Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47011 * 2 1 4 4 N 1.34235 * 126.28418 * 265.17737 * 3 2 1 5 5 H 0.96991 * 125.73907 * 0.02562 * 4 3 2 6 6 N 1.39930 * 108.52452 * 180.24447 * 4 3 2 7 7 C 1.30539 * 108.89402 * 359.75336 * 6 4 3 8 8 Cl 1.73601 * 126.00462 * 179.97438 * 7 6 4 9 9 C 1.38074 * 126.27841 * 85.00057 * 3 2 1 10 10 C 1.47387 * 126.42422 * 0.02750 * 9 3 2 11 11 O 1.21614 * 119.99466 * 269.71161 * 10 9 3 12 12 N 1.34771 * 120.00335 * 89.70695 * 10 9 3 13 13 C 1.46504 * 120.00192 * 179.97438 * 12 10 9 14 14 H 1.08994 * 110.05087 * 326.42020 * 13 12 10 15 15 C 1.53871 * 110.02977 * 87.83305 * 13 12 10 16 16 C 1.54268 * 106.59888 * 119.28599 * 15 13 12 17 17 C 1.54893 * 104.19217 * 23.60871 * 16 15 13 18 18 C 1.54261 * 110.03126 * 205.00038 * 13 12 10 19 19 H 1.08990 * 110.49202 * 335.91679 * 18 13 12 20 20 C 1.53004 * 110.48457 * 98.43058 * 18 13 12 21 21 N 1.46504 * 109.46932 * 184.99893 * 20 18 13 22 22 C 1.36934 * 119.99567 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00537 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99798 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00134 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00229 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47228 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46793 * 299.99987 * 26 24 22 29 29 H 1.48500 * 109.47000 * 60.00079 * 26 24 22 30 30 H 1.09000 * 109.46661 * 299.99709 * 1 2 3 31 31 H 1.08996 * 109.46857 * 59.99879 * 1 2 3 32 32 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47129 * 240.00350 * 2 1 3 34 34 H 1.08996 * 109.46857 * 120.00121 * 2 1 3 35 35 H 0.96999 * 120.00224 * 0.02562 * 12 10 9 36 36 H 1.09001 * 110.03522 * 238.57161 * 15 13 12 37 37 H 1.09001 * 110.03397 * 359.95525 * 15 13 12 38 38 H 1.09004 * 110.48668 * 142.28648 * 16 15 13 39 39 H 1.08996 * 110.48710 * 264.93560 * 16 15 13 40 40 H 1.08997 * 110.75628 * 203.74178 * 17 16 15 41 41 H 1.09001 * 110.75345 * 80.37421 * 17 16 15 42 42 H 1.08998 * 109.47524 * 64.99538 * 20 18 13 43 43 H 1.08997 * 109.47093 * 304.99438 * 20 18 13 44 44 H 0.97000 * 119.99825 * 359.97438 * 21 20 18 45 45 H 0.97005 * 119.99717 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3829 2.1395 -1.0782 5 1 2.3559 1.8315 -1.9975 6 7 2.7986 3.4059 -0.6524 7 6 2.7019 3.4675 0.6479 8 17 3.1035 4.8363 1.6374 9 6 2.2132 2.2234 1.1088 10 6 1.9521 1.8509 2.5108 11 8 0.8565 2.0515 2.9991 12 7 2.9273 1.2881 3.2514 13 6 2.6678 0.9184 4.6451 14 1 1.9708 1.6249 5.0956 15 6 2.0918 -0.5068 4.7138 16 6 3.0830 -1.3429 5.5494 17 6 3.8284 -0.2960 6.4139 18 6 3.9889 0.8986 5.4412 19 1 4.8348 0.7380 4.7729 20 6 4.1641 2.2037 6.2204 21 7 5.4765 2.2114 6.8714 22 6 5.8584 3.2860 7.6294 23 1 5.1923 4.1280 7.7470 24 6 7.1017 3.2931 8.2466 25 7 7.9134 2.2668 8.1037 26 14 7.6231 4.7592 9.2801 27 1 8.9834 4.5213 9.8261 28 1 7.6347 5.9809 8.4359 29 1 6.6654 4.9407 10.4004 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8012 1.1284 2.8620 36 1 1.1153 -0.4920 5.1977 37 1 2.0046 -0.9231 3.7102 38 1 2.5467 -2.0491 6.1834 39 1 3.7824 -1.8679 4.8988 40 1 4.8021 -0.6745 6.7249 41 1 3.2289 -0.0120 7.2789 42 1 3.3830 2.2832 6.9765 43 1 4.0935 3.0483 5.5350 44 1 6.0749 1.4554 6.7654 45 1 7.6428 1.5056 7.5667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732611774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = -2.217412 kcal Electronic energy + Delta-G solvation = -27598.833902 eV Core-core repulsion = 23677.111216 eV Total energy + Delta-G solvation = -3921.722686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.74618 -40.86796 -39.07120 -38.02522 -36.63867 -35.19772 -34.70039 -33.29810 -32.57501 -30.75247 -30.00925 -28.56861 -26.12725 -25.25379 -24.30801 -23.44999 -22.99398 -21.76726 -21.11494 -20.52491 -19.43580 -18.95866 -17.71506 -17.60043 -16.94824 -16.50659 -16.32767 -15.97021 -15.79300 -15.63263 -15.44991 -15.05340 -14.97931 -14.93909 -14.50103 -14.42164 -13.78621 -13.58494 -13.18866 -12.95857 -12.89938 -12.82795 -12.63398 -12.53463 -12.39120 -12.24770 -12.00756 -11.89990 -11.84117 -11.78478 -11.71012 -11.44258 -11.25409 -11.09691 -10.92652 -10.64103 -10.09674 -9.97401 -9.11307 -8.40830 -5.33919 0.30766 0.38479 0.92455 1.43296 1.57254 1.66844 1.78858 1.83692 2.28484 2.69587 3.34835 3.37900 3.40357 3.61601 3.65469 3.81994 3.86730 3.98283 4.04800 4.24219 4.35194 4.38727 4.42704 4.48204 4.52922 4.57086 4.60649 4.73392 4.75112 4.93150 4.95914 4.98544 5.03073 5.07551 5.15971 5.23507 5.27752 5.32983 5.45989 5.56157 5.58659 5.91660 6.17443 6.47892 6.50497 7.09407 7.16172 7.99586 8.11044 9.11604 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003212 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.550925 B = 8715.402928 C =10407.341957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.066 4.066 3 C 0.171 3.829 4 N -0.424 5.424 5 H 0.467 0.533 6 N -0.294 5.294 7 C 0.143 3.857 8 Cl 0.009 6.991 9 C -0.298 4.298 10 C 0.604 3.396 11 O -0.566 6.566 12 N -0.700 5.700 13 C 0.153 3.847 14 H 0.069 0.931 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.092 4.092 19 H 0.083 0.917 20 C 0.167 3.833 21 N -0.749 5.749 22 C -0.338 4.338 23 H 0.059 0.941 24 C -0.099 4.099 25 N -0.971 5.971 26 Si 1.125 2.875 27 H -0.289 1.289 28 H -0.280 1.280 29 H -0.279 1.279 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.013 0.987 43 H 0.005 0.995 44 H 0.364 0.636 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.803 -10.417 -22.017 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C 0.037 3.963 4 N -0.135 5.135 5 H 0.317 0.683 6 N -0.120 5.120 7 C -0.049 4.049 8 Cl 0.036 6.964 9 C -0.313 4.313 10 C 0.389 3.611 11 O -0.444 6.444 12 N -0.350 5.350 13 C 0.048 3.952 14 H 0.087 0.913 15 C -0.159 4.159 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.111 4.111 19 H 0.101 0.899 20 C 0.041 3.959 21 N -0.394 5.394 22 C -0.469 4.469 23 H 0.077 0.923 24 C -0.291 4.291 25 N -0.619 5.619 26 Si 0.950 3.050 27 H -0.215 1.215 28 H -0.207 1.207 29 H -0.205 1.205 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.246 0.754 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.023 0.977 44 H 0.196 0.804 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.177 -8.655 -21.671 27.305 hybrid contribution -0.641 -0.571 -0.516 1.001 sum -14.818 -9.225 -22.187 28.231 Atomic orbital electron populations 1.21760 0.92956 1.03852 1.02088 1.20621 0.97175 0.85740 1.06936 1.21854 0.93592 0.95952 0.84939 1.45851 1.49732 1.08025 1.09921 0.68279 1.77117 1.23799 1.00808 1.10256 1.22689 1.00682 0.90419 0.91076 1.98446 1.92034 1.40640 1.65235 1.19783 1.21508 0.95198 0.94826 1.17247 0.83679 0.75824 0.84339 1.90770 1.25173 1.55120 1.73345 1.46097 1.15171 1.61615 1.12130 1.21549 0.95877 0.97482 0.80332 0.91254 1.22468 0.99034 0.92817 1.01583 1.22317 0.97700 0.96816 0.97897 1.22421 1.00524 0.94665 0.97407 1.22292 0.97053 0.94786 0.96983 0.89865 1.20706 0.86508 0.95423 0.93291 1.42453 1.16367 1.20434 1.60163 1.20356 1.02454 0.98099 1.26018 0.92325 1.27140 0.93336 1.05777 1.02837 1.70991 1.38692 1.08245 1.44004 0.82665 0.75710 0.71718 0.74939 1.21460 1.20676 1.20476 0.94267 0.91754 0.89136 0.85622 0.88156 0.75435 0.91099 0.89739 0.90082 0.90129 0.92195 0.92350 0.96942 0.97665 0.80356 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.90 71.98 0.71 -0.66 16 2 C -0.07 -0.50 6.27 29.85 0.19 -0.31 16 3 C 0.17 2.57 6.55 42.15 0.28 2.85 16 4 N -0.42 -5.75 7.28 -46.79 -0.34 -6.09 16 5 H 0.47 2.22 8.96 -213.44 -1.91 0.31 16 6 N -0.29 -6.68 12.64 -48.95 -0.62 -7.30 16 7 C 0.14 3.75 7.89 85.66 0.68 4.43 16 8 Cl 0.01 0.25 29.19 -2.72 -0.08 0.17 16 9 C -0.30 -7.01 5.88 -20.13 -0.12 -7.13 16 10 C 0.60 16.49 7.26 86.65 0.63 17.12 16 11 O -0.57 -19.53 16.76 -4.08 -0.07 -19.60 16 12 N -0.70 -17.03 4.98 -442.41 -2.20 -19.23 16 13 C 0.15 4.09 2.82 45.71 0.13 4.21 16 14 H 0.07 2.25 7.26 -2.39 -0.02 2.23 16 15 C -0.12 -2.48 6.59 31.32 0.21 -2.27 16 16 C -0.11 -2.16 6.83 31.67 0.22 -1.95 16 17 C -0.11 -3.16 6.19 31.89 0.20 -2.97 16 18 C -0.09 -2.84 2.59 -9.72 -0.03 -2.86 16 19 H 0.08 2.51 7.73 -2.39 -0.02 2.49 16 20 C 0.17 7.08 5.54 86.38 0.48 7.56 16 21 N -0.75 -38.82 5.49 -343.44 -1.89 -40.70 16 22 C -0.34 -19.77 9.99 84.03 0.84 -18.93 16 23 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 24 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 25 N -0.97 -61.11 13.70 21.65 0.30 -60.81 16 26 Si 1.13 53.26 29.92 68.60 2.05 55.31 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 35 H 0.41 8.58 8.34 -92.71 -0.77 7.81 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.44 7.92 -2.39 -0.02 1.42 16 38 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.79 7.97 -2.39 -0.02 1.78 16 42 H 0.01 0.56 8.02 -2.39 -0.02 0.54 16 43 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.36 19.02 6.47 -92.71 -0.60 18.42 16 45 H 0.25 15.26 6.77 -92.70 -0.63 14.63 16 Total: -1.00 -79.36 389.69 -0.08 -79.44 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -2.10 Total: 25.14 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.87 Total: -6.33 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -4.75 Total: -134.14 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.07 Total: -19.60 kcal Atomic # 14 Polarization: 53.26 SS G_CDS: 2.05 Total: 55.31 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -79.36 -0.08 -79.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732611774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.226 kcal (2) G-P(sol) polarization free energy of solvation -79.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds