Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53002 * 109.47003 * 2 1 4 4 N 1.46498 * 109.46697 * 181.69226 * 3 2 1 5 5 C 1.34783 * 119.99704 * 84.66092 * 4 3 2 6 6 O 1.21284 * 120.00066 * 175.12743 * 5 4 3 7 7 C 1.50700 * 120.00230 * 355.13694 * 5 4 3 8 8 N 1.46495 * 109.47214 * 179.97438 * 7 5 4 9 9 C 1.35051 * 126.03378 * 124.99963 * 8 7 5 10 10 C 1.35371 * 107.72452 * 179.72396 * 9 8 7 11 11 Cl 1.73600 * 126.04440 * 180.22353 * 10 9 8 12 12 C 1.39922 * 107.91273 * 0.23521 * 10 9 8 13 13 N 1.30853 * 108.21221 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00223 * 264.65760 * 4 3 2 15 15 H 1.09002 * 110.88368 * 180.30731 * 14 4 3 16 16 C 1.55154 * 111.00122 * 56.42923 * 14 4 3 17 17 C 1.54324 * 102.94138 * 277.42608 * 16 14 4 18 18 N 1.47019 * 107.27121 * 337.80735 * 17 16 14 19 19 C 1.36944 * 125.65188 * 178.89382 * 18 17 16 20 20 H 1.07995 * 120.00091 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99593 * 0.02771 * 19 18 17 22 22 N 1.31621 * 120.00133 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00060 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47119 * 89.99765 * 23 21 19 25 25 H 1.48498 * 109.47360 * 210.00273 * 23 21 19 26 26 H 1.48507 * 109.46962 * 330.00045 * 23 21 19 27 27 C 1.47425 * 108.70459 * 358.93906 * 18 17 16 28 28 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46904 * 300.00005 * 1 2 3 30 30 H 1.09000 * 109.46808 * 60.00065 * 1 2 3 31 31 H 1.08999 * 109.46904 * 239.99994 * 2 1 3 32 32 H 1.09000 * 109.46808 * 119.99935 * 2 1 3 33 33 H 1.08995 * 109.46770 * 61.69685 * 3 2 1 34 34 H 1.09002 * 109.47098 * 301.69335 * 3 2 1 35 35 H 1.09004 * 109.46916 * 59.99490 * 7 5 4 36 36 H 1.09000 * 109.46797 * 300.00213 * 7 5 4 37 37 H 1.07996 * 126.13379 * 359.97438 * 9 8 7 38 38 H 1.07996 * 125.89971 * 179.97438 * 12 10 9 39 39 H 1.08995 * 110.72369 * 35.78979 * 16 14 4 40 40 H 1.09000 * 110.71791 * 158.88697 * 16 14 4 41 41 H 1.08997 * 109.88336 * 97.22545 * 17 16 14 42 42 H 1.09000 * 109.88291 * 218.39510 * 17 16 14 43 43 H 0.96991 * 120.00325 * 179.97438 * 22 21 19 44 44 H 1.08991 * 110.37297 * 265.28929 * 27 18 17 45 45 H 1.09006 * 110.36895 * 142.96234 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5045 1.4426 -0.0408 5 6 4.1457 1.3455 -1.2223 6 8 5.3545 1.4344 -1.2654 7 6 3.3607 1.1268 -2.4900 8 7 4.2804 1.0573 -3.6281 9 6 4.3632 0.0486 -4.5222 10 6 5.3279 0.3687 -5.4165 11 17 5.8227 -0.5941 -6.7736 12 6 5.8558 1.6125 -5.0533 13 7 5.2312 2.0242 -3.9797 14 6 4.2720 1.5484 1.2026 15 1 5.3430 1.5395 1.0001 16 6 3.8839 0.4192 2.1933 17 6 2.6092 0.9718 2.8652 18 7 2.6324 2.4335 2.7094 19 6 1.6666 3.2986 3.1501 20 1 1.7768 4.3602 2.9857 21 6 0.5459 2.8108 3.8083 22 7 0.4114 1.5168 4.0082 23 14 -0.7711 3.9907 4.4101 24 1 -1.7874 4.1835 3.3446 25 1 -1.4232 3.4292 5.6204 26 1 -0.1498 5.2976 4.7439 27 6 3.8671 2.8138 1.9992 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.7018 1.9474 0.9048 34 1 1.6522 1.9650 -0.8744 35 1 2.6660 1.9543 -2.6345 36 1 2.8031 0.1932 -2.4154 37 1 3.7643 -0.8500 -4.5257 38 1 6.6434 2.1413 -5.5694 39 1 3.6679 -0.5057 1.6585 40 1 4.6736 0.2627 2.9282 41 1 1.7252 0.5610 2.3775 42 1 2.6057 0.7119 3.9237 43 1 -0.3714 1.1760 4.4684 44 1 4.6480 3.0796 2.7115 45 1 3.6736 3.6439 1.3198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753319118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = 80.505048 kcal Electronic energy + Delta-G solvation = -28505.486426 eV Core-core repulsion = 24587.350855 eV Total energy + Delta-G solvation = -3918.135571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.47261 -40.03124 -37.67222 -36.55975 -35.11375 -33.47820 -32.89729 -31.82685 -30.22359 -29.43549 -28.06047 -27.11858 -25.69521 -24.41356 -22.20688 -21.47390 -21.29315 -20.54182 -20.15640 -18.70071 -17.69565 -17.30141 -16.99818 -16.04402 -15.58510 -14.81708 -14.76164 -14.65909 -14.50166 -14.39056 -13.85265 -13.59434 -13.44509 -13.36718 -13.07171 -12.60573 -12.36870 -12.08818 -11.96919 -11.84725 -11.65259 -11.53021 -11.38615 -11.17155 -11.03749 -10.96138 -10.69027 -10.62282 -10.40778 -10.24910 -10.20708 -10.00366 -9.91674 -9.74391 -9.36620 -8.75772 -8.56758 -8.32933 -6.91814 -5.83782 -3.18103 1.54421 1.75741 2.49194 2.58248 2.65298 3.16815 3.31199 3.38823 3.39287 4.29596 4.39378 4.45884 4.51493 4.78656 4.85915 5.20885 5.25788 5.28541 5.34571 5.37458 5.42750 5.44824 5.54325 5.62309 5.76573 5.80274 5.97361 6.09805 6.17380 6.20873 6.26461 6.37986 6.42720 6.53196 6.54709 6.57046 6.61842 6.73765 7.01246 7.41759 7.45712 7.49599 7.66555 7.72130 8.11973 8.27950 9.09642 9.68588 10.33726 11.26688 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002700 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.777207 B =10367.000695 C =10683.546541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.078 3.922 4 N -0.580 5.580 5 C 0.499 3.501 6 O -0.525 6.525 7 C 0.115 3.885 8 N -0.349 5.349 9 C 0.072 3.928 10 C -0.187 4.187 11 Cl -0.048 7.048 12 C 0.055 3.945 13 N -0.248 5.248 14 C 0.125 3.875 15 H 0.099 0.901 16 C -0.158 4.158 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.124 3.876 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.253 0.747 44 H 0.032 0.968 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -5.737 -15.887 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.044 4.044 4 N -0.312 5.312 5 C 0.284 3.716 6 O -0.400 6.400 7 C -0.010 4.010 8 N -0.131 5.131 9 C -0.075 4.075 10 C -0.225 4.225 11 Cl -0.020 7.020 12 C -0.132 4.132 13 N -0.068 5.068 14 C 0.021 3.979 15 H 0.117 0.883 16 C -0.197 4.197 17 C 0.043 3.957 18 N -0.329 5.329 19 C -0.360 4.360 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.199 0.801 38 H 0.207 0.793 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.068 -4.826 -14.871 16.155 hybrid contribution -0.727 -0.280 -0.271 0.825 sum 3.341 -5.106 -15.142 16.326 Atomic orbital electron populations 1.21673 0.94927 1.01412 1.02594 1.22071 0.96684 0.97203 1.01742 1.22357 0.77938 0.97452 1.06661 1.47790 1.07488 1.70774 1.05146 1.20310 0.88375 0.78087 0.84798 1.90748 1.13689 1.49592 1.86020 1.21780 0.90077 1.06434 0.82674 1.47939 1.28919 1.14761 1.21475 1.22198 0.99750 0.94635 0.90963 1.20705 1.05999 0.97709 0.98135 1.98315 1.90854 1.70503 1.42363 1.23903 1.00607 0.94221 0.94512 1.77672 1.02564 1.12710 1.13824 1.22257 0.95646 0.97270 0.82697 0.88307 1.23309 1.01036 0.97391 0.97967 1.21396 0.92488 0.83253 0.98549 1.44608 1.19144 1.02725 1.66401 1.19036 0.96945 0.89062 1.30985 0.90469 1.24754 0.98445 0.96099 1.00648 1.69949 1.29284 1.10544 1.46696 0.86176 0.81781 0.79956 0.78185 1.21559 1.21705 1.20773 1.21909 0.90296 0.94406 0.93637 0.93104 0.90790 0.93495 0.93854 0.90236 0.83795 0.92254 0.86488 0.85449 0.80059 0.79342 0.91773 0.91393 0.91970 0.94073 0.93686 0.95073 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.14 -1.84 5.31 -26.72 -0.14 -1.98 16 3 C 0.08 1.17 4.16 -4.04 -0.02 1.16 16 4 N -0.58 -9.09 2.53 -163.68 -0.41 -9.51 16 5 C 0.50 7.73 7.66 -10.98 -0.08 7.65 16 6 O -0.52 -10.08 15.09 5.55 0.08 -9.99 16 7 C 0.11 1.32 5.66 -5.20 -0.03 1.29 16 8 N -0.35 -4.48 3.41 -62.51 -0.21 -4.69 16 9 C 0.07 0.76 11.43 -17.16 -0.20 0.57 16 10 C -0.19 -2.09 6.65 -39.97 -0.27 -2.36 16 11 Cl -0.05 -0.47 29.30 -51.86 -1.52 -1.99 16 12 C 0.06 0.67 12.02 -17.34 -0.21 0.47 16 13 N -0.25 -3.69 11.63 30.64 0.36 -3.33 16 14 C 0.13 2.18 3.67 -65.78 -0.24 1.93 16 15 H 0.10 1.76 7.02 -51.93 -0.36 1.39 16 16 C -0.16 -2.74 5.99 -24.90 -0.15 -2.89 16 17 C 0.17 3.57 4.15 -3.07 -0.01 3.55 16 18 N -0.60 -13.60 1.91 -170.08 -0.33 -13.93 16 19 C -0.23 -5.84 9.90 -15.06 -0.15 -5.99 16 20 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 21 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 22 N -0.92 -24.10 10.31 55.49 0.57 -23.52 16 23 Si 0.91 20.59 29.55 -169.99 -5.02 15.56 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 C 0.12 2.44 6.54 -2.53 -0.02 2.42 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.47 6.32 -51.93 -0.33 0.14 16 32 H 0.08 1.21 4.72 -51.93 -0.25 0.97 16 33 H 0.14 2.78 4.31 -51.93 -0.22 2.56 16 34 H 0.06 0.76 6.71 -51.93 -0.35 0.41 16 35 H 0.12 1.18 7.29 -51.93 -0.38 0.80 16 36 H 0.13 1.06 6.29 -51.93 -0.33 0.74 16 37 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.19 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.06 1.03 6.77 -51.93 -0.35 0.68 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.37 4.44 -51.93 -0.23 1.14 16 42 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 43 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -30.09 366.07 -8.32 -38.41 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.11 Total: 3.39 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.24 Total: 4.08 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.02 Total: -54.98 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.52 Total: -1.99 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.09 -8.32 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753319118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.911 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds