Wall clock time and date at job start Sat Apr 11 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47287 * 2 1 4 4 N 1.34234 * 126.28017 * 265.02524 * 3 2 1 5 5 H 0.97004 * 125.73612 * 359.70810 * 4 3 2 6 6 N 1.39932 * 108.52505 * 179.97438 * 4 3 2 7 7 C 1.30532 * 108.89348 * 359.97438 * 6 4 3 8 8 Cl 1.73595 * 126.00634 * 179.97438 * 7 6 4 9 9 C 1.38060 * 126.28441 * 84.99392 * 3 2 1 10 10 C 1.47385 * 126.42052 * 0.06493 * 9 3 2 11 11 O 1.21609 * 120.00564 * 89.99390 * 10 9 3 12 12 N 1.34779 * 120.00061 * 269.99540 * 10 9 3 13 13 C 1.46493 * 120.00536 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.43457 * 36.08594 * 13 12 10 15 15 C 1.54265 * 110.48648 * 273.54658 * 13 12 10 16 16 C 1.53871 * 106.60160 * 217.70752 * 15 13 12 17 17 C 1.54272 * 106.59873 * 359.97438 * 16 15 13 18 18 C 1.54887 * 110.49156 * 158.76925 * 13 12 10 19 19 H 1.09005 * 110.75282 * 38.30562 * 18 13 12 20 20 C 1.53002 * 110.75960 * 274.93792 * 18 13 12 21 21 N 1.46497 * 109.47097 * 174.99366 * 20 18 13 22 22 C 1.36935 * 119.99530 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00285 * 0.02562 * 22 21 20 24 24 C 1.38818 * 119.99967 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00253 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99769 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47548 * 89.99818 * 26 24 22 28 28 H 1.48501 * 109.47188 * 210.00119 * 26 24 22 29 29 H 1.48501 * 109.47233 * 329.99729 * 26 24 22 30 30 H 1.08995 * 109.47719 * 300.00349 * 1 2 3 31 31 H 1.09006 * 109.47018 * 60.00427 * 1 2 3 32 32 H 1.09000 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47519 * 239.99928 * 2 1 3 34 34 H 1.08997 * 109.47321 * 119.99532 * 2 1 3 35 35 H 0.97004 * 119.99908 * 0.02562 * 12 10 9 36 36 H 1.08999 * 110.03234 * 336.99679 * 15 13 12 37 37 H 1.09004 * 110.03431 * 98.42375 * 15 13 12 38 38 H 1.08998 * 110.03309 * 119.28444 * 16 15 13 39 39 H 1.09004 * 110.03642 * 240.71466 * 16 15 13 40 40 H 1.08999 * 110.48756 * 142.28307 * 17 16 15 41 41 H 1.08999 * 110.48663 * 264.80050 * 17 16 15 42 42 H 1.09003 * 109.46926 * 294.99837 * 20 18 13 43 43 H 1.09004 * 109.46706 * 54.99353 * 20 18 13 44 44 H 0.96996 * 120.00412 * 0.02562 * 21 20 18 45 45 H 0.96994 * 120.00068 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3856 2.1384 -1.0780 5 1 2.3649 1.8281 -1.9969 6 7 2.7944 3.4074 -0.6530 7 6 2.6955 3.4699 0.6471 8 17 3.0888 4.8415 1.6357 9 6 2.2131 2.2235 1.1086 10 6 1.9525 1.8509 2.5106 11 8 2.8344 1.3482 3.1802 12 7 0.7367 2.0672 3.0506 13 6 0.4778 1.6974 4.4442 14 1 1.3625 1.8750 5.0558 15 6 0.0436 0.2202 4.5391 16 6 -1.0398 0.1496 5.6295 17 6 -1.2257 1.5863 6.1598 18 6 -0.7347 2.4861 4.9982 19 1 -1.5078 2.5908 4.2368 20 6 -0.2976 3.8559 5.5212 21 7 -1.4779 4.6230 5.9269 22 6 -1.3322 5.8879 6.4309 23 1 -0.3473 6.3201 6.5288 24 6 -2.4505 6.6147 6.8159 25 7 -2.3105 7.8302 7.3008 26 14 -4.1539 5.8668 6.6472 27 1 -4.5023 5.1421 7.8956 28 1 -5.1464 6.9452 6.4074 29 1 -4.1674 4.9188 5.5043 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.0331 2.4678 2.5164 36 1 -0.3653 -0.1108 3.5845 37 1 0.8943 -0.4020 4.8172 38 1 -1.9745 -0.2157 5.2041 39 1 -0.7148 -0.5068 6.4368 40 1 -2.2765 1.7808 6.3744 41 1 -0.6193 1.7453 7.0515 42 1 0.3624 3.7237 6.3785 43 1 0.2320 4.3930 4.7343 44 1 -2.3624 4.2347 5.8393 45 1 -3.0919 8.3382 7.5694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732611772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:14 Heat of formation + Delta-G solvation = 0.177781 kcal Electronic energy + Delta-G solvation = -27762.179279 eV Core-core repulsion = 23840.560457 eV Total energy + Delta-G solvation = -3921.618823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.71895 -40.78680 -39.02331 -37.99386 -36.42606 -35.19390 -34.66587 -33.55279 -32.54780 -30.72355 -30.54200 -28.51029 -26.34889 -25.14804 -23.86355 -23.37550 -22.96936 -21.62907 -21.20257 -20.48589 -19.68685 -18.90162 -17.73592 -17.57140 -16.54012 -16.48446 -16.34250 -16.24188 -15.78638 -15.50296 -15.30165 -15.03462 -14.95573 -14.65642 -14.42011 -14.23932 -13.82403 -13.75070 -13.39863 -13.14705 -13.08198 -12.92265 -12.83499 -12.36467 -12.25997 -12.22547 -12.17059 -12.01348 -11.83665 -11.80039 -11.64301 -11.56358 -11.22934 -11.10104 -10.95323 -10.61418 -10.04081 -9.94664 -9.29076 -8.01556 -5.35647 0.33978 0.41528 0.95573 1.38147 1.43755 1.46497 1.50923 1.81973 2.32210 2.50096 3.29625 3.35516 3.40338 3.64108 3.69301 3.83427 3.92931 3.97567 4.06281 4.28095 4.41949 4.44507 4.48529 4.51718 4.59122 4.60491 4.66302 4.76476 4.78891 4.99223 5.01977 5.07465 5.07995 5.16659 5.25409 5.28429 5.31454 5.38326 5.53832 5.61937 5.76066 5.94392 6.19788 6.21868 6.51959 7.09195 7.19736 7.83735 8.06217 9.20434 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.003498 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.002739 B = 8002.488955 C = 9330.883841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C 0.171 3.829 4 N -0.425 5.425 5 H 0.466 0.534 6 N -0.295 5.295 7 C 0.143 3.857 8 Cl 0.009 6.991 9 C -0.298 4.298 10 C 0.605 3.395 11 O -0.568 6.568 12 N -0.698 5.698 13 C 0.151 3.849 14 H 0.072 0.928 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.096 4.096 19 H 0.095 0.905 20 C 0.164 3.836 21 N -0.751 5.751 22 C -0.238 4.238 23 H 0.048 0.952 24 C -0.065 4.065 25 N -0.987 5.987 26 Si 0.960 3.040 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.245 1.245 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.410 0.590 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.015 0.985 44 H 0.369 0.631 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -24.126 -20.223 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C 0.037 3.963 4 N -0.136 5.136 5 H 0.317 0.683 6 N -0.121 5.121 7 C -0.049 4.049 8 Cl 0.037 6.963 9 C -0.314 4.314 10 C 0.390 3.610 11 O -0.447 6.447 12 N -0.348 5.348 13 C 0.046 3.954 14 H 0.090 0.910 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.115 4.115 19 H 0.113 0.887 20 C 0.038 3.962 21 N -0.397 5.397 22 C -0.369 4.369 23 H 0.066 0.934 24 C -0.256 4.256 25 N -0.637 5.637 26 Si 0.786 3.214 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.169 1.169 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.111 0.889 35 H 0.246 0.754 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.202 0.798 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.223 -23.520 -20.639 31.725 hybrid contribution -0.965 0.743 0.537 1.331 sum 4.258 -22.777 -20.102 30.676 Atomic orbital electron populations 1.21795 0.91941 1.04132 1.02765 1.20607 0.97906 0.85659 1.06409 1.21848 0.93644 0.95908 0.84904 1.45859 1.49903 1.07890 1.09948 0.68330 1.77118 1.23870 1.00760 1.10352 1.22697 1.00877 0.90260 0.91022 1.98451 1.92398 1.40191 1.65309 1.19789 1.21524 0.95141 0.94902 1.17215 0.81898 0.76821 0.85017 1.90770 1.45620 1.45203 1.63071 1.45981 1.13014 1.62559 1.13231 1.21793 0.97228 0.95101 0.81284 0.91017 1.22435 0.98939 0.94150 1.00444 1.22062 0.99148 0.95642 0.98097 1.22337 1.01451 0.94779 0.96896 1.22486 0.97214 0.93041 0.98775 0.88683 1.20722 0.88785 0.90779 0.95906 1.42584 1.04713 1.14585 1.77825 1.19007 0.93616 0.91273 1.32964 0.93440 1.25577 1.02234 0.96596 1.01232 1.69906 1.30333 1.12677 1.50790 0.85342 0.79167 0.77790 0.79097 1.20146 1.22352 1.16929 0.92877 0.91498 0.89325 0.86186 0.88950 0.75402 0.89614 0.91554 0.89938 0.90818 0.91282 0.92240 0.96632 0.96722 0.79754 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 71.98 0.71 -0.14 16 2 C -0.07 -0.49 6.27 29.85 0.19 -0.30 16 3 C 0.17 2.53 6.55 42.15 0.28 2.81 16 4 N -0.42 -5.73 7.28 -46.80 -0.34 -6.07 16 5 H 0.47 2.22 8.96 -213.42 -1.91 0.31 16 6 N -0.30 -6.72 12.64 -48.95 -0.62 -7.34 16 7 C 0.14 3.75 7.89 85.66 0.68 4.42 16 8 Cl 0.01 0.25 29.19 -2.72 -0.08 0.17 16 9 C -0.30 -6.90 5.88 -20.14 -0.12 -7.02 16 10 C 0.61 16.03 7.25 86.65 0.63 16.66 16 11 O -0.57 -19.20 16.82 -4.06 -0.07 -19.27 16 12 N -0.70 -16.01 5.11 -440.76 -2.25 -18.26 16 13 C 0.15 3.69 2.60 46.07 0.12 3.81 16 14 H 0.07 2.16 7.57 -2.39 -0.02 2.14 16 15 C -0.12 -2.23 6.53 31.32 0.20 -2.03 16 16 C -0.11 -1.95 6.80 31.32 0.21 -1.74 16 17 C -0.12 -2.84 6.20 31.68 0.20 -2.65 16 18 C -0.10 -2.60 2.50 -9.49 -0.02 -2.62 16 19 H 0.09 2.34 8.02 -2.38 -0.02 2.32 16 20 C 0.16 6.36 5.70 86.38 0.49 6.85 16 21 N -0.75 -35.08 5.33 -343.44 -1.83 -36.91 16 22 C -0.24 -13.91 10.47 84.04 0.88 -13.03 16 23 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 24 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 25 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 26 Si 0.96 45.00 27.74 68.60 1.90 46.91 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.25 -10.06 6.52 99.48 0.65 -9.42 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 34 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 35 H 0.41 8.09 8.52 -92.71 -0.79 7.30 16 36 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.62 7.94 -2.39 -0.02 1.60 16 42 H 0.02 0.65 7.99 -2.39 -0.02 0.63 16 43 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.37 15.91 5.53 -92.71 -0.51 15.40 16 45 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -80.55 389.14 -0.31 -80.85 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -2.24 Total: 22.37 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.91 Total: 1.61 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -4.74 Total: -132.65 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.07 Total: -19.27 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -80.55 -0.31 -80.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732611772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.032 kcal (2) G-P(sol) polarization free energy of solvation -80.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds