Wall clock time and date at job start Sat Apr 11 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47287 * 2 1 4 4 N 1.34234 * 126.28017 * 265.02524 * 3 2 1 5 5 H 0.97004 * 125.73612 * 359.70810 * 4 3 2 6 6 N 1.39932 * 108.52505 * 179.97438 * 4 3 2 7 7 C 1.30532 * 108.89348 * 359.97438 * 6 4 3 8 8 Cl 1.73595 * 126.00634 * 179.97438 * 7 6 4 9 9 C 1.38060 * 126.28441 * 84.99392 * 3 2 1 10 10 C 1.47385 * 126.42052 * 0.06493 * 9 3 2 11 11 O 1.21609 * 120.00564 * 89.99390 * 10 9 3 12 12 N 1.34779 * 120.00061 * 269.99540 * 10 9 3 13 13 C 1.46493 * 120.00536 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.43457 * 36.08594 * 13 12 10 15 15 C 1.54265 * 110.48648 * 273.54658 * 13 12 10 16 16 C 1.53871 * 106.60160 * 217.70752 * 15 13 12 17 17 C 1.54272 * 106.59873 * 359.97438 * 16 15 13 18 18 C 1.54887 * 110.49156 * 158.76925 * 13 12 10 19 19 H 1.09005 * 110.75282 * 38.30562 * 18 13 12 20 20 C 1.53002 * 110.75960 * 274.93792 * 18 13 12 21 21 N 1.46497 * 109.47097 * 174.99366 * 20 18 13 22 22 C 1.36935 * 119.99530 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00285 * 0.02562 * 22 21 20 24 24 C 1.38818 * 119.99967 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00253 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99769 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47548 * 89.99818 * 26 24 22 28 28 H 1.48501 * 109.47188 * 210.00119 * 26 24 22 29 29 H 1.48501 * 109.47233 * 329.99729 * 26 24 22 30 30 H 1.08995 * 109.47719 * 300.00349 * 1 2 3 31 31 H 1.09006 * 109.47018 * 60.00427 * 1 2 3 32 32 H 1.09000 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47519 * 239.99928 * 2 1 3 34 34 H 1.08997 * 109.47321 * 119.99532 * 2 1 3 35 35 H 0.97004 * 119.99908 * 0.02562 * 12 10 9 36 36 H 1.08999 * 110.03234 * 336.99679 * 15 13 12 37 37 H 1.09004 * 110.03431 * 98.42375 * 15 13 12 38 38 H 1.08998 * 110.03309 * 119.28444 * 16 15 13 39 39 H 1.09004 * 110.03642 * 240.71466 * 16 15 13 40 40 H 1.08999 * 110.48756 * 142.28307 * 17 16 15 41 41 H 1.08999 * 110.48663 * 264.80050 * 17 16 15 42 42 H 1.09003 * 109.46926 * 294.99837 * 20 18 13 43 43 H 1.09004 * 109.46706 * 54.99353 * 20 18 13 44 44 H 0.96996 * 120.00412 * 0.02562 * 21 20 18 45 45 H 0.96994 * 120.00068 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3856 2.1384 -1.0780 5 1 2.3649 1.8281 -1.9969 6 7 2.7944 3.4074 -0.6530 7 6 2.6955 3.4699 0.6471 8 17 3.0888 4.8415 1.6357 9 6 2.2131 2.2235 1.1086 10 6 1.9525 1.8509 2.5106 11 8 2.8344 1.3482 3.1802 12 7 0.7367 2.0672 3.0506 13 6 0.4778 1.6974 4.4442 14 1 1.3625 1.8750 5.0558 15 6 0.0436 0.2202 4.5391 16 6 -1.0398 0.1496 5.6295 17 6 -1.2257 1.5863 6.1598 18 6 -0.7347 2.4861 4.9982 19 1 -1.5078 2.5908 4.2368 20 6 -0.2976 3.8559 5.5212 21 7 -1.4779 4.6230 5.9269 22 6 -1.3322 5.8879 6.4309 23 1 -0.3473 6.3201 6.5288 24 6 -2.4505 6.6147 6.8159 25 7 -2.3105 7.8302 7.3008 26 14 -4.1539 5.8668 6.6472 27 1 -4.5023 5.1421 7.8956 28 1 -5.1464 6.9452 6.4074 29 1 -4.1674 4.9188 5.5043 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.0331 2.4678 2.5164 36 1 -0.3653 -0.1108 3.5845 37 1 0.8943 -0.4020 4.8172 38 1 -1.9745 -0.2157 5.2041 39 1 -0.7148 -0.5068 6.4368 40 1 -2.2765 1.7808 6.3744 41 1 -0.6193 1.7453 7.0515 42 1 0.3624 3.7237 6.3785 43 1 0.2320 4.3930 4.7343 44 1 -2.3624 4.2347 5.8393 45 1 -3.0919 8.3382 7.5694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732611772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:15 Heat of formation + Delta-G solvation = 25.712931 kcal Electronic energy + Delta-G solvation = -27761.071992 eV Core-core repulsion = 23840.560457 eV Total energy + Delta-G solvation = -3920.511536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89979 -39.72857 -37.88030 -36.99086 -34.64872 -34.58548 -33.59630 -31.73239 -31.53047 -29.97232 -29.03676 -27.55100 -24.86628 -24.37662 -22.72610 -22.18450 -21.77997 -20.50660 -20.23563 -19.43716 -18.23202 -17.55152 -16.67395 -16.63238 -15.66151 -15.48823 -15.14787 -14.89088 -14.56557 -14.42792 -14.33090 -13.90172 -13.74398 -13.37717 -13.23984 -13.13092 -12.62419 -12.44514 -12.33090 -12.14665 -12.01162 -11.81203 -11.67838 -11.64166 -11.08913 -11.02205 -10.96813 -10.78452 -10.52189 -10.42553 -10.34493 -10.05957 -10.00710 -9.76184 -9.56340 -9.11121 -8.99324 -8.86535 -7.19553 -5.73671 -3.08800 1.16679 1.24495 1.88120 2.47360 2.55432 3.27701 3.37464 3.39898 3.45883 3.99423 4.29723 4.48817 4.60810 4.61944 4.67216 4.72793 4.87977 4.94816 4.96842 5.08329 5.31665 5.33596 5.47313 5.47800 5.51240 5.58222 5.60842 5.65552 5.68766 5.71106 5.84006 5.86904 5.99053 6.15001 6.21287 6.33135 6.45373 6.53030 6.58370 6.72715 6.82563 6.92587 7.50270 8.03414 8.20251 8.45369 9.24800 9.96889 10.16991 11.45016 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.003498 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.002739 B = 8002.488955 C = 9330.883841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 C 0.145 3.855 4 N -0.447 5.447 5 H 0.447 0.553 6 N -0.275 5.275 7 C 0.160 3.840 8 Cl 0.031 6.969 9 C -0.267 4.267 10 C 0.599 3.401 11 O -0.529 6.529 12 N -0.707 5.707 13 C 0.148 3.852 14 H 0.098 0.902 15 C -0.131 4.131 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.107 4.107 19 H 0.080 0.920 20 C 0.165 3.835 21 N -0.754 5.754 22 C -0.241 4.241 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.028 0.972 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -20.368 -17.919 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C 0.012 3.988 4 N -0.156 5.156 5 H 0.293 0.707 6 N -0.101 5.101 7 C -0.033 4.033 8 Cl 0.059 6.941 9 C -0.283 4.283 10 C 0.383 3.617 11 O -0.404 6.404 12 N -0.357 5.357 13 C 0.043 3.957 14 H 0.116 0.884 15 C -0.170 4.170 16 C -0.161 4.161 17 C -0.152 4.152 18 C -0.126 4.126 19 H 0.098 0.902 20 C 0.038 3.962 21 N -0.400 5.400 22 C -0.371 4.371 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.236 0.764 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.357 -19.725 -18.279 27.880 hybrid contribution -1.755 -0.446 -0.135 1.816 sum 5.602 -20.171 -18.414 27.880 Atomic orbital electron populations 1.21785 0.92885 1.03071 1.03029 1.20412 0.97304 0.88016 1.05047 1.21412 0.96136 0.95161 0.86084 1.45851 1.51548 1.09242 1.08955 0.70665 1.77200 1.23183 0.98743 1.10932 1.22676 0.99659 0.90388 0.90583 1.98468 1.92127 1.38941 1.64581 1.19809 1.19068 0.94640 0.94758 1.17070 0.82284 0.77712 0.84616 1.90795 1.44493 1.43201 1.61952 1.46049 1.13030 1.63088 1.13574 1.21920 0.98960 0.93525 0.81326 0.88419 1.22510 0.98822 0.96467 0.99201 1.22116 0.98323 0.97656 0.97966 1.22330 1.01932 0.93029 0.97907 1.22620 0.96225 0.95856 0.97908 0.90193 1.20633 0.90290 0.88464 0.96827 1.42671 1.03035 1.16036 1.78226 1.19071 0.95221 0.89383 1.33446 0.89273 1.24665 0.97253 0.96135 1.01152 1.69701 1.28985 1.10629 1.49015 0.86550 0.85910 0.78293 0.77777 1.21098 1.21819 1.20425 0.91558 0.92240 0.91042 0.89602 0.88250 0.76386 0.91699 0.91371 0.92011 0.91828 0.91275 0.90776 0.95269 0.95425 0.80743 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.15 0.37 -0.35 16 2 C -0.07 -0.37 6.27 -27.89 -0.17 -0.55 16 3 C 0.14 1.24 6.55 -81.61 -0.53 0.70 16 4 N -0.45 -3.55 7.28 33.86 0.25 -3.30 16 5 H 0.45 1.79 8.96 -182.72 -1.64 0.15 16 6 N -0.28 -3.25 12.64 33.18 0.42 -2.83 16 7 C 0.16 2.08 7.89 -16.91 -0.13 1.95 16 8 Cl 0.03 0.43 29.19 -51.86 -1.51 -1.09 16 9 C -0.27 -3.19 5.88 -105.04 -0.62 -3.81 16 10 C 0.60 8.01 7.25 -12.54 -0.09 7.91 16 11 O -0.53 -8.81 16.82 5.27 0.09 -8.72 16 12 N -0.71 -8.40 5.11 -53.29 -0.27 -8.67 16 13 C 0.15 1.87 2.60 -66.28 -0.17 1.69 16 14 H 0.10 1.43 7.57 -51.93 -0.39 1.04 16 15 C -0.13 -1.39 6.53 -25.62 -0.17 -1.55 16 16 C -0.12 -1.28 6.80 -25.61 -0.17 -1.45 16 17 C -0.11 -1.50 6.20 -25.05 -0.16 -1.66 16 18 C -0.11 -1.52 2.50 -88.61 -0.22 -1.74 16 19 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 20 C 0.16 3.14 5.70 -4.04 -0.02 3.11 16 21 N -0.75 -17.66 5.33 -59.91 -0.32 -17.98 16 22 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 25 N -0.94 -29.60 13.97 55.49 0.78 -28.83 16 26 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 34 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.40 4.24 8.52 -40.82 -0.35 3.89 16 36 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 42 H 0.03 0.58 7.99 -51.93 -0.41 0.17 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.36 8.14 5.53 -40.82 -0.23 7.91 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -35.34 389.14 -9.86 -45.20 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.08 Total: 5.81 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.35 Total: -2.76 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.85 Total: -61.60 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.51 Total: -1.09 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.34 -9.86 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732611772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.915 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds