Wall clock time and date at job start Sat Apr 11 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50710 * 109.47343 * 2 1 4 4 N 1.34230 * 126.28317 * 265.19511 * 3 2 1 5 5 H 0.97000 * 125.73941 * 359.95046 * 4 3 2 6 6 N 1.39926 * 108.52467 * 180.26429 * 4 3 2 7 7 C 1.30532 * 108.89153 * 359.72817 * 6 4 3 8 8 Cl 1.73603 * 126.00505 * 180.02562 * 7 6 4 9 9 C 1.38065 * 126.27773 * 84.99389 * 3 2 1 10 10 C 1.47386 * 126.42424 * 0.02562 * 9 3 2 11 11 O 1.21610 * 119.99823 * 269.70826 * 10 9 3 12 12 N 1.34777 * 120.00264 * 89.43722 * 10 9 3 13 13 C 1.46496 * 120.00344 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.02060 * 34.93161 * 13 12 10 15 15 C 1.53881 * 110.02865 * 273.54278 * 13 12 10 16 16 C 1.54270 * 106.59547 * 240.71330 * 15 13 12 17 17 C 1.54884 * 104.19714 * 23.61012 * 16 15 13 18 18 C 1.54268 * 110.03433 * 156.37649 * 13 12 10 19 19 H 1.08997 * 110.48551 * 214.35256 * 18 13 12 20 20 C 1.52997 * 110.48475 * 336.99647 * 18 13 12 21 21 N 1.46499 * 109.46808 * 184.99952 * 20 18 13 22 22 C 1.36944 * 119.99975 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99793 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99966 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00273 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99613 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47559 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46777 * 120.00371 * 26 24 22 29 29 H 1.48501 * 109.47010 * 239.99908 * 26 24 22 30 30 H 1.08999 * 109.47436 * 299.99772 * 1 2 3 31 31 H 1.09002 * 109.47418 * 60.00092 * 1 2 3 32 32 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47436 * 240.00228 * 2 1 3 34 34 H 1.09002 * 109.47418 * 119.99908 * 2 1 3 35 35 H 0.97004 * 119.99647 * 359.97438 * 12 10 9 36 36 H 1.08996 * 110.03333 * 359.97438 * 15 13 12 37 37 H 1.08998 * 110.02962 * 121.43048 * 15 13 12 38 38 H 1.09000 * 110.47889 * 142.29104 * 16 15 13 39 39 H 1.09000 * 110.48211 * 264.93200 * 16 15 13 40 40 H 1.09011 * 110.75187 * 80.37156 * 17 16 15 41 41 H 1.08998 * 110.75884 * 203.73832 * 17 16 15 42 42 H 1.09000 * 109.47019 * 304.99693 * 20 18 13 43 43 H 1.08998 * 109.47206 * 65.00401 * 20 18 13 44 44 H 0.96998 * 120.00620 * 0.02562 * 21 20 18 45 45 H 0.96999 * 120.00328 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3826 2.1396 -1.0782 5 1 2.3563 1.8313 -1.9976 6 7 2.7989 3.4058 -0.6524 7 6 2.7024 3.4673 0.6478 8 17 3.1035 4.8362 1.6373 9 6 2.2131 2.2235 1.1088 10 6 1.9517 1.8511 2.5107 11 8 0.8562 2.0517 2.9989 12 7 2.9252 1.2831 3.2498 13 6 2.6652 0.9125 4.6431 14 1 1.6354 0.5729 4.7529 15 6 2.9246 2.1162 5.5659 16 6 4.0472 1.6939 6.5361 17 6 4.7918 0.5619 5.7857 18 6 3.6393 -0.1993 5.0847 19 1 3.1510 -0.8791 5.7828 20 6 4.1649 -0.9648 3.8687 21 7 4.9915 -2.0876 4.3185 22 6 5.5729 -2.9208 3.4003 23 1 5.4224 -2.7498 2.3446 24 6 6.3566 -3.9843 3.8265 25 7 6.5404 -4.1923 5.1131 26 14 7.1503 -5.1203 2.5739 27 1 6.7919 -4.6740 1.2037 28 1 8.6259 -5.0823 2.7363 29 1 6.6645 -6.5075 2.7860 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7977 1.1192 2.8590 36 1 3.2443 2.9760 4.9771 37 1 2.0208 2.3602 6.1241 38 1 4.7192 2.5301 6.7290 39 1 3.6246 1.3198 7.4686 40 1 5.4843 0.9751 5.0522 41 1 5.3137 -0.0886 6.4875 42 1 3.3246 -1.3427 3.2863 43 1 4.7646 -0.2970 3.2504 44 1 5.1263 -2.2414 5.2667 45 1 7.0877 -4.9357 5.4109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732611776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:20 Heat of formation + Delta-G solvation = 26.266193 kcal Electronic energy + Delta-G solvation = -28012.682550 eV Core-core repulsion = 24092.195005 eV Total energy + Delta-G solvation = -3920.487544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81540 -39.76909 -37.74647 -37.05697 -34.44479 -34.38756 -33.37836 -31.63410 -31.43813 -29.83951 -28.58566 -27.46290 -24.65263 -24.36103 -22.67283 -22.33666 -22.11958 -20.29566 -19.97097 -19.18325 -18.19514 -17.20314 -16.74858 -15.91470 -15.58401 -15.43140 -15.05476 -14.82880 -14.73918 -14.38926 -14.14534 -13.91537 -13.57312 -13.37059 -13.07347 -12.96794 -12.85264 -12.33128 -12.24851 -12.10857 -11.63465 -11.51488 -11.48676 -11.26331 -10.95820 -10.90556 -10.84131 -10.79524 -10.47088 -10.34006 -10.31937 -9.98982 -9.90306 -9.72933 -9.72262 -9.01275 -8.91142 -8.88891 -6.95603 -5.80381 -3.08918 1.21365 1.27272 1.94261 2.57550 2.62983 3.39424 3.42102 3.44691 3.47356 4.16484 4.48783 4.52023 4.68224 4.75277 4.84832 4.91254 5.00635 5.12162 5.16053 5.29416 5.48286 5.52972 5.59822 5.62286 5.66903 5.71096 5.76710 5.82262 5.88767 5.95633 5.97586 6.10166 6.14044 6.22595 6.32355 6.51544 6.55279 6.67522 6.69962 6.73725 6.82265 6.99778 7.63660 7.65903 8.31784 8.38428 9.49917 10.07926 10.42484 11.42476 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.003733 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.950960 B = 7498.228641 C = 8985.524127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C 0.153 3.847 4 N -0.446 5.446 5 H 0.448 0.552 6 N -0.278 5.278 7 C 0.160 3.840 8 Cl 0.019 6.981 9 C -0.269 4.269 10 C 0.598 3.402 11 O -0.533 6.533 12 N -0.706 5.706 13 C 0.148 3.852 14 H 0.089 0.911 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.113 4.113 18 C -0.107 4.107 19 H 0.088 0.912 20 C 0.165 3.835 21 N -0.729 5.729 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.405 0.595 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 14.303 -7.898 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C 0.020 3.980 4 N -0.155 5.155 5 H 0.294 0.706 6 N -0.103 5.103 7 C -0.033 4.033 8 Cl 0.047 6.953 9 C -0.284 4.284 10 C 0.382 3.618 11 O -0.409 6.409 12 N -0.359 5.359 13 C 0.043 3.957 14 H 0.108 0.892 15 C -0.170 4.170 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.126 4.126 19 H 0.106 0.894 20 C 0.037 3.963 21 N -0.374 5.374 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.322 15.156 -8.637 20.269 hybrid contribution 0.894 -1.146 -0.330 1.490 sum -9.428 14.010 -8.967 19.120 Atomic orbital electron populations 1.21763 0.92864 1.03029 1.03027 1.20466 0.97459 0.87692 1.05471 1.21509 0.95389 0.95103 0.85986 1.45835 1.51306 1.09277 1.09050 0.70564 1.77137 1.23197 0.99166 1.10807 1.22522 0.99981 0.90147 0.90613 1.98419 1.92012 1.39879 1.65000 1.19796 1.19216 0.94491 0.94916 1.17078 0.84173 0.76959 0.83630 1.90772 1.23633 1.53870 1.72656 1.46292 1.15501 1.61257 1.12835 1.21651 1.00204 0.94155 0.79641 0.89247 1.22577 0.98975 0.97922 0.97555 1.22386 0.97088 0.98559 0.98249 1.22510 0.96951 0.96311 0.99263 1.22475 0.95640 0.95660 0.98819 0.89351 1.20570 0.93211 0.89349 0.93180 1.42348 1.58220 1.30138 1.06655 1.19231 1.23174 1.05474 0.89167 0.91291 1.24721 1.00963 0.99241 0.95906 1.69661 1.43682 1.32168 1.12474 0.86157 0.79027 0.80861 0.80352 1.20653 1.21879 1.21866 0.91120 0.92654 0.91031 0.89425 0.87885 0.75724 0.91423 0.91434 0.91953 0.91676 0.91468 0.90855 0.96304 0.96781 0.78172 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.15 0.37 -0.88 16 2 C -0.07 -0.62 6.27 -27.88 -0.17 -0.80 16 3 C 0.15 1.60 6.55 -81.60 -0.53 1.07 16 4 N -0.45 -4.16 7.28 33.86 0.25 -3.91 16 5 H 0.45 2.50 8.96 -182.73 -1.64 0.86 16 6 N -0.28 -3.40 12.64 33.18 0.42 -2.98 16 7 C 0.16 2.08 7.89 -16.91 -0.13 1.95 16 8 Cl 0.02 0.23 29.19 -51.86 -1.51 -1.28 16 9 C -0.27 -3.48 5.88 -105.04 -0.62 -4.10 16 10 C 0.60 8.53 7.25 -12.54 -0.09 8.44 16 11 O -0.53 -9.08 16.78 5.27 0.09 -8.99 16 12 N -0.71 -9.42 4.37 -53.81 -0.24 -9.65 16 13 C 0.15 2.01 3.10 -66.81 -0.21 1.80 16 14 H 0.09 1.28 7.60 -51.93 -0.39 0.89 16 15 C -0.13 -1.62 6.59 -25.61 -0.17 -1.79 16 16 C -0.13 -1.49 6.83 -25.07 -0.17 -1.66 16 17 C -0.11 -1.62 6.19 -24.74 -0.15 -1.77 16 18 C -0.11 -1.61 2.85 -88.96 -0.25 -1.86 16 19 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 20 C 0.16 3.03 4.72 -4.04 -0.02 3.01 16 21 N -0.73 -17.44 5.49 -59.91 -0.33 -17.77 16 22 C -0.24 -6.41 9.99 -15.06 -0.15 -6.56 16 23 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 26 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.41 5.31 6.48 -40.82 -0.26 5.05 16 36 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.00 7.97 -51.92 -0.41 0.58 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.01 0.26 6.40 -51.93 -0.33 -0.07 16 44 H 0.38 9.75 7.64 -40.82 -0.31 9.44 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -32.38 387.78 -10.14 -42.52 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.96 Total: 9.75 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.40 Total: -3.59 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.83 Total: -61.00 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.51 Total: -1.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.38 -10.14 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732611776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.787 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds