Wall clock time and date at job start Sat Apr 11 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50710 * 109.47343 * 2 1 4 4 N 1.34230 * 126.28317 * 265.19511 * 3 2 1 5 5 H 0.97000 * 125.73941 * 359.95046 * 4 3 2 6 6 N 1.39926 * 108.52467 * 180.26429 * 4 3 2 7 7 C 1.30532 * 108.89153 * 359.72817 * 6 4 3 8 8 Cl 1.73603 * 126.00505 * 180.02562 * 7 6 4 9 9 C 1.38065 * 126.27773 * 84.99389 * 3 2 1 10 10 C 1.47386 * 126.42424 * 0.02562 * 9 3 2 11 11 O 1.21610 * 119.99823 * 269.70826 * 10 9 3 12 12 N 1.34777 * 120.00264 * 89.43722 * 10 9 3 13 13 C 1.46496 * 120.00344 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.02060 * 34.93161 * 13 12 10 15 15 C 1.53881 * 110.02865 * 273.54278 * 13 12 10 16 16 C 1.54270 * 106.59547 * 240.71330 * 15 13 12 17 17 C 1.54884 * 104.19714 * 23.61012 * 16 15 13 18 18 C 1.54268 * 110.03433 * 156.37649 * 13 12 10 19 19 H 1.08997 * 110.48551 * 214.35256 * 18 13 12 20 20 C 1.52997 * 110.48475 * 336.99647 * 18 13 12 21 21 N 1.46499 * 109.46808 * 184.99952 * 20 18 13 22 22 C 1.36944 * 119.99975 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99793 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99966 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00273 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99613 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47559 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46777 * 120.00371 * 26 24 22 29 29 H 1.48501 * 109.47010 * 239.99908 * 26 24 22 30 30 H 1.08999 * 109.47436 * 299.99772 * 1 2 3 31 31 H 1.09002 * 109.47418 * 60.00092 * 1 2 3 32 32 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47436 * 240.00228 * 2 1 3 34 34 H 1.09002 * 109.47418 * 119.99908 * 2 1 3 35 35 H 0.97004 * 119.99647 * 359.97438 * 12 10 9 36 36 H 1.08996 * 110.03333 * 359.97438 * 15 13 12 37 37 H 1.08998 * 110.02962 * 121.43048 * 15 13 12 38 38 H 1.09000 * 110.47889 * 142.29104 * 16 15 13 39 39 H 1.09000 * 110.48211 * 264.93200 * 16 15 13 40 40 H 1.09011 * 110.75187 * 80.37156 * 17 16 15 41 41 H 1.08998 * 110.75884 * 203.73832 * 17 16 15 42 42 H 1.09000 * 109.47019 * 304.99693 * 20 18 13 43 43 H 1.08998 * 109.47206 * 65.00401 * 20 18 13 44 44 H 0.96998 * 120.00620 * 0.02562 * 21 20 18 45 45 H 0.96999 * 120.00328 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3826 2.1396 -1.0782 5 1 2.3563 1.8313 -1.9976 6 7 2.7989 3.4058 -0.6524 7 6 2.7024 3.4673 0.6478 8 17 3.1035 4.8362 1.6373 9 6 2.2131 2.2235 1.1088 10 6 1.9517 1.8511 2.5107 11 8 0.8562 2.0517 2.9989 12 7 2.9252 1.2831 3.2498 13 6 2.6652 0.9125 4.6431 14 1 1.6354 0.5729 4.7529 15 6 2.9246 2.1162 5.5659 16 6 4.0472 1.6939 6.5361 17 6 4.7918 0.5619 5.7857 18 6 3.6393 -0.1993 5.0847 19 1 3.1510 -0.8791 5.7828 20 6 4.1649 -0.9648 3.8687 21 7 4.9915 -2.0876 4.3185 22 6 5.5729 -2.9208 3.4003 23 1 5.4224 -2.7498 2.3446 24 6 6.3566 -3.9843 3.8265 25 7 6.5404 -4.1923 5.1131 26 14 7.1503 -5.1203 2.5739 27 1 6.7919 -4.6740 1.2037 28 1 8.6259 -5.0823 2.7363 29 1 6.6645 -6.5075 2.7860 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7977 1.1192 2.8590 36 1 3.2443 2.9760 4.9771 37 1 2.0208 2.3602 6.1241 38 1 4.7192 2.5301 6.7290 39 1 3.6246 1.3198 7.4686 40 1 5.4843 0.9751 5.0522 41 1 5.3137 -0.0886 6.4875 42 1 3.3246 -1.3427 3.2863 43 1 4.7646 -0.2970 3.2504 44 1 5.1263 -2.2414 5.2667 45 1 7.0877 -4.9357 5.4109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732611776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:20 Heat of formation + Delta-G solvation = 5.131862 kcal Electronic energy + Delta-G solvation = -28013.599003 eV Core-core repulsion = 24092.195005 eV Total energy + Delta-G solvation = -3921.403998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.71497 -40.92177 -38.96004 -37.98432 -36.20886 -35.19122 -34.51594 -33.27301 -32.52953 -30.72631 -30.13886 -28.54947 -26.30737 -25.24755 -24.04740 -23.63135 -22.99858 -21.38484 -21.00858 -20.46564 -19.27805 -18.92077 -17.81098 -17.06476 -16.65675 -16.47130 -16.31941 -16.06894 -15.89949 -15.60481 -15.23028 -15.10842 -14.94761 -14.69444 -14.50462 -14.29226 -13.77696 -13.53107 -13.17393 -13.09046 -12.93452 -12.84203 -12.62936 -12.38729 -12.26210 -12.23244 -12.10757 -11.93297 -11.84258 -11.76815 -11.61209 -11.50418 -11.42841 -11.04879 -10.88012 -10.60649 -10.03454 -9.94093 -8.94468 -7.90912 -5.18748 0.31937 0.40988 0.97584 1.49514 1.50036 1.50296 1.59797 1.79239 2.35153 2.58867 3.37739 3.42753 3.49568 3.67410 3.72265 3.85968 3.92822 4.02829 4.22970 4.23473 4.39087 4.44366 4.51807 4.56841 4.60620 4.63770 4.73263 4.77080 4.82566 4.90806 4.96483 5.02146 5.08269 5.16291 5.27592 5.29268 5.30346 5.40811 5.51079 5.56043 5.61334 5.93000 6.19325 6.31124 6.52789 7.20414 7.38377 8.14666 8.37575 9.32905 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.003733 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.950960 B = 7498.228641 C = 8985.524127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C 0.166 3.834 4 N -0.426 5.426 5 H 0.465 0.535 6 N -0.291 5.291 7 C 0.149 3.851 8 Cl 0.019 6.981 9 C -0.297 4.297 10 C 0.605 3.395 11 O -0.564 6.564 12 N -0.701 5.701 13 C 0.155 3.845 14 H 0.083 0.917 15 C -0.125 4.125 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.098 4.098 19 H 0.082 0.918 20 C 0.167 3.833 21 N -0.741 5.741 22 C -0.238 4.238 23 H 0.077 0.923 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.967 3.033 27 H -0.264 1.264 28 H -0.297 1.297 29 H -0.296 1.296 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.407 0.593 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.024 0.976 44 H 0.374 0.626 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 14.663 -9.576 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C 0.032 3.968 4 N -0.137 5.137 5 H 0.316 0.684 6 N -0.117 5.117 7 C -0.043 4.043 8 Cl 0.047 6.953 9 C -0.312 4.312 10 C 0.390 3.610 11 O -0.443 6.443 12 N -0.353 5.353 13 C 0.050 3.950 14 H 0.101 0.899 15 C -0.164 4.164 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.118 4.118 19 H 0.100 0.900 20 C 0.041 3.959 21 N -0.384 5.384 22 C -0.370 4.370 23 H 0.095 0.905 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.797 3.203 27 H -0.188 1.188 28 H -0.224 1.224 29 H -0.223 1.223 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.042 0.958 44 H 0.206 0.794 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.621 15.550 -10.371 21.498 hybrid contribution 0.931 -1.232 0.139 1.551 sum -9.690 14.318 -10.232 20.090 Atomic orbital electron populations 1.21727 0.92529 1.03654 1.02364 1.20570 0.97608 0.86500 1.06324 1.21728 0.93945 0.95560 0.85538 1.45841 1.49892 1.08212 1.09774 0.68443 1.77082 1.23654 1.00500 1.10472 1.22621 1.00476 0.90297 0.90948 1.98410 1.92010 1.39812 1.65051 1.19798 1.21305 0.95325 0.94787 1.17200 0.83559 0.76194 0.84092 1.90751 1.24833 1.55252 1.73444 1.46244 1.15426 1.60895 1.12703 1.21564 0.99196 0.94160 0.80122 0.89932 1.22525 0.99489 0.97075 0.97319 1.22325 0.96774 0.97969 0.98093 1.22450 0.96605 0.96800 0.99002 1.22344 0.96232 0.95736 0.97441 0.89957 1.20683 0.92428 0.88194 0.94627 1.42551 1.58714 1.31241 1.05873 1.19647 1.22082 1.05304 0.89991 0.90475 1.25489 1.02383 1.01186 0.97539 1.69812 1.44999 1.32855 1.14312 0.85158 0.77501 0.78569 0.79055 1.18809 1.22409 1.22325 0.93875 0.91187 0.89786 0.86238 0.89331 0.75504 0.91457 0.90614 0.90509 0.90718 0.91948 0.92472 0.96340 0.95828 0.79365 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.89 71.98 0.71 -1.45 16 2 C -0.07 -1.08 6.27 29.85 0.19 -0.89 16 3 C 0.17 3.20 6.55 42.15 0.28 3.48 16 4 N -0.43 -7.00 7.28 -46.79 -0.34 -7.34 16 5 H 0.47 3.84 8.96 -213.43 -1.91 1.92 16 6 N -0.29 -6.70 12.64 -48.95 -0.62 -7.32 16 7 C 0.15 3.74 7.89 85.66 0.68 4.41 16 8 Cl 0.02 0.46 29.19 -2.72 -0.08 0.38 16 9 C -0.30 -7.43 5.88 -20.14 -0.12 -7.55 16 10 C 0.60 16.99 7.25 86.65 0.63 17.62 16 11 O -0.56 -19.20 16.78 -4.06 -0.07 -19.27 16 12 N -0.70 -18.24 4.37 -442.40 -1.94 -20.17 16 13 C 0.15 4.08 3.10 45.72 0.14 4.22 16 14 H 0.08 2.34 7.60 -2.39 -0.02 2.32 16 15 C -0.13 -2.91 6.59 31.32 0.21 -2.71 16 16 C -0.11 -2.53 6.83 31.67 0.22 -2.31 16 17 C -0.11 -3.12 6.19 31.88 0.20 -2.92 16 18 C -0.10 -2.93 2.85 -9.72 -0.03 -2.96 16 19 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 20 C 0.17 6.07 4.72 86.38 0.41 6.48 16 21 N -0.74 -35.46 5.49 -343.45 -1.89 -37.34 16 22 C -0.24 -12.64 9.99 84.03 0.84 -11.80 16 23 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 25 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 26 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 28 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 35 H 0.41 10.33 6.48 -92.71 -0.60 9.73 16 36 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.81 7.97 -2.38 -0.02 1.79 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.02 0.84 6.40 -2.39 -0.02 0.82 16 44 H 0.37 19.28 7.64 -92.71 -0.71 18.57 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -69.24 387.78 0.01 -69.23 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -2.18 Total: 32.74 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 4.81 Total: -0.01 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -4.50 Total: -129.66 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.07 Total: -19.27 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -0.08 Total: 0.38 kcal Total: -69.24 0.01 -69.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732611776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.361 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds