Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 N 1.46501 * 109.47004 * 179.97438 * 10 8 7 12 12 C 1.35066 * 125.56266 * 90.03171 * 11 10 8 13 13 O 1.21299 * 127.28380 * 359.93467 * 12 11 10 14 14 C 1.49977 * 105.42974 * 179.97438 * 12 11 10 15 15 O 1.21299 * 127.28259 * 179.97438 * 14 12 11 16 16 N 1.35058 * 105.43292 * 359.97438 * 14 12 11 17 17 C 1.46507 * 125.56855 * 180.02562 * 16 14 12 18 18 C 1.34269 * 125.56877 * 269.71688 * 11 10 8 19 19 O 1.21482 * 124.30018 * 0.02562 * 18 11 10 20 20 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 4 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 4 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 4 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 30 30 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 33 33 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 35 35 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 39 39 H 1.08992 * 109.47087 * 299.99808 * 10 8 7 40 40 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 41 41 H 1.08999 * 109.46735 * 359.97438 * 17 16 14 42 42 H 1.09000 * 109.46718 * 119.97651 * 17 16 14 43 43 H 1.08997 * 109.47230 * 239.97881 * 17 16 14 44 44 H 0.97001 * 120.00384 * 265.00562 * 20 4 2 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0447 -4.7515 1.8270 10 6 2.4072 -4.9302 3.7457 11 7 1.9187 -6.3114 3.7457 12 6 2.5054 -7.3521 3.1156 13 8 3.5192 -7.3312 2.4501 14 6 1.6375 -8.5387 3.4123 15 8 1.8011 -9.6807 3.0375 16 7 0.6353 -8.0669 4.1849 17 6 -0.4681 -8.8623 4.7291 18 6 0.8180 -6.7505 4.3770 19 8 0.0797 -6.0458 5.0358 20 7 3.5050 -0.7218 1.2490 21 6 4.1901 0.3552 1.7447 22 1 3.6505 1.2032 2.1400 23 6 5.5782 0.3572 1.7392 24 7 6.2359 -0.6760 1.2570 25 14 6.5129 1.8261 2.4161 26 1 6.1596 2.0219 3.8451 27 1 7.9728 1.5823 2.2956 28 1 6.1494 3.0421 1.6451 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7231 -2.4351 2.9844 39 1 3.4934 -4.9286 3.6559 40 1 2.1189 -4.4431 4.6772 41 1 -0.3578 -9.8999 4.4140 42 1 -0.4516 -8.8095 5.8177 43 1 -1.4156 -8.4694 4.3606 44 1 3.9897 -1.4834 0.8939 45 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732567755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -78.734943 kcal Electronic energy + Delta-G solvation = -30166.917283 eV Core-core repulsion = 25801.167383 eV Total energy + Delta-G solvation = -4365.749900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.64661 -39.83745 -39.48861 -38.89482 -37.33483 -36.73934 -35.50473 -34.02947 -33.17011 -31.02290 -30.31419 -28.40515 -26.96696 -26.09201 -25.90138 -23.83970 -22.54745 -22.24167 -21.63658 -20.45026 -19.39136 -18.31806 -18.24697 -17.39662 -17.37248 -16.88973 -16.71678 -16.28775 -15.62838 -15.43228 -15.24113 -14.99126 -14.90260 -14.76085 -14.04040 -13.72986 -13.60844 -13.56525 -13.42720 -13.17347 -13.00013 -12.96406 -12.59966 -12.11151 -12.06909 -11.66596 -11.35715 -11.11858 -10.99650 -10.88900 -10.86148 -10.69184 -10.48299 -10.41990 -10.34229 -10.16218 -10.02896 -9.65628 -9.57862 -8.97477 -8.79832 -7.09309 -5.86873 -3.16830 0.00371 1.38832 1.69253 2.20901 2.24982 2.62617 3.32888 3.36617 3.42177 3.43403 3.56744 4.20832 4.49056 4.65997 4.67993 4.82105 4.84715 4.95151 4.97159 5.12820 5.27274 5.30559 5.32230 5.48112 5.58637 5.69924 5.83158 5.93668 6.12350 6.19328 6.23357 6.32617 6.33074 6.38232 6.47912 6.57604 6.58455 6.79828 6.85398 7.02062 7.18777 7.25918 7.61389 7.68095 8.28158 8.30598 9.42172 9.95906 10.31861 11.34558 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002800 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.698312 B = 9996.361639 C =11105.960544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.114 3.886 7 N -0.702 5.702 8 C 0.497 3.503 9 O -0.546 6.546 10 C 0.100 3.900 11 N -0.557 5.557 12 C 0.511 3.489 13 O -0.399 6.399 14 C 0.514 3.486 15 O -0.414 6.414 16 N -0.575 5.575 17 C 0.090 3.910 18 C 0.717 3.283 19 O -0.485 6.485 20 N -0.722 5.722 21 C -0.240 4.240 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 -11.840 7.743 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.060 3.940 5 H 0.073 0.927 6 C -0.010 4.010 7 N -0.354 5.354 8 C 0.281 3.719 9 O -0.424 6.424 10 C -0.024 4.024 11 N -0.305 5.305 12 C 0.291 3.709 13 O -0.262 6.262 14 C 0.295 3.705 15 O -0.279 6.279 16 N -0.325 5.325 17 C -0.050 4.050 18 C 0.420 3.580 19 O -0.353 6.353 20 N -0.363 5.363 21 C -0.371 4.371 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.734 3.266 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.250 0.750 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.764 -12.312 7.079 19.095 hybrid contribution 0.976 0.957 0.366 1.415 sum -11.787 -11.356 7.445 17.981 Atomic orbital electron populations 1.21945 0.96859 1.00930 1.00990 1.21732 0.93534 0.97849 1.00020 1.21821 1.04249 0.94570 0.99031 1.20551 0.86447 0.90904 0.96144 0.92712 1.21802 0.97371 0.93290 0.88549 1.45861 1.48201 1.10212 1.31080 1.20510 0.82157 0.82937 0.86328 1.90707 1.36502 1.67913 1.47257 1.21660 1.02179 0.77691 1.00837 1.46114 1.25525 1.10643 1.48231 1.20815 0.85477 0.84927 0.79704 1.90892 1.20369 1.83552 1.31403 1.20854 0.81885 0.89416 0.78365 1.90843 1.70867 1.18256 1.47893 1.46537 1.27154 1.09814 1.48997 1.21977 0.87053 0.95696 1.00265 1.15775 0.81006 0.81730 0.79516 1.91028 1.46222 1.58150 1.39897 1.42475 0.98675 1.21120 1.74051 1.19139 0.88738 0.96355 1.32821 0.90942 1.24734 0.96484 0.97674 1.01678 1.69649 1.07081 1.29792 1.51068 0.86344 0.79125 0.82379 0.78755 1.21269 1.21798 1.21283 0.93152 0.93535 0.93100 0.91887 0.89447 0.94979 0.94041 0.91358 0.91682 0.74982 0.84567 0.84823 0.88199 0.89604 0.89593 0.78075 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.84 37.16 0.33 -1.70 16 2 C -0.11 -1.79 2.69 -90.62 -0.24 -2.04 16 3 C -0.14 -2.42 8.26 37.16 0.31 -2.12 16 4 C 0.17 2.93 2.18 -67.93 -0.15 2.79 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.81 4.73 -4.04 -0.02 1.79 16 7 N -0.70 -10.41 5.39 -60.29 -0.32 -10.74 16 8 C 0.50 7.38 7.90 -10.99 -0.09 7.29 16 9 O -0.55 -9.90 16.43 5.56 0.09 -9.81 16 10 C 0.10 1.10 6.34 -5.19 -0.03 1.07 16 11 N -0.56 -6.55 2.15 -122.52 -0.26 -6.81 16 12 C 0.51 6.46 8.31 -11.20 -0.09 6.37 16 13 O -0.40 -6.12 17.88 5.54 0.10 -6.03 16 14 C 0.51 5.70 8.31 -11.21 -0.09 5.61 16 15 O -0.41 -5.23 17.65 5.54 0.10 -5.14 16 16 N -0.58 -5.38 3.06 -128.66 -0.39 -5.77 16 17 C 0.09 0.49 10.95 59.85 0.66 1.15 16 18 C 0.72 8.12 8.32 -87.81 -0.73 7.39 16 19 O -0.48 -6.35 17.38 5.38 0.09 -6.25 16 20 N -0.72 -15.49 4.44 -53.43 -0.24 -15.73 16 21 C -0.24 -5.78 7.55 -15.06 -0.11 -5.90 16 22 H 0.07 1.72 7.38 -52.49 -0.39 1.33 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -25.83 13.06 55.49 0.72 -25.11 16 25 Si 0.90 20.84 29.55 -169.99 -5.02 15.82 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.81 5.99 -51.93 -0.31 1.50 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.03 6.71 -51.93 -0.35 0.68 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.41 5.96 8.14 -40.82 -0.33 5.63 16 39 H 0.14 1.30 8.10 -51.93 -0.42 0.88 16 40 H 0.13 1.12 7.97 -51.93 -0.41 0.70 16 41 H 0.10 0.42 7.76 -51.93 -0.40 0.02 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.39 9.14 7.80 -40.82 -0.32 8.82 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -32.11 386.12 -5.90 -38.00 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.21 Total: 10.36 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: -0.37 Total: 21.38 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.49 Total: -64.15 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: 0.38 Total: -27.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.11 -5.90 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732567755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.732 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds