Wall clock time and date at job start Sat Apr 11 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35472 * 126.43376 * 2 1 4 4 Cl 1.73602 * 127.23646 * 359.97438 * 3 2 1 5 5 C 1.41546 * 105.52064 * 180.13676 * 3 2 1 6 6 C 1.47668 * 126.45918 * 179.84025 * 5 3 2 7 7 O 1.21575 * 119.99943 * 359.71790 * 6 5 3 8 8 N 1.34776 * 119.99728 * 179.71382 * 6 5 3 9 9 C 1.46508 * 119.99573 * 174.90577 * 8 6 5 10 10 C 1.52998 * 110.01736 * 65.17568 * 9 8 6 11 11 N 1.46507 * 109.47131 * 55.17115 * 10 9 8 12 12 C 1.36930 * 119.99934 * 174.90479 * 11 10 9 13 13 H 1.07998 * 120.00389 * 0.02562 * 12 11 10 14 14 C 1.38819 * 119.99728 * 180.02562 * 12 11 10 15 15 N 1.31614 * 120.00263 * 359.72283 * 14 12 11 16 16 Si 1.86800 * 119.99786 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47276 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47287 * 119.99943 * 16 14 12 19 19 H 1.48501 * 109.47071 * 239.99882 * 16 14 12 20 20 C 1.54257 * 110.07216 * 186.59419 * 9 8 6 21 21 C 1.54886 * 104.19795 * 95.69526 * 20 9 8 22 22 C 1.54893 * 102.74625 * 37.94520 * 21 20 9 23 23 C 1.53874 * 110.03210 * 303.78295 * 9 8 6 24 24 N 1.31823 * 107.07802 * 359.57987 * 5 3 2 25 25 N 1.28470 * 110.13860 * 0.26648 * 24 5 3 26 26 C 1.46502 * 124.93391 * 180.02562 * 25 24 5 27 27 H 1.08996 * 109.47181 * 270.32663 * 1 2 3 28 28 H 1.08996 * 109.46801 * 30.32752 * 1 2 3 29 29 H 1.08996 * 109.46744 * 150.32428 * 1 2 3 30 30 H 0.96993 * 120.00337 * 354.91113 * 8 6 5 31 31 H 1.09002 * 109.47135 * 295.17411 * 10 9 8 32 32 H 1.08997 * 109.47285 * 175.17138 * 10 9 8 33 33 H 0.96993 * 119.99601 * 354.90812 * 11 10 9 34 34 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 35 35 H 1.08998 * 110.48720 * 214.37628 * 20 9 8 36 36 H 1.09010 * 110.48694 * 337.02031 * 20 9 8 37 37 H 1.08999 * 110.76039 * 279.62578 * 21 20 9 38 38 H 1.09003 * 110.76040 * 156.25627 * 21 20 9 39 39 H 1.08998 * 110.48461 * 203.37816 * 22 21 20 40 40 H 1.08995 * 110.48774 * 80.73388 * 22 21 20 41 41 H 1.09000 * 110.03407 * 359.95562 * 23 9 8 42 42 H 1.09005 * 110.02989 * 121.38262 * 23 9 8 43 43 H 1.08997 * 109.47079 * 89.97187 * 26 25 24 44 44 H 1.08998 * 109.46744 * 209.96941 * 26 25 24 45 45 H 1.08996 * 109.46846 * 329.96637 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7559 -0.0006 5 6 3.6338 0.5847 -0.0033 6 6 4.8774 1.3809 -0.0078 7 8 4.8216 2.5953 -0.0143 8 7 6.0742 0.7612 -0.0048 9 6 7.3058 1.5461 -0.1219 10 6 7.4735 2.4436 1.1057 11 7 7.4282 1.6244 2.3195 12 6 7.6618 2.1971 3.5411 13 1 7.8790 3.2528 3.6100 14 6 7.6194 1.4207 4.6911 15 7 7.3493 0.1353 4.6078 16 14 7.9373 2.2022 6.3578 17 1 8.2091 3.6514 6.1813 18 1 6.7443 2.0237 7.2239 19 1 9.1118 1.5525 6.9931 20 6 8.5213 0.6065 -0.2597 21 6 8.7575 0.5124 -1.7875 22 6 8.4578 1.9537 -2.2691 23 6 7.2653 2.4027 -1.3996 24 7 3.5456 -0.7306 0.0043 25 7 2.3126 -1.0912 0.0062 26 6 1.8446 -2.4795 0.0147 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8870 -0.5189 29 1 -0.3633 -0.8929 -0.5088 30 1 6.1203 -0.2044 0.0750 31 1 6.6678 3.1773 1.1323 32 1 8.4325 2.9589 1.0508 33 1 7.2329 0.6764 2.2576 34 1 7.3200 -0.4073 5.4113 35 1 9.3928 1.0350 0.2354 36 1 8.2923 -0.3765 0.1521 37 1 8.0673 -0.1982 -2.2421 38 1 9.7909 0.2403 -2.0027 39 1 8.1824 1.9540 -3.3237 40 1 9.3189 2.5998 -2.0985 41 1 6.3298 2.2338 -1.9329 42 1 7.3652 3.4578 -1.1450 43 1 1.7288 -2.8176 1.0444 44 1 0.8851 -2.5425 -0.4985 45 1 2.5717 -3.1111 -0.4956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732236046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:07 Heat of formation + Delta-G solvation = 45.689962 kcal Electronic energy + Delta-G solvation = -28368.699294 eV Core-core repulsion = 24449.054027 eV Total energy + Delta-G solvation = -3919.645267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.72853 -39.80391 -37.32023 -36.34527 -34.19094 -33.73796 -32.90241 -32.56072 -30.88118 -28.57473 -28.25257 -27.47488 -26.84923 -24.41224 -23.16235 -22.06904 -21.06325 -20.56332 -19.82870 -18.62609 -17.32509 -16.96067 -16.59455 -16.44904 -15.77960 -14.92672 -14.85804 -14.37691 -14.26044 -14.04501 -13.82726 -13.56062 -13.43006 -13.11747 -13.07354 -12.95120 -12.71016 -12.56013 -12.50976 -11.76442 -11.72763 -11.45652 -11.36527 -11.05251 -10.86324 -10.78901 -10.76205 -10.59184 -10.49024 -10.34547 -10.31031 -9.91645 -9.59459 -9.41355 -9.15030 -8.71292 -8.66180 -8.38731 -6.73522 -5.64157 -2.89715 1.60288 1.89536 1.95911 2.71531 3.50678 3.54863 3.56754 3.59106 3.79746 4.27356 4.38502 4.68284 4.68879 4.77672 4.81836 4.93121 4.95319 5.07988 5.15900 5.23146 5.37161 5.51102 5.57416 5.65119 5.69001 5.75066 5.78787 5.89632 6.01094 6.05475 6.07858 6.13938 6.31081 6.40624 6.51544 6.56280 6.60288 6.65540 6.71608 7.05401 7.26313 7.71656 7.83592 8.09387 8.55365 8.73830 9.66777 10.26782 10.62629 11.59274 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008394 B = 0.004440 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.810804 B = 6304.817834 C = 7808.964786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.018 3.982 3 C -0.102 4.102 4 Cl -0.011 7.011 5 C 0.012 3.988 6 C 0.605 3.395 7 O -0.511 6.511 8 N -0.696 5.696 9 C 0.171 3.829 10 C 0.145 3.855 11 N -0.726 5.726 12 C -0.226 4.226 13 H 0.069 0.931 14 C -0.018 4.018 15 N -0.936 5.936 16 Si 0.903 3.097 17 H -0.281 1.281 18 H -0.294 1.294 19 H -0.293 1.293 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.117 4.117 24 N -0.246 5.246 25 N -0.281 5.281 26 C 0.088 3.912 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.401 0.599 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.382 0.618 34 H 0.251 0.749 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 -5.844 -16.450 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.139 4.139 4 Cl 0.018 6.982 5 C -0.150 4.150 6 C 0.388 3.612 7 O -0.384 6.384 8 N -0.347 5.347 9 C 0.085 3.915 10 C 0.016 3.984 11 N -0.370 5.370 12 C -0.358 4.358 13 H 0.087 0.913 14 C -0.213 4.213 15 N -0.586 5.586 16 Si 0.735 3.265 17 H -0.206 1.206 18 H -0.221 1.221 19 H -0.221 1.221 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.156 4.156 24 N -0.081 5.081 25 N -0.070 5.070 26 C -0.052 4.052 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.236 0.764 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.216 0.784 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.369 -5.766 -16.340 20.725 hybrid contribution -0.482 0.234 1.244 1.355 sum -11.851 -5.533 -15.096 19.974 Atomic orbital electron populations 1.20371 0.86032 1.03966 1.03731 1.21049 0.95292 0.85896 1.08434 1.20498 0.92142 0.87580 1.13712 1.98346 1.90790 1.11947 1.97111 1.22030 0.94589 0.89332 1.09038 1.16600 0.81322 0.86443 0.76841 1.90802 1.86307 1.12271 1.48975 1.45850 1.04664 1.10587 1.73649 1.21270 0.82875 0.91670 0.95700 1.21176 0.98566 0.93370 0.85255 1.42224 1.85423 1.08452 1.00888 1.19298 1.38634 0.93458 0.84403 0.91300 1.24669 1.03332 0.95715 0.97548 1.69669 1.56824 1.04771 1.27342 0.86148 0.77222 0.78276 0.84826 1.20609 1.22111 1.22072 1.22578 0.97672 0.99632 0.95583 1.22533 1.00881 0.96836 0.96011 1.22379 0.98362 0.96564 0.98838 1.22418 0.98272 1.00176 0.94742 1.73644 1.01581 1.13939 1.18921 1.45225 1.02708 1.07246 1.51784 1.22195 1.01536 0.76619 1.04843 0.89869 0.89388 0.90849 0.76380 0.94284 0.95582 0.78450 0.93903 0.89563 0.90989 0.91858 0.91712 0.92136 0.91589 0.91457 0.90794 0.89326 0.88661 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.99 36.00 0.36 -0.27 16 2 C 0.02 0.22 6.94 -81.90 -0.57 -0.34 16 3 C -0.10 -1.63 6.79 -39.31 -0.27 -1.89 16 4 Cl -0.01 -0.17 27.93 -51.86 -1.45 -1.61 16 5 C 0.01 0.21 7.13 -82.76 -0.59 -0.38 16 6 C 0.60 11.85 6.87 -12.41 -0.09 11.77 16 7 O -0.51 -11.09 13.14 5.30 0.07 -11.02 16 8 N -0.70 -12.56 4.50 -47.56 -0.21 -12.78 16 9 C 0.17 3.03 0.57 -130.70 -0.07 2.95 16 10 C 0.14 3.23 4.64 -4.04 -0.02 3.21 16 11 N -0.73 -19.29 5.27 -59.91 -0.32 -19.61 16 12 C -0.23 -6.68 9.99 -15.06 -0.15 -6.83 16 13 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 14 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 15 N -0.94 -29.17 13.06 55.49 0.72 -28.45 16 16 Si 0.90 23.49 29.55 -169.99 -5.02 18.46 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 19 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 20 C -0.12 -1.84 5.74 -25.08 -0.14 -1.98 16 21 C -0.13 -1.57 6.91 -24.74 -0.17 -1.74 16 22 C -0.12 -1.56 6.83 -25.07 -0.17 -1.74 16 23 C -0.12 -1.84 5.22 -25.62 -0.13 -1.97 16 24 N -0.25 -3.84 11.67 33.42 0.39 -3.45 16 25 N -0.28 -3.41 3.72 -63.68 -0.24 -3.64 16 26 C 0.09 0.57 11.12 59.85 0.67 1.24 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 29 H 0.07 0.35 7.02 -51.93 -0.36 -0.02 16 30 H 0.40 6.82 7.96 -40.82 -0.32 6.49 16 31 H 0.04 0.97 6.55 -51.93 -0.34 0.63 16 32 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 33 H 0.38 10.50 7.19 -40.82 -0.29 10.21 16 34 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.09 1.45 7.79 -51.93 -0.40 1.05 16 36 H 0.07 1.15 7.70 -51.92 -0.40 0.75 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.10 6.99 -51.93 -0.36 0.74 16 42 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.32 6.98 -51.93 -0.36 -0.05 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -36.31 379.45 -8.37 -44.68 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.59 Total: 10.28 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.44 Total: 1.41 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: 0.35 Total: -67.92 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.45 Total: -1.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.31 -8.37 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732236046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.371 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds