Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 N 1.46501 * 109.47004 * 179.97438 * 10 8 7 12 12 C 1.35066 * 125.56266 * 90.03171 * 11 10 8 13 13 O 1.21299 * 127.28380 * 359.93467 * 12 11 10 14 14 C 1.49977 * 105.42974 * 179.97438 * 12 11 10 15 15 O 1.21299 * 127.28259 * 179.97438 * 14 12 11 16 16 N 1.35058 * 105.43292 * 359.97438 * 14 12 11 17 17 C 1.46507 * 125.56855 * 180.02562 * 16 14 12 18 18 C 1.34269 * 125.56877 * 269.71688 * 11 10 8 19 19 O 1.21482 * 124.30018 * 0.02562 * 18 11 10 20 20 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 4 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 4 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 4 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 30 30 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 33 33 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 35 35 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 39 39 H 1.08992 * 109.47087 * 299.99808 * 10 8 7 40 40 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 41 41 H 1.08999 * 109.46735 * 359.97438 * 17 16 14 42 42 H 1.09000 * 109.46718 * 119.97651 * 17 16 14 43 43 H 1.08997 * 109.47230 * 239.97881 * 17 16 14 44 44 H 0.97001 * 120.00384 * 265.00562 * 20 4 2 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0447 -4.7515 1.8270 10 6 2.4072 -4.9302 3.7457 11 7 1.9187 -6.3114 3.7457 12 6 2.5054 -7.3521 3.1156 13 8 3.5192 -7.3312 2.4501 14 6 1.6375 -8.5387 3.4123 15 8 1.8011 -9.6807 3.0375 16 7 0.6353 -8.0669 4.1849 17 6 -0.4681 -8.8623 4.7291 18 6 0.8180 -6.7505 4.3770 19 8 0.0797 -6.0458 5.0358 20 7 3.5050 -0.7218 1.2490 21 6 4.1901 0.3552 1.7447 22 1 3.6505 1.2032 2.1400 23 6 5.5782 0.3572 1.7392 24 7 6.2359 -0.6760 1.2570 25 14 6.5129 1.8261 2.4161 26 1 6.1596 2.0219 3.8451 27 1 7.9728 1.5823 2.2956 28 1 6.1494 3.0421 1.6451 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7231 -2.4351 2.9844 39 1 3.4934 -4.9286 3.6559 40 1 2.1189 -4.4431 4.6772 41 1 -0.3578 -9.8999 4.4140 42 1 -0.4516 -8.8095 5.8177 43 1 -1.4156 -8.4694 4.3606 44 1 3.9897 -1.4834 0.8939 45 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732567755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -102.074775 kcal Electronic energy + Delta-G solvation = -30167.929374 eV Core-core repulsion = 25801.167383 eV Total energy + Delta-G solvation = -4366.761991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.56658 -40.98041 -40.49457 -39.95618 -38.75676 -37.70805 -36.41148 -35.34946 -34.89708 -32.29737 -31.62622 -29.65232 -27.93859 -27.37017 -26.84242 -25.51922 -23.72365 -23.23788 -22.75482 -21.65370 -20.75000 -19.46251 -19.17717 -18.94465 -18.34890 -17.92839 -17.84996 -17.29363 -16.91524 -16.55805 -16.41482 -16.22275 -15.96066 -15.80304 -15.66098 -15.15477 -14.93106 -14.85922 -14.35872 -14.18881 -14.03511 -13.91506 -13.57290 -13.44674 -13.32540 -12.89273 -12.78576 -12.69772 -12.46481 -12.30662 -12.27658 -12.01426 -11.97203 -11.74199 -11.46664 -11.42709 -11.27050 -11.18538 -10.88232 -10.71827 -10.08259 -8.93537 -7.84654 -5.11767 -0.96238 0.51662 0.82020 1.27951 1.32415 1.45663 1.53143 1.54691 1.59541 2.20859 2.62240 2.63338 3.40924 3.47764 3.59194 3.87625 3.93621 3.94813 4.01906 4.13415 4.20549 4.30855 4.32860 4.45398 4.46689 4.59982 4.64795 4.77273 4.77930 4.93490 4.98918 5.07979 5.16528 5.27110 5.31243 5.32090 5.43826 5.48926 5.63121 5.67085 5.78210 5.91235 6.28775 6.35056 6.48182 7.09312 7.43638 8.14544 8.39573 9.37687 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002800 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.698312 B = 9996.361639 C =11105.960544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.173 3.827 5 H 0.062 0.938 6 C 0.123 3.877 7 N -0.700 5.700 8 C 0.494 3.506 9 O -0.581 6.581 10 C 0.102 3.898 11 N -0.558 5.558 12 C 0.511 3.489 13 O -0.433 6.433 14 C 0.526 3.474 15 O -0.429 6.429 16 N -0.564 5.564 17 C 0.080 3.920 18 C 0.720 3.280 19 O -0.498 6.498 20 N -0.727 5.727 21 C -0.214 4.214 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.956 3.044 26 H -0.277 1.277 27 H -0.306 1.306 28 H -0.285 1.285 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.417 0.583 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.647 -11.557 9.103 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.064 3.936 5 H 0.080 0.920 6 C -0.002 4.002 7 N -0.351 5.351 8 C 0.279 3.721 9 O -0.462 6.462 10 C -0.022 4.022 11 N -0.305 5.305 12 C 0.292 3.708 13 O -0.298 6.298 14 C 0.306 3.694 15 O -0.295 6.295 16 N -0.313 5.313 17 C -0.058 4.058 18 C 0.424 3.576 19 O -0.367 6.367 20 N -0.367 5.367 21 C -0.346 4.346 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.787 3.213 26 H -0.203 1.203 27 H -0.233 1.233 28 H -0.212 1.212 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.254 0.746 39 H 0.169 0.831 40 H 0.183 0.817 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.936 -12.007 8.480 20.956 hybrid contribution 1.482 0.889 -0.075 1.730 sum -13.454 -11.117 8.405 19.371 Atomic orbital electron populations 1.21851 0.94018 1.01804 1.02181 1.21638 0.95856 0.96823 0.98584 1.21735 1.01685 0.95516 1.00299 1.20682 0.83965 0.92102 0.96830 0.92027 1.21640 0.98068 0.92120 0.88328 1.45836 1.48113 1.10477 1.30718 1.21117 0.81467 0.82688 0.86780 1.90688 1.38203 1.68509 1.48784 1.21822 1.02749 0.77184 1.00399 1.46170 1.25670 1.10730 1.47951 1.21124 0.85084 0.85725 0.78905 1.90873 1.21868 1.84216 1.32883 1.20505 0.81919 0.88613 0.78358 1.90842 1.71293 1.18648 1.48669 1.46601 1.27310 1.09226 1.48147 1.22372 0.85982 0.95896 1.01500 1.15809 0.80538 0.82178 0.79096 1.91024 1.46567 1.58610 1.40531 1.42584 1.00454 1.19982 1.73661 1.19416 0.88695 0.96488 1.29965 0.90226 1.25324 0.97609 0.99708 1.03561 1.69794 1.06392 1.31677 1.53900 0.85466 0.77187 0.80006 0.78596 1.20278 1.23321 1.21219 0.92046 0.92287 0.92413 0.93382 0.93198 0.93270 0.93266 0.89924 0.93449 0.74613 0.83112 0.81663 0.86790 0.87616 0.88703 0.79551 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.84 71.98 0.64 -2.78 16 2 C -0.11 -3.36 2.69 -10.79 -0.03 -3.39 16 3 C -0.13 -4.49 8.26 71.98 0.59 -3.89 16 4 C 0.17 5.77 2.18 44.99 0.10 5.86 16 5 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 6 C 0.12 3.78 4.73 86.38 0.41 4.19 16 7 N -0.70 -20.14 5.39 -463.06 -2.49 -22.63 16 8 C 0.49 14.23 7.90 87.66 0.69 14.93 16 9 O -0.58 -20.81 16.43 -3.03 -0.05 -20.86 16 10 C 0.10 2.10 6.34 85.63 0.54 2.64 16 11 N -0.56 -12.48 2.15 -778.33 -1.67 -14.15 16 12 C 0.51 12.74 8.31 87.39 0.73 13.46 16 13 O -0.43 -13.47 17.88 -3.09 -0.06 -13.52 16 14 C 0.53 11.17 8.31 87.39 0.73 11.89 16 15 O -0.43 -10.49 17.65 -3.09 -0.05 -10.55 16 16 N -0.56 -9.57 3.06 -797.76 -2.44 -12.01 16 17 C 0.08 0.69 10.95 127.77 1.40 2.09 16 18 C 0.72 15.12 8.32 179.37 1.49 16.61 16 19 O -0.50 -12.00 17.38 -3.66 -0.06 -12.07 16 20 N -0.73 -31.10 4.44 -322.94 -1.44 -32.53 16 21 C -0.21 -10.23 7.55 84.03 0.63 -9.59 16 22 H 0.08 3.66 7.38 -2.91 -0.02 3.64 16 23 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 24 N -0.97 -54.99 13.06 21.65 0.28 -54.71 16 25 Si 0.96 43.11 29.55 68.60 2.03 45.14 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.33 6.54 -2.39 -0.02 1.32 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 2.03 5.99 -2.39 -0.01 2.02 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 2.33 6.71 -2.39 -0.02 2.32 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 11.57 8.14 -92.71 -0.75 10.81 16 39 H 0.15 2.71 8.10 -2.39 -0.02 2.69 16 40 H 0.17 2.35 7.97 -2.39 -0.02 2.33 16 41 H 0.11 0.69 7.76 -2.39 -0.02 0.67 16 42 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.37 17.95 7.80 -92.71 -0.72 17.23 16 45 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -69.64 386.12 2.01 -67.64 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.43 Total: 31.41 kcal Atomic # 6 Polarization: 40.47 SS G_CDS: 8.39 Total: 48.86 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -7.76 Total: -136.04 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -0.22 Total: -57.00 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.64 2.01 -67.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732567755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.440 kcal (2) G-P(sol) polarization free energy of solvation -69.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds