.60 0.16 -2.25 16 14 C -0.11 -3.78 4.69 30.59 0.14 -3.64 16 15 C 0.15 5.68 3.18 45.34 0.14 5.83 16 16 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 17 C -0.11 -3.23 5.61 31.79 0.18 -3.05 16 18 C -0.14 -4.80 7.08 31.98 0.23 -4.57 16 19 C 0.17 8.48 5.46 86.79 0.47 8.95 16 20 N -0.62 -31.29 3.14 -667.46 -2.09 -33.39 16 21 C -0.23 -12.90 9.75 84.03 0.82 -12.08 16 22 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.07 -3.81 5.47 84.86 0.46 -3.35 16 24 N -0.95 -58.00 10.54 21.65 0.23 -57.77 16 25 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 26 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.09 0.59 7.96 -2.38 -0.02 0.57 16 32 H 0.42 5.77 8.46 -92.71 -0.78 4.99 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.63 7.57 -2.39 -0.02 1.61 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.03 1.38 7.90 -2.39 -0.02 1.36 16 38 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 39 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 41 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H -0.01 -0.46 8.10 -2.38 -0.02 -0.47 16 44 H 0.03 1.75 6.83 -2.39 -0.02 1.74 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -79.86 387.86 0.10 -79.75 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -1.67 Total: 4.51 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.31 Total: 4.98 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -5.41 Total: -118.67 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.07 Total: -19.65 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -79.86 0.10 -79.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731750793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.888 kcal (2) G-P(sol) polarization free energy of solvation -79.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds