Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35472 * 126.43376 * 2 1 4 4 Cl 1.73602 * 127.23646 * 359.97438 * 3 2 1 5 5 C 1.41546 * 105.52064 * 180.13676 * 3 2 1 6 6 C 1.47668 * 126.45918 * 179.84025 * 5 3 2 7 7 O 1.21575 * 119.99943 * 359.71790 * 6 5 3 8 8 N 1.34776 * 119.99728 * 179.71382 * 6 5 3 9 9 C 1.46508 * 119.99573 * 174.90577 * 8 6 5 10 10 C 1.52998 * 110.01736 * 65.17568 * 9 8 6 11 11 N 1.46507 * 109.47131 * 55.17115 * 10 9 8 12 12 C 1.36930 * 119.99934 * 174.90479 * 11 10 9 13 13 H 1.07998 * 120.00389 * 0.02562 * 12 11 10 14 14 C 1.38819 * 119.99728 * 180.02562 * 12 11 10 15 15 N 1.31614 * 120.00263 * 359.72283 * 14 12 11 16 16 Si 1.86800 * 119.99786 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47276 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47287 * 119.99943 * 16 14 12 19 19 H 1.48501 * 109.47071 * 239.99882 * 16 14 12 20 20 C 1.54257 * 110.07216 * 186.59419 * 9 8 6 21 21 C 1.54886 * 104.19795 * 95.69526 * 20 9 8 22 22 C 1.54893 * 102.74625 * 37.94520 * 21 20 9 23 23 C 1.53874 * 110.03210 * 303.78295 * 9 8 6 24 24 N 1.31823 * 107.07802 * 359.57987 * 5 3 2 25 25 N 1.28470 * 110.13860 * 0.26648 * 24 5 3 26 26 C 1.46502 * 124.93391 * 180.02562 * 25 24 5 27 27 H 1.08996 * 109.47181 * 270.32663 * 1 2 3 28 28 H 1.08996 * 109.46801 * 30.32752 * 1 2 3 29 29 H 1.08996 * 109.46744 * 150.32428 * 1 2 3 30 30 H 0.96993 * 120.00337 * 354.91113 * 8 6 5 31 31 H 1.09002 * 109.47135 * 295.17411 * 10 9 8 32 32 H 1.08997 * 109.47285 * 175.17138 * 10 9 8 33 33 H 0.96993 * 119.99601 * 354.90812 * 11 10 9 34 34 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 35 35 H 1.08998 * 110.48720 * 214.37628 * 20 9 8 36 36 H 1.09010 * 110.48694 * 337.02031 * 20 9 8 37 37 H 1.08999 * 110.76039 * 279.62578 * 21 20 9 38 38 H 1.09003 * 110.76040 * 156.25627 * 21 20 9 39 39 H 1.08998 * 110.48461 * 203.37816 * 22 21 20 40 40 H 1.08995 * 110.48774 * 80.73388 * 22 21 20 41 41 H 1.09000 * 110.03407 * 359.95562 * 23 9 8 42 42 H 1.09005 * 110.02989 * 121.38262 * 23 9 8 43 43 H 1.08997 * 109.47079 * 89.97187 * 26 25 24 44 44 H 1.08998 * 109.46744 * 209.96941 * 26 25 24 45 45 H 1.08996 * 109.46846 * 329.96637 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7559 -0.0006 5 6 3.6338 0.5847 -0.0033 6 6 4.8774 1.3809 -0.0078 7 8 4.8216 2.5953 -0.0143 8 7 6.0742 0.7612 -0.0048 9 6 7.3058 1.5461 -0.1219 10 6 7.4735 2.4436 1.1057 11 7 7.4282 1.6244 2.3195 12 6 7.6618 2.1971 3.5411 13 1 7.8790 3.2528 3.6100 14 6 7.6194 1.4207 4.6911 15 7 7.3493 0.1353 4.6078 16 14 7.9373 2.2022 6.3578 17 1 8.2091 3.6514 6.1813 18 1 6.7443 2.0237 7.2239 19 1 9.1118 1.5525 6.9931 20 6 8.5213 0.6065 -0.2597 21 6 8.7575 0.5124 -1.7875 22 6 8.4578 1.9537 -2.2691 23 6 7.2653 2.4027 -1.3996 24 7 3.5456 -0.7306 0.0043 25 7 2.3126 -1.0912 0.0062 26 6 1.8446 -2.4795 0.0147 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8870 -0.5189 29 1 -0.3633 -0.8929 -0.5088 30 1 6.1203 -0.2044 0.0750 31 1 6.6678 3.1773 1.1323 32 1 8.4325 2.9589 1.0508 33 1 7.2329 0.6764 2.2576 34 1 7.3200 -0.4073 5.4113 35 1 9.3928 1.0350 0.2354 36 1 8.2923 -0.3765 0.1521 37 1 8.0673 -0.1982 -2.2421 38 1 9.7909 0.2403 -2.0027 39 1 8.1824 1.9540 -3.3237 40 1 9.3189 2.5998 -2.0985 41 1 6.3298 2.2338 -1.9329 42 1 7.3652 3.4578 -1.1450 43 1 1.7288 -2.8176 1.0444 44 1 0.8851 -2.5425 -0.4985 45 1 2.5717 -3.1111 -0.4956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732236046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = 20.180462 kcal Electronic energy + Delta-G solvation = -28369.805469 eV Core-core repulsion = 24449.054027 eV Total energy + Delta-G solvation = -3920.751441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.78578 -41.24719 -38.72656 -37.50901 -36.16807 -34.85297 -34.22551 -33.47973 -32.93495 -29.93716 -29.63266 -28.41174 -27.82275 -26.29176 -24.41714 -23.91851 -22.17373 -21.70844 -21.05722 -20.11976 -19.13428 -18.39121 -17.60363 -17.57015 -17.25182 -16.51859 -16.17813 -15.83456 -15.61187 -15.50237 -15.19560 -15.00746 -14.55476 -14.52394 -14.17823 -14.05884 -13.71680 -13.60614 -13.44581 -13.20132 -13.08990 -12.84600 -12.80248 -12.66438 -12.46395 -12.24241 -12.15668 -11.98503 -11.90585 -11.76976 -11.72580 -11.66932 -11.38898 -11.08078 -10.74805 -10.22977 -9.90378 -9.72903 -8.95364 -7.95219 -5.21794 0.43472 0.78374 0.96291 1.42849 1.44358 1.54533 1.70382 2.19825 2.37823 2.54775 3.31106 3.38444 3.52247 3.55202 3.72466 3.82007 3.94680 4.12273 4.18743 4.32375 4.36406 4.41497 4.52943 4.56659 4.62962 4.69595 4.71053 4.78634 4.82572 4.86754 4.89527 4.93548 5.06718 5.10453 5.12577 5.20814 5.26495 5.36341 5.46718 5.50649 5.68594 5.74256 6.26980 6.49466 6.76535 7.27970 7.33963 8.09263 8.37095 9.28381 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008394 B = 0.004440 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.810804 B = 6304.817834 C = 7808.964786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 C -0.137 4.137 4 Cl -0.021 7.021 5 C -0.028 4.028 6 C 0.597 3.403 7 O -0.544 6.544 8 N -0.692 5.692 9 C 0.172 3.828 10 C 0.147 3.853 11 N -0.731 5.731 12 C -0.242 4.242 13 H 0.066 0.934 14 C -0.072 4.072 15 N -0.966 5.966 16 Si 0.970 3.030 17 H -0.271 1.271 18 H -0.295 1.295 19 H -0.287 1.287 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.111 4.111 24 N -0.258 5.258 25 N -0.270 5.270 26 C 0.072 3.928 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.405 0.595 31 H 0.010 0.990 32 H 0.029 0.971 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.136 0.864 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.836 -7.464 -17.419 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.175 4.175 4 Cl 0.007 6.993 5 C -0.187 4.187 6 C 0.381 3.619 7 O -0.420 6.420 8 N -0.343 5.343 9 C 0.087 3.913 10 C 0.020 3.980 11 N -0.373 5.373 12 C -0.374 4.374 13 H 0.084 0.916 14 C -0.264 4.264 15 N -0.617 5.617 16 Si 0.799 3.201 17 H -0.196 1.196 18 H -0.222 1.222 19 H -0.213 1.213 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.150 4.150 24 N -0.094 5.094 25 N -0.060 5.060 26 C -0.065 4.065 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.241 0.759 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.154 0.846 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.240 -7.399 -17.335 22.473 hybrid contribution -0.309 0.671 1.554 1.721 sum -12.549 -6.728 -15.781 21.255 Atomic orbital electron populations 1.20616 0.82307 1.06070 1.05068 1.21712 0.97179 0.84670 1.05227 1.20785 0.92308 0.88158 1.16207 1.98324 1.90678 1.12951 1.97298 1.21862 0.94490 0.90383 1.12006 1.17006 0.82299 0.86420 0.76141 1.90761 1.86963 1.13642 1.50599 1.45839 1.04515 1.10705 1.73192 1.21264 0.83847 0.91860 0.94378 1.21216 0.97314 0.93466 0.86026 1.42305 1.85165 1.08375 1.01474 1.19625 1.38398 0.93541 0.85862 0.91604 1.25462 1.03599 0.96299 1.01018 1.69813 1.57814 1.05936 1.28127 0.85117 0.76900 0.77906 0.80134 1.19581 1.22220 1.21346 1.22532 0.95891 0.98435 0.98367 1.22490 1.02589 0.96985 0.92873 1.22368 0.97001 0.96605 0.99305 1.22339 0.99565 0.99037 0.94101 1.73567 1.03646 1.12902 1.19328 1.45850 1.01673 1.09181 1.49271 1.22767 1.03657 0.73678 1.06405 0.88668 0.89108 0.86976 0.75931 0.97198 0.95358 0.79234 0.94091 0.90838 0.91559 0.90837 0.89382 0.89899 0.90659 0.92321 0.92122 0.88183 0.84555 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.99 71.24 0.71 -0.27 16 2 C 0.04 0.88 6.94 41.33 0.29 1.17 16 3 C -0.14 -4.43 6.79 22.45 0.15 -4.28 16 4 Cl -0.02 -0.68 27.93 -2.72 -0.08 -0.76 16 5 C -0.03 -1.02 7.13 42.45 0.30 -0.72 16 6 C 0.60 24.65 6.87 86.73 0.60 25.24 16 7 O -0.54 -25.17 13.14 -3.95 -0.05 -25.22 16 8 N -0.69 -26.05 4.50 -422.65 -1.90 -27.95 16 9 C 0.17 6.32 0.57 4.32 0.00 6.32 16 10 C 0.15 6.91 4.64 86.38 0.40 7.31 16 11 N -0.73 -40.32 5.27 -343.44 -1.81 -42.13 16 12 C -0.24 -14.66 9.99 84.04 0.84 -13.82 16 13 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 14 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 15 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 16 Si 0.97 48.83 29.55 68.60 2.03 50.86 16 17 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 20 C -0.11 -3.59 5.74 31.66 0.18 -3.41 16 21 C -0.11 -2.57 6.91 31.89 0.22 -2.35 16 22 C -0.12 -2.70 6.83 31.67 0.22 -2.49 16 23 C -0.11 -3.55 5.22 31.32 0.16 -3.39 16 24 N -0.26 -8.04 11.67 -48.17 -0.56 -8.60 16 25 N -0.27 -6.08 3.72 -355.39 -1.32 -7.40 16 26 C 0.07 0.70 11.12 127.77 1.42 2.12 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.09 8.04 -2.39 -0.02 1.07 16 29 H 0.11 0.48 7.02 -2.39 -0.02 0.46 16 30 H 0.41 14.32 7.96 -92.71 -0.74 13.58 16 31 H 0.01 0.53 6.55 -2.39 -0.02 0.52 16 32 H 0.03 1.31 8.04 -2.39 -0.02 1.29 16 33 H 0.38 21.44 7.19 -92.71 -0.67 20.77 16 34 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.07 2.49 7.79 -2.39 -0.02 2.47 16 36 H 0.07 2.14 7.70 -2.38 -0.02 2.12 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.97 6.99 -2.39 -0.02 1.95 16 42 H 0.06 2.06 7.67 -2.38 -0.02 2.04 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.14 0.21 6.98 -2.39 -0.02 0.20 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -82.49 379.45 2.18 -80.32 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.37 Total: 34.16 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.96 Total: 7.57 kcal Atomic # 7 Polarization: -141.61 SS G_CDS: -5.31 Total: -146.92 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.86 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -82.49 2.18 -80.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732236046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.499 kcal (2) G-P(sol) polarization free energy of solvation -82.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds