Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47011 * 2 1 4 4 N 1.34235 * 126.28418 * 265.17737 * 3 2 1 5 5 H 0.96991 * 125.73907 * 0.02562 * 4 3 2 6 6 N 1.39930 * 108.52452 * 180.24447 * 4 3 2 7 7 C 1.30539 * 108.89402 * 359.75336 * 6 4 3 8 8 Cl 1.73601 * 126.00462 * 179.97438 * 7 6 4 9 9 C 1.38074 * 126.27841 * 85.00057 * 3 2 1 10 10 C 1.47387 * 126.42422 * 0.02750 * 9 3 2 11 11 O 1.21614 * 119.99466 * 269.71161 * 10 9 3 12 12 N 1.34771 * 120.00335 * 89.70695 * 10 9 3 13 13 C 1.46504 * 120.00192 * 179.97438 * 12 10 9 14 14 H 1.08994 * 110.05087 * 326.42020 * 13 12 10 15 15 C 1.53871 * 110.02977 * 87.83305 * 13 12 10 16 16 C 1.54268 * 106.59888 * 119.28599 * 15 13 12 17 17 C 1.54893 * 104.19217 * 23.60871 * 16 15 13 18 18 C 1.54261 * 110.03126 * 205.00038 * 13 12 10 19 19 H 1.08990 * 110.49202 * 335.91679 * 18 13 12 20 20 C 1.53004 * 110.48457 * 98.43058 * 18 13 12 21 21 N 1.46504 * 109.46932 * 184.99893 * 20 18 13 22 22 C 1.36934 * 119.99567 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00537 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99798 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00134 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00229 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47228 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46793 * 299.99987 * 26 24 22 29 29 H 1.48500 * 109.47000 * 60.00079 * 26 24 22 30 30 H 1.09000 * 109.46661 * 299.99709 * 1 2 3 31 31 H 1.08996 * 109.46857 * 59.99879 * 1 2 3 32 32 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47129 * 240.00350 * 2 1 3 34 34 H 1.08996 * 109.46857 * 120.00121 * 2 1 3 35 35 H 0.96999 * 120.00224 * 0.02562 * 12 10 9 36 36 H 1.09001 * 110.03522 * 238.57161 * 15 13 12 37 37 H 1.09001 * 110.03397 * 359.95525 * 15 13 12 38 38 H 1.09004 * 110.48668 * 142.28648 * 16 15 13 39 39 H 1.08996 * 110.48710 * 264.93560 * 16 15 13 40 40 H 1.08997 * 110.75628 * 203.74178 * 17 16 15 41 41 H 1.09001 * 110.75345 * 80.37421 * 17 16 15 42 42 H 1.08998 * 109.47524 * 64.99538 * 20 18 13 43 43 H 1.08997 * 109.47093 * 304.99438 * 20 18 13 44 44 H 0.97000 * 119.99825 * 359.97438 * 21 20 18 45 45 H 0.97005 * 119.99717 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3829 2.1395 -1.0782 5 1 2.3559 1.8315 -1.9975 6 7 2.7986 3.4059 -0.6524 7 6 2.7019 3.4675 0.6479 8 17 3.1035 4.8363 1.6374 9 6 2.2132 2.2234 1.1088 10 6 1.9521 1.8509 2.5108 11 8 0.8565 2.0515 2.9991 12 7 2.9273 1.2881 3.2514 13 6 2.6678 0.9184 4.6451 14 1 1.9708 1.6249 5.0956 15 6 2.0918 -0.5068 4.7138 16 6 3.0830 -1.3429 5.5494 17 6 3.8284 -0.2960 6.4139 18 6 3.9889 0.8986 5.4412 19 1 4.8348 0.7380 4.7729 20 6 4.1641 2.2037 6.2204 21 7 5.4765 2.2114 6.8714 22 6 5.8584 3.2860 7.6294 23 1 5.1923 4.1280 7.7470 24 6 7.1017 3.2931 8.2466 25 7 7.9134 2.2668 8.1037 26 14 7.6231 4.7592 9.2801 27 1 8.9834 4.5213 9.8261 28 1 7.6347 5.9809 8.4359 29 1 6.6654 4.9407 10.4004 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8012 1.1284 2.8620 36 1 1.1153 -0.4920 5.1977 37 1 2.0046 -0.9231 3.7102 38 1 2.5467 -2.0491 6.1834 39 1 3.7824 -1.8679 4.8988 40 1 4.8021 -0.6745 6.7249 41 1 3.2289 -0.0120 7.2789 42 1 3.3830 2.2832 6.9765 43 1 4.0935 3.0483 5.5350 44 1 6.0749 1.4554 6.7654 45 1 7.6428 1.5056 7.5667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732611774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = 22.758278 kcal Electronic energy + Delta-G solvation = -27597.750875 eV Core-core repulsion = 23677.111216 eV Total energy + Delta-G solvation = -3920.639659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.91308 -39.74777 -37.85393 -37.02035 -34.71383 -34.60551 -33.54939 -31.74277 -31.41917 -29.97041 -28.38590 -27.52047 -24.70680 -24.14261 -22.82964 -22.23923 -22.12339 -20.66590 -20.01326 -19.45902 -18.19317 -17.30179 -16.63288 -16.50132 -15.72156 -15.54667 -15.24231 -15.07698 -14.58680 -14.31736 -14.13269 -13.75347 -13.65588 -13.46019 -13.29018 -13.16077 -13.11244 -12.38066 -12.23233 -12.15742 -11.81065 -11.75205 -11.64020 -11.26495 -10.99257 -10.95915 -10.72444 -10.65537 -10.48539 -10.43946 -10.28116 -9.99420 -9.93882 -9.78255 -9.17566 -9.11875 -8.95554 -8.83165 -6.95163 -6.06324 -3.05102 1.15027 1.21833 1.86264 2.46830 2.54398 3.29050 3.55101 3.58659 3.75795 3.98808 4.29697 4.51429 4.61106 4.68450 4.74969 4.78094 4.89112 4.95741 5.00239 5.10296 5.35106 5.40602 5.47476 5.53752 5.54294 5.63290 5.67126 5.73270 5.75894 5.78419 5.86868 5.98862 6.05513 6.16136 6.23670 6.43116 6.49316 6.55512 6.57158 6.75905 6.86713 6.90756 7.50722 7.86029 8.20775 8.80372 9.27882 10.14190 10.29500 11.42501 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003212 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.550925 B = 8715.402928 C =10407.341957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 C 0.144 3.856 4 N -0.447 5.447 5 H 0.447 0.553 6 N -0.276 5.276 7 C 0.159 3.841 8 Cl 0.029 6.971 9 C -0.267 4.267 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.708 5.708 13 C 0.146 3.854 14 H 0.095 0.905 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.103 4.103 19 H 0.078 0.922 20 C 0.166 3.834 21 N -0.741 5.741 22 C -0.328 4.328 23 H 0.063 0.937 24 C -0.046 4.046 25 N -0.946 5.946 26 Si 1.079 2.921 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.295 1.295 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.366 0.634 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.204 -8.517 -20.187 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 C 0.012 3.988 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.101 5.101 7 C -0.033 4.033 8 Cl 0.057 6.943 9 C -0.282 4.282 10 C 0.381 3.619 11 O -0.404 6.404 12 N -0.359 5.359 13 C 0.042 3.958 14 H 0.113 0.887 15 C -0.168 4.168 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.122 4.122 19 H 0.096 0.904 20 C 0.039 3.961 21 N -0.387 5.387 22 C -0.459 4.459 23 H 0.081 0.919 24 C -0.243 4.243 25 N -0.592 5.592 26 Si 0.910 3.090 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.563 -6.744 -19.785 24.918 hybrid contribution -0.766 -1.142 -1.004 1.702 sum -14.329 -7.886 -20.789 26.451 Atomic orbital electron populations 1.21783 0.92826 1.02909 1.03369 1.20398 0.97546 0.87870 1.04789 1.21432 0.96140 0.95122 0.86117 1.45841 1.51396 1.09398 1.08941 0.70649 1.77196 1.23146 0.98853 1.10884 1.22666 0.99465 0.90574 0.90626 1.98464 1.91790 1.39471 1.64541 1.19824 1.18980 0.94597 0.94817 1.17084 0.84307 0.76714 0.83752 1.90793 1.23594 1.53569 1.72400 1.46176 1.14883 1.62060 1.12745 1.21730 0.97693 0.96252 0.80166 0.88691 1.22536 0.99197 0.94794 1.00311 1.22381 0.97882 0.97702 0.98243 1.22457 1.00804 0.94105 0.97531 1.22448 0.95731 0.97101 0.96962 0.90377 1.20622 0.88934 0.92903 0.93660 1.42321 1.14855 1.21311 1.60210 1.20037 1.02423 0.97406 1.26052 0.91861 1.25739 0.92997 1.03957 1.01635 1.70892 1.37892 1.07590 1.42795 0.83258 0.76047 0.74075 0.75658 1.21063 1.22301 1.22286 0.90982 0.92463 0.91171 0.89613 0.88466 0.76484 0.91210 0.91750 0.91758 0.91870 0.91033 0.90976 0.96043 0.96245 0.80061 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.90 37.16 0.37 -0.54 16 2 C -0.07 -0.38 6.27 -27.88 -0.17 -0.55 16 3 C 0.14 1.26 6.55 -81.60 -0.53 0.72 16 4 N -0.45 -3.59 7.28 33.86 0.25 -3.34 16 5 H 0.45 1.83 8.96 -182.73 -1.64 0.19 16 6 N -0.28 -3.27 12.64 33.18 0.42 -2.85 16 7 C 0.16 2.09 7.89 -16.90 -0.13 1.96 16 8 Cl 0.03 0.41 29.19 -51.86 -1.51 -1.11 16 9 C -0.27 -3.24 5.88 -105.04 -0.62 -3.85 16 10 C 0.60 8.20 7.26 -12.54 -0.09 8.11 16 11 O -0.53 -8.95 16.76 5.26 0.09 -8.86 16 12 N -0.71 -8.82 4.98 -53.81 -0.27 -9.08 16 13 C 0.15 1.98 2.82 -66.81 -0.19 1.79 16 14 H 0.10 1.49 7.26 -51.93 -0.38 1.12 16 15 C -0.13 -1.47 6.59 -25.61 -0.17 -1.64 16 16 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 17 C -0.11 -1.59 6.19 -24.74 -0.15 -1.75 16 18 C -0.10 -1.59 2.59 -88.96 -0.23 -1.82 16 19 H 0.08 1.20 7.73 -51.93 -0.40 0.79 16 20 C 0.17 3.41 5.54 -4.04 -0.02 3.39 16 21 N -0.74 -18.73 5.49 -59.91 -0.33 -19.06 16 22 C -0.33 -9.44 9.99 -15.06 -0.15 -9.59 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 25 N -0.95 -29.39 13.70 55.49 0.76 -28.63 16 26 Si 1.08 26.40 29.92 -169.99 -5.09 21.32 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.40 4.41 8.34 -40.82 -0.34 4.07 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 42 H 0.02 0.46 8.02 -51.93 -0.42 0.04 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.37 9.33 6.47 -40.82 -0.26 9.06 16 45 H 0.25 7.72 6.77 -40.82 -0.28 7.44 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -35.57 389.69 -10.14 -45.71 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.97 Total: 6.81 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.36 Total: -6.78 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.83 Total: -62.96 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -5.09 Total: 21.32 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.51 Total: -1.11 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.57 -10.14 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732611774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.469 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds