Wall clock time and date at job start Sat Apr 11 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35465 * 126.43322 * 2 1 4 4 Cl 1.73596 * 127.23581 * 359.97438 * 3 2 1 5 5 C 1.41542 * 105.52182 * 180.02562 * 3 2 1 6 6 C 1.47670 * 126.45821 * 179.97438 * 5 3 2 7 7 O 1.21572 * 119.99895 * 353.62628 * 6 5 3 8 8 N 1.34771 * 119.99987 * 173.62049 * 6 5 3 9 9 C 1.46927 * 120.63286 * 173.01559 * 8 6 5 10 10 C 1.53199 * 108.77408 * 126.41593 * 9 8 6 11 11 C 1.53042 * 109.31129 * 54.64073 * 10 9 8 12 12 C 1.53005 * 109.45807 * 178.62894 * 11 10 9 13 13 N 1.46493 * 109.46158 * 58.65458 * 11 10 9 14 14 C 1.36936 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99964 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00237 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99878 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99920 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.47067 * 270.00216 * 18 16 14 20 20 H 1.48500 * 109.47237 * 29.99867 * 18 16 14 21 21 H 1.48497 * 109.47395 * 150.00235 * 18 16 14 22 22 C 1.53041 * 109.53574 * 298.63142 * 11 10 9 23 23 C 1.46934 * 120.63296 * 353.04621 * 8 6 5 24 24 N 1.31822 * 107.08205 * 0.24264 * 5 3 2 25 25 N 1.28479 * 110.13391 * 359.59087 * 24 5 3 26 26 C 1.46498 * 124.93522 * 180.20073 * 25 24 5 27 27 H 1.08997 * 109.46785 * 89.97630 * 1 2 3 28 28 H 1.09004 * 109.46680 * 209.97697 * 1 2 3 29 29 H 1.08994 * 109.47204 * 329.97091 * 1 2 3 30 30 H 1.08997 * 109.58408 * 6.63286 * 9 8 6 31 31 H 1.09002 * 109.58917 * 246.20295 * 9 8 6 32 32 H 1.08995 * 109.49782 * 294.68155 * 10 9 8 33 33 H 1.09000 * 109.52011 * 174.60336 * 10 9 8 34 34 H 1.09005 * 109.46578 * 300.02425 * 12 11 10 35 35 H 1.09001 * 109.46993 * 60.02086 * 12 11 10 36 36 H 1.09001 * 109.46851 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00268 * 359.97438 * 13 11 10 38 38 H 0.97008 * 119.99525 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.49631 * 181.31884 * 22 11 10 40 40 H 1.08996 * 109.50084 * 301.41641 * 22 11 10 41 41 H 1.09004 * 109.57968 * 353.36787 * 23 8 6 42 42 H 1.08993 * 109.58885 * 113.79544 * 23 8 6 43 43 H 1.08997 * 109.46982 * 270.25267 * 26 25 24 44 44 H 1.08997 * 109.46782 * 30.25624 * 26 25 24 45 45 H 1.09001 * 109.46718 * 150.24738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7558 -0.0006 5 6 3.6337 0.5847 -0.0006 6 6 4.8774 1.3810 -0.0014 7 8 4.8250 2.5899 -0.1184 8 7 6.0704 0.7675 0.1278 9 6 7.3212 1.5234 -0.0234 10 6 8.1893 1.2934 1.2177 11 6 8.3850 -0.2099 1.4271 12 6 9.2799 -0.4425 2.6461 13 7 9.0171 -0.7899 0.2396 14 6 9.2920 -2.1307 0.1962 15 1 9.0432 -2.7605 1.0375 16 6 9.8906 -2.6804 -0.9292 17 7 10.1553 -3.9690 -0.9706 18 14 10.3204 -1.5913 -2.3846 19 1 9.1712 -1.5442 -3.3241 20 1 10.6232 -0.2192 -1.9039 21 1 11.5084 -2.1444 -3.0831 22 6 7.0263 -0.8755 1.6579 23 6 6.1450 -0.6702 0.4218 24 7 3.5457 -0.7306 -0.0063 25 7 2.3126 -1.0913 -0.0006 26 6 1.8446 -2.4795 -0.0001 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5143 30 1 7.0967 2.5855 -0.1206 31 1 7.8524 1.1774 -0.9101 32 1 7.6966 1.7214 2.0907 33 1 9.1593 1.7704 1.0771 34 1 10.2479 0.0309 2.4817 35 1 8.8097 -0.0110 3.5297 36 1 9.4197 -1.5132 2.7951 37 1 9.2403 -0.2244 -0.5161 38 1 10.5732 -4.3532 -1.7573 39 1 7.1685 -1.9423 1.8302 40 1 6.5445 -0.4272 2.5268 41 1 5.1444 -1.0553 0.6184 42 1 6.5803 -1.1950 -0.4285 43 1 1.7277 -2.8239 -1.0276 44 1 2.5723 -3.1080 0.5132 45 1 0.8857 -2.5394 0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733865559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:39 Heat of formation + Delta-G solvation = 47.073096 kcal Electronic energy + Delta-G solvation = -28684.350529 eV Core-core repulsion = 24764.765240 eV Total energy + Delta-G solvation = -3919.585289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.87667 -41.16498 -39.24410 -37.53713 -36.13203 -34.76624 -34.10345 -33.49842 -32.14821 -31.57129 -29.46920 -28.40922 -27.91573 -25.67578 -24.81677 -24.28013 -23.09048 -21.91711 -20.82117 -19.77841 -19.44735 -18.11036 -17.75362 -17.60335 -16.88838 -16.47039 -16.29214 -15.80194 -15.73865 -15.27014 -15.07376 -14.82820 -14.49103 -14.43148 -14.38327 -14.14025 -13.78941 -13.69460 -13.63074 -13.41042 -13.03206 -12.98621 -12.81040 -12.74575 -12.64701 -12.57704 -12.49181 -12.10735 -11.99733 -11.82970 -11.67868 -11.44821 -11.14899 -11.02666 -10.71474 -10.23608 -9.79974 -9.62124 -9.18653 -7.93965 -5.24227 0.33490 0.77455 0.92768 1.38292 1.39284 1.45765 1.61530 2.03407 2.18992 2.52449 3.21368 3.38482 3.49459 3.55889 3.67831 3.90481 3.99844 4.07771 4.13765 4.28214 4.31645 4.35700 4.43598 4.57317 4.61387 4.65084 4.72798 4.76026 4.84476 4.86399 4.90927 4.98535 5.02490 5.06438 5.13825 5.16672 5.30683 5.34066 5.55421 5.62487 5.78003 5.89655 6.30523 6.33964 6.67294 7.06864 7.16724 7.93718 8.12057 9.27762 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.003696 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.018005 B = 7573.742863 C = 8298.729729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.046 3.954 3 C -0.132 4.132 4 Cl -0.016 7.016 5 C -0.024 4.024 6 C 0.592 3.408 7 O -0.555 6.555 8 N -0.590 5.590 9 C 0.114 3.886 10 C -0.122 4.122 11 C 0.193 3.807 12 C -0.143 4.143 13 N -0.743 5.743 14 C -0.197 4.197 15 H 0.066 0.934 16 C -0.061 4.061 17 N -0.985 5.985 18 Si 0.935 3.065 19 H -0.289 1.289 20 H -0.254 1.254 21 H -0.302 1.302 22 C -0.125 4.125 23 C 0.107 3.893 24 N -0.259 5.259 25 N -0.272 5.272 26 C 0.070 3.930 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.361 0.639 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.124 0.876 42 H 0.049 0.951 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.266 7.674 4.831 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.170 4.170 4 Cl 0.012 6.988 5 C -0.183 4.183 6 C 0.379 3.621 7 O -0.433 6.433 8 N -0.322 5.322 9 C -0.008 4.008 10 C -0.160 4.160 11 C 0.104 3.896 12 C -0.202 4.202 13 N -0.386 5.386 14 C -0.328 4.328 15 H 0.084 0.916 16 C -0.252 4.252 17 N -0.637 5.637 18 Si 0.764 3.236 19 H -0.216 1.216 20 H -0.179 1.179 21 H -0.229 1.229 22 C -0.165 4.165 23 C -0.016 4.016 24 N -0.095 5.095 25 N -0.061 5.061 26 C -0.067 4.067 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.195 0.805 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.067 0.933 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.702 7.147 4.834 24.286 hybrid contribution 0.629 0.791 -1.288 1.637 sum -22.073 7.938 3.546 23.724 Atomic orbital electron populations 1.20641 0.82326 1.06011 1.05265 1.21738 0.97134 0.84570 1.04656 1.20681 0.91855 0.88250 1.16199 1.98329 1.90642 1.12515 1.97292 1.21723 0.94208 0.90183 1.12193 1.17181 0.82111 0.86137 0.76698 1.90748 1.86650 1.13627 1.52227 1.47993 1.05028 1.10808 1.68323 1.21619 0.83594 0.97196 0.98395 1.22068 1.00405 0.95371 0.98178 1.19824 0.91144 0.91625 0.87030 1.22103 0.99623 1.00838 0.97625 1.42919 1.73360 1.05439 1.16889 1.18892 1.29434 0.84422 1.00090 0.91587 1.25226 1.02826 0.96471 1.00636 1.69848 1.51273 1.12138 1.30437 0.85706 0.77009 0.79889 0.80962 1.21633 1.17862 1.22926 1.22179 0.96290 1.01025 0.96962 1.22230 1.02858 0.78727 0.97764 1.73580 1.02934 1.12965 1.20019 1.46050 1.01918 1.09218 1.48892 1.22773 1.03545 0.73839 1.06574 0.88234 0.87362 0.89014 0.88783 0.92466 0.89544 0.89380 0.93202 0.91292 0.94562 0.80546 0.93845 0.92231 0.91291 0.85946 0.93276 0.87758 0.87959 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.99 71.24 0.71 0.04 16 2 C 0.05 0.84 6.94 41.33 0.29 1.13 16 3 C -0.13 -3.52 6.79 22.44 0.15 -3.36 16 4 Cl -0.02 -0.42 27.95 -2.72 -0.08 -0.50 16 5 C -0.02 -0.77 6.82 42.45 0.29 -0.48 16 6 C 0.59 21.22 7.69 86.74 0.67 21.88 16 7 O -0.56 -21.67 15.32 -3.94 -0.06 -21.73 16 8 N -0.59 -20.58 2.97 -822.49 -2.44 -23.03 16 9 C 0.11 3.76 6.17 86.36 0.53 4.29 16 10 C -0.12 -3.68 4.96 30.67 0.15 -3.53 16 11 C 0.19 6.91 0.74 3.63 0.00 6.91 16 12 C -0.14 -4.86 8.44 71.98 0.61 -4.25 16 13 N -0.74 -32.78 3.94 -303.22 -1.19 -33.98 16 14 C -0.20 -10.58 9.16 84.03 0.77 -9.81 16 15 H 0.07 3.86 6.93 -2.91 -0.02 3.84 16 16 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 17 N -0.98 -62.12 13.97 21.65 0.30 -61.81 16 18 Si 0.93 45.80 27.74 68.60 1.90 47.70 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.25 -11.29 6.52 99.48 0.65 -10.64 16 21 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 22 C -0.12 -4.34 4.71 30.67 0.14 -4.19 16 23 C 0.11 3.81 5.85 86.36 0.51 4.32 16 24 N -0.26 -7.29 8.45 -48.17 -0.41 -7.70 16 25 N -0.27 -5.30 3.72 -355.39 -1.32 -6.62 16 26 C 0.07 0.60 11.12 127.77 1.42 2.02 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 0.18 7.02 -2.38 -0.02 0.16 16 29 H 0.09 0.74 8.03 -2.39 -0.02 0.73 16 30 H 0.09 2.99 7.00 -2.39 -0.02 2.97 16 31 H 0.06 2.00 6.94 -2.39 -0.02 1.99 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.39 7.27 -2.39 -0.02 1.38 16 37 H 0.36 15.89 4.32 -92.71 -0.40 15.49 16 38 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 39 H 0.06 2.30 7.31 -2.39 -0.02 2.28 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.12 4.10 4.17 -26.90 -0.11 3.99 16 42 H 0.05 2.08 7.74 -2.39 -0.02 2.06 16 43 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.14 0.08 6.98 -2.39 -0.02 0.06 16 Total: -1.00 -76.09 366.81 3.88 -72.21 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.46 Total: 23.49 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.71 Total: 11.94 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -5.06 Total: -133.13 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -76.09 3.88 -72.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733865559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.287 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds