Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35465 * 126.43322 * 2 1 4 4 Cl 1.73596 * 127.23581 * 359.97438 * 3 2 1 5 5 C 1.41542 * 105.52182 * 180.02562 * 3 2 1 6 6 C 1.47670 * 126.45821 * 179.97438 * 5 3 2 7 7 O 1.21572 * 119.99895 * 353.62628 * 6 5 3 8 8 N 1.34771 * 119.99987 * 173.62049 * 6 5 3 9 9 C 1.46927 * 120.63286 * 173.01559 * 8 6 5 10 10 C 1.53199 * 108.77408 * 126.41593 * 9 8 6 11 11 C 1.53042 * 109.31129 * 54.64073 * 10 9 8 12 12 C 1.53005 * 109.45807 * 178.62894 * 11 10 9 13 13 N 1.46493 * 109.46158 * 58.65458 * 11 10 9 14 14 C 1.36936 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99964 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00237 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99878 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99920 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.47067 * 270.00216 * 18 16 14 20 20 H 1.48500 * 109.47237 * 29.99867 * 18 16 14 21 21 H 1.48497 * 109.47395 * 150.00235 * 18 16 14 22 22 C 1.53041 * 109.53574 * 298.63142 * 11 10 9 23 23 C 1.46934 * 120.63296 * 353.04621 * 8 6 5 24 24 N 1.31822 * 107.08205 * 0.24264 * 5 3 2 25 25 N 1.28479 * 110.13391 * 359.59087 * 24 5 3 26 26 C 1.46498 * 124.93522 * 180.20073 * 25 24 5 27 27 H 1.08997 * 109.46785 * 89.97630 * 1 2 3 28 28 H 1.09004 * 109.46680 * 209.97697 * 1 2 3 29 29 H 1.08994 * 109.47204 * 329.97091 * 1 2 3 30 30 H 1.08997 * 109.58408 * 6.63286 * 9 8 6 31 31 H 1.09002 * 109.58917 * 246.20295 * 9 8 6 32 32 H 1.08995 * 109.49782 * 294.68155 * 10 9 8 33 33 H 1.09000 * 109.52011 * 174.60336 * 10 9 8 34 34 H 1.09005 * 109.46578 * 300.02425 * 12 11 10 35 35 H 1.09001 * 109.46993 * 60.02086 * 12 11 10 36 36 H 1.09001 * 109.46851 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00268 * 359.97438 * 13 11 10 38 38 H 0.97008 * 119.99525 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.49631 * 181.31884 * 22 11 10 40 40 H 1.08996 * 109.50084 * 301.41641 * 22 11 10 41 41 H 1.09004 * 109.57968 * 353.36787 * 23 8 6 42 42 H 1.08993 * 109.58885 * 113.79544 * 23 8 6 43 43 H 1.08997 * 109.46982 * 270.25267 * 26 25 24 44 44 H 1.08997 * 109.46782 * 30.25624 * 26 25 24 45 45 H 1.09001 * 109.46718 * 150.24738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7558 -0.0006 5 6 3.6337 0.5847 -0.0006 6 6 4.8774 1.3810 -0.0014 7 8 4.8250 2.5899 -0.1184 8 7 6.0704 0.7675 0.1278 9 6 7.3212 1.5234 -0.0234 10 6 8.1893 1.2934 1.2177 11 6 8.3850 -0.2099 1.4271 12 6 9.2799 -0.4425 2.6461 13 7 9.0171 -0.7899 0.2396 14 6 9.2920 -2.1307 0.1962 15 1 9.0432 -2.7605 1.0375 16 6 9.8906 -2.6804 -0.9292 17 7 10.1553 -3.9690 -0.9706 18 14 10.3204 -1.5913 -2.3846 19 1 9.1712 -1.5442 -3.3241 20 1 10.6232 -0.2192 -1.9039 21 1 11.5084 -2.1444 -3.0831 22 6 7.0263 -0.8755 1.6579 23 6 6.1450 -0.6702 0.4218 24 7 3.5457 -0.7306 -0.0063 25 7 2.3126 -1.0913 -0.0006 26 6 1.8446 -2.4795 -0.0001 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5143 30 1 7.0967 2.5855 -0.1206 31 1 7.8524 1.1774 -0.9101 32 1 7.6966 1.7214 2.0907 33 1 9.1593 1.7704 1.0771 34 1 10.2479 0.0309 2.4817 35 1 8.8097 -0.0110 3.5297 36 1 9.4197 -1.5132 2.7951 37 1 9.2403 -0.2244 -0.5161 38 1 10.5732 -4.3532 -1.7573 39 1 7.1685 -1.9423 1.8302 40 1 6.5445 -0.4272 2.5268 41 1 5.1444 -1.0553 0.6184 42 1 6.5803 -1.1950 -0.4285 43 1 1.7277 -2.8239 -1.0276 44 1 2.5723 -3.1080 0.5132 45 1 0.8857 -2.5394 0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733865559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 68.955018 kcal Electronic energy + Delta-G solvation = -28683.401658 eV Core-core repulsion = 24764.765240 eV Total energy + Delta-G solvation = -3918.636418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.93400 -39.76675 -37.76066 -36.55249 -34.58598 -33.78484 -32.75051 -32.24038 -30.76416 -29.68554 -28.19740 -27.56566 -27.05368 -24.07137 -23.27078 -22.85371 -21.86243 -20.95377 -19.51721 -18.04626 -17.70922 -17.14149 -16.77422 -16.44829 -15.58431 -14.97175 -14.94628 -14.47051 -14.21672 -13.93211 -13.70039 -13.67552 -13.45803 -13.37580 -13.10293 -13.03919 -12.76070 -12.69210 -12.49207 -12.18742 -11.91146 -11.88266 -11.41213 -11.28243 -11.18782 -10.94363 -10.81177 -10.71524 -10.67891 -10.17606 -10.03246 -9.75574 -9.58934 -9.43731 -9.26230 -8.91079 -8.81688 -8.19125 -7.22904 -5.75169 -3.09511 1.42075 1.70369 1.78538 2.53356 3.27533 3.38391 3.41672 3.47024 3.47604 4.15672 4.23927 4.53976 4.60850 4.66592 4.76863 5.02895 5.10066 5.12144 5.19458 5.32891 5.34904 5.39579 5.44005 5.55103 5.57950 5.69833 5.81622 5.86563 6.05641 6.07568 6.20991 6.25858 6.36400 6.38450 6.51934 6.59556 6.65044 6.78435 6.87349 7.04891 7.09720 7.59513 7.79549 8.01578 8.40557 8.44496 9.23020 9.96226 10.16662 11.43250 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.003696 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.018005 B = 7573.742863 C = 8298.729729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.023 3.977 3 C -0.105 4.105 4 Cl -0.012 7.012 5 C 0.009 3.991 6 C 0.595 3.405 7 O -0.533 6.533 8 N -0.587 5.587 9 C 0.117 3.883 10 C -0.132 4.132 11 C 0.203 3.797 12 C -0.149 4.149 13 N -0.742 5.742 14 C -0.232 4.232 15 H 0.092 0.908 16 C 0.005 3.995 17 N -0.935 5.935 18 Si 0.877 3.123 19 H -0.286 1.286 20 H -0.277 1.277 21 H -0.293 1.293 22 C -0.131 4.131 23 C 0.096 3.904 24 N -0.236 5.236 25 N -0.282 5.282 26 C 0.085 3.915 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.360 0.640 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 6.614 4.160 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.142 4.142 4 Cl 0.016 6.984 5 C -0.151 4.151 6 C 0.380 3.620 7 O -0.408 6.408 8 N -0.319 5.319 9 C -0.006 4.006 10 C -0.171 4.171 11 C 0.112 3.888 12 C -0.208 4.208 13 N -0.386 5.386 14 C -0.362 4.362 15 H 0.109 0.891 16 C -0.190 4.190 17 N -0.584 5.584 18 Si 0.708 3.292 19 H -0.213 1.213 20 H -0.203 1.203 21 H -0.219 1.219 22 C -0.171 4.171 23 C -0.027 4.027 24 N -0.071 5.071 25 N -0.069 5.069 26 C -0.055 4.055 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.194 0.806 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.304 6.046 4.130 21.583 hybrid contribution 0.062 1.177 -1.163 1.656 sum -20.241 7.222 2.967 21.695 Atomic orbital electron populations 1.20394 0.85954 1.04187 1.03701 1.21097 0.95343 0.85881 1.07879 1.20451 0.92010 0.87502 1.14253 1.98342 1.90799 1.12066 1.97166 1.21899 0.94213 0.89412 1.09602 1.16866 0.81488 0.86126 0.77478 1.90782 1.86168 1.12691 1.51204 1.47965 1.04675 1.11094 1.68179 1.21588 0.83649 0.96926 0.98411 1.22133 0.99626 0.97443 0.97872 1.19514 0.91112 0.89978 0.88207 1.22189 0.99507 1.02298 0.96851 1.42882 1.73326 1.06980 1.15406 1.18968 1.32496 0.82966 1.01759 0.89050 1.24605 1.01208 0.95413 0.97778 1.69692 1.48778 1.10180 1.29725 0.86669 0.78008 0.80411 0.84146 1.21254 1.20348 1.21921 1.22267 0.96527 1.02195 0.96145 1.22415 1.02330 0.78623 0.99293 1.73780 1.00690 1.13527 1.19059 1.45564 1.02921 1.07422 1.51038 1.22266 1.01849 0.76462 1.04950 0.89868 0.90653 0.89354 0.89422 0.91305 0.91349 0.90775 0.93213 0.94388 0.92063 0.80631 0.93219 0.90290 0.93402 0.87200 0.89857 0.89245 0.87772 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 9.99 36.01 0.36 -0.14 16 2 C 0.02 0.25 6.94 -81.90 -0.57 -0.32 16 3 C -0.10 -1.45 6.79 -39.31 -0.27 -1.72 16 4 Cl -0.01 -0.16 27.95 -51.86 -1.45 -1.61 16 5 C 0.01 0.15 6.82 -82.76 -0.56 -0.42 16 6 C 0.60 10.71 7.69 -12.41 -0.10 10.61 16 7 O -0.53 -10.42 15.32 5.30 0.08 -10.34 16 8 N -0.59 -10.35 2.97 -173.94 -0.52 -10.87 16 9 C 0.12 1.98 6.17 -3.71 -0.02 1.95 16 10 C -0.13 -2.14 4.96 -26.61 -0.13 -2.27 16 11 C 0.20 3.74 0.74 -131.78 -0.10 3.64 16 12 C -0.15 -2.65 8.44 37.16 0.31 -2.34 16 13 N -0.74 -16.52 3.94 -47.19 -0.19 -16.70 16 14 C -0.23 -6.11 9.16 -15.06 -0.14 -6.25 16 15 H 0.09 2.58 6.93 -52.49 -0.36 2.22 16 16 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 17 N -0.94 -28.57 13.97 55.49 0.78 -27.80 16 18 Si 0.88 21.87 27.74 -169.99 -4.71 17.15 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 22 C -0.13 -2.32 4.71 -26.61 -0.13 -2.44 16 23 C 0.10 1.70 5.85 -3.71 -0.02 1.68 16 24 N -0.24 -3.42 8.45 33.42 0.28 -3.14 16 25 N -0.28 -3.06 3.72 -63.68 -0.24 -3.29 16 26 C 0.08 0.50 11.12 59.85 0.67 1.16 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.27 7.02 -51.93 -0.36 -0.09 16 29 H 0.09 0.51 8.03 -51.93 -0.42 0.10 16 30 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 31 H 0.07 1.23 6.94 -51.93 -0.36 0.87 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 1.19 7.27 -51.93 -0.38 0.82 16 37 H 0.36 8.11 4.32 -40.82 -0.18 7.93 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 1.51 7.31 -51.93 -0.38 1.13 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.11 1.84 4.17 -70.87 -0.30 1.54 16 42 H 0.08 1.72 7.74 -51.93 -0.40 1.32 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.27 6.98 -51.93 -0.36 -0.10 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -33.73 366.81 -7.64 -41.37 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.41 Total: 6.50 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.79 Total: 3.20 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.12 Total: -61.80 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.45 Total: -1.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.73 -7.64 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733865559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.321 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds