Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53002 * 109.47003 * 2 1 4 4 N 1.46498 * 109.46697 * 181.69226 * 3 2 1 5 5 C 1.34783 * 119.99704 * 84.66092 * 4 3 2 6 6 O 1.21284 * 120.00066 * 175.12743 * 5 4 3 7 7 C 1.50700 * 120.00230 * 355.13694 * 5 4 3 8 8 N 1.46495 * 109.47214 * 179.97438 * 7 5 4 9 9 C 1.35051 * 126.03378 * 124.99963 * 8 7 5 10 10 C 1.35371 * 107.72452 * 179.72396 * 9 8 7 11 11 Cl 1.73600 * 126.04440 * 180.22353 * 10 9 8 12 12 C 1.39922 * 107.91273 * 0.23521 * 10 9 8 13 13 N 1.30853 * 108.21221 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00223 * 264.65760 * 4 3 2 15 15 H 1.09002 * 110.88368 * 180.30731 * 14 4 3 16 16 C 1.55154 * 111.00122 * 56.42923 * 14 4 3 17 17 C 1.54324 * 102.94138 * 277.42608 * 16 14 4 18 18 N 1.47019 * 107.27121 * 337.80735 * 17 16 14 19 19 C 1.36944 * 125.65188 * 178.89382 * 18 17 16 20 20 H 1.07995 * 120.00091 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99593 * 0.02771 * 19 18 17 22 22 N 1.31621 * 120.00133 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00060 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47119 * 89.99765 * 23 21 19 25 25 H 1.48498 * 109.47360 * 210.00273 * 23 21 19 26 26 H 1.48507 * 109.46962 * 330.00045 * 23 21 19 27 27 C 1.47425 * 108.70459 * 358.93906 * 18 17 16 28 28 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46904 * 300.00005 * 1 2 3 30 30 H 1.09000 * 109.46808 * 60.00065 * 1 2 3 31 31 H 1.08999 * 109.46904 * 239.99994 * 2 1 3 32 32 H 1.09000 * 109.46808 * 119.99935 * 2 1 3 33 33 H 1.08995 * 109.46770 * 61.69685 * 3 2 1 34 34 H 1.09002 * 109.47098 * 301.69335 * 3 2 1 35 35 H 1.09004 * 109.46916 * 59.99490 * 7 5 4 36 36 H 1.09000 * 109.46797 * 300.00213 * 7 5 4 37 37 H 1.07996 * 126.13379 * 359.97438 * 9 8 7 38 38 H 1.07996 * 125.89971 * 179.97438 * 12 10 9 39 39 H 1.08995 * 110.72369 * 35.78979 * 16 14 4 40 40 H 1.09000 * 110.71791 * 158.88697 * 16 14 4 41 41 H 1.08997 * 109.88336 * 97.22545 * 17 16 14 42 42 H 1.09000 * 109.88291 * 218.39510 * 17 16 14 43 43 H 0.96991 * 120.00325 * 179.97438 * 22 21 19 44 44 H 1.08991 * 110.37297 * 265.28929 * 27 18 17 45 45 H 1.09006 * 110.36895 * 142.96234 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5045 1.4426 -0.0408 5 6 4.1457 1.3455 -1.2223 6 8 5.3545 1.4344 -1.2654 7 6 3.3607 1.1268 -2.4900 8 7 4.2804 1.0573 -3.6281 9 6 4.3632 0.0486 -4.5222 10 6 5.3279 0.3687 -5.4165 11 17 5.8227 -0.5941 -6.7736 12 6 5.8558 1.6125 -5.0533 13 7 5.2312 2.0242 -3.9797 14 6 4.2720 1.5484 1.2026 15 1 5.3430 1.5395 1.0001 16 6 3.8839 0.4192 2.1933 17 6 2.6092 0.9718 2.8652 18 7 2.6324 2.4335 2.7094 19 6 1.6666 3.2986 3.1501 20 1 1.7768 4.3602 2.9857 21 6 0.5459 2.8108 3.8083 22 7 0.4114 1.5168 4.0082 23 14 -0.7711 3.9907 4.4101 24 1 -1.7874 4.1835 3.3446 25 1 -1.4232 3.4292 5.6204 26 1 -0.1498 5.2976 4.7439 27 6 3.8671 2.8138 1.9992 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.7018 1.9474 0.9048 34 1 1.6522 1.9650 -0.8744 35 1 2.6660 1.9543 -2.6345 36 1 2.8031 0.1932 -2.4154 37 1 3.7643 -0.8500 -4.5257 38 1 6.6434 2.1413 -5.5694 39 1 3.6679 -0.5057 1.6585 40 1 4.6736 0.2627 2.9282 41 1 1.7252 0.5610 2.3775 42 1 2.6057 0.7119 3.9237 43 1 -0.3714 1.1760 4.4684 44 1 4.6480 3.0796 2.7115 45 1 3.6736 3.6439 1.3198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753319118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = 64.047566 kcal Electronic energy + Delta-G solvation = -28506.200076 eV Core-core repulsion = 24587.350855 eV Total energy + Delta-G solvation = -3918.849221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.36490 -41.30178 -39.11750 -37.33345 -36.48165 -34.76289 -34.09204 -33.29780 -31.24877 -30.96662 -29.41113 -28.27019 -27.04686 -26.09834 -23.29759 -22.54911 -22.17299 -21.89064 -21.69268 -19.96174 -18.90953 -18.72204 -18.26545 -17.28244 -16.68512 -16.62800 -15.90389 -15.82632 -15.63317 -15.42238 -15.37057 -14.69929 -14.60786 -14.35065 -14.17610 -13.93305 -13.78218 -13.53332 -13.46625 -12.93529 -12.88187 -12.77273 -12.67867 -12.55952 -12.43616 -12.32701 -12.05946 -11.98679 -11.86146 -11.76453 -11.53520 -11.47299 -11.33082 -11.05104 -10.64189 -10.43896 -9.68237 -9.40671 -8.76098 -7.79564 -5.13914 0.70310 0.95883 1.47793 1.48974 1.51390 1.57890 1.64198 1.75061 2.01640 2.51963 3.26953 3.39851 3.59684 3.67884 3.81217 3.88177 3.96156 4.01756 4.03995 4.20663 4.26977 4.31046 4.45918 4.50419 4.63148 4.65717 4.70399 4.73023 4.87395 4.94959 4.97155 5.03442 5.14055 5.33168 5.37381 5.43542 5.47567 5.52918 5.69346 5.72865 5.80244 5.89611 6.24652 6.45541 6.55213 7.07880 7.16168 7.80087 8.44778 9.28912 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002700 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.777207 B =10367.000695 C =10683.546541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.082 3.918 4 N -0.580 5.580 5 C 0.499 3.501 6 O -0.565 6.565 7 C 0.119 3.881 8 N -0.359 5.359 9 C 0.082 3.918 10 C -0.200 4.200 11 Cl -0.038 7.038 12 C 0.053 3.947 13 N -0.300 5.300 14 C 0.137 3.863 15 H 0.099 0.901 16 C -0.143 4.143 17 C 0.180 3.820 18 N -0.612 5.612 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.046 4.046 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.280 1.280 27 C 0.124 3.876 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.167 0.833 37 H 0.221 0.779 38 H 0.206 0.794 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.054 0.946 42 H -0.001 1.001 43 H 0.247 0.753 44 H 0.030 0.970 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -6.810 -18.197 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.040 4.040 4 N -0.311 5.311 5 C 0.286 3.714 6 O -0.443 6.443 7 C -0.005 4.005 8 N -0.141 5.141 9 C -0.065 4.065 10 C -0.239 4.239 11 Cl -0.010 7.010 12 C -0.135 4.135 13 N -0.120 5.120 14 C 0.032 3.968 15 H 0.117 0.883 16 C -0.182 4.182 17 C 0.055 3.945 18 N -0.338 5.338 19 C -0.368 4.368 20 H 0.092 0.908 21 C -0.241 4.241 22 N -0.584 5.584 23 Si 0.794 3.206 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.205 1.205 27 C -0.002 4.002 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.152 0.848 36 H 0.184 0.816 37 H 0.237 0.763 38 H 0.223 0.777 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.559 -5.889 -17.203 18.528 hybrid contribution -0.519 0.072 0.408 0.664 sum 3.040 -5.817 -16.796 18.033 Atomic orbital electron populations 1.21603 0.94763 1.02013 1.01597 1.21985 0.96663 0.95934 1.02382 1.22264 0.77347 0.98638 1.05791 1.47795 1.07675 1.70784 1.04827 1.20986 0.88132 0.76688 0.85583 1.90736 1.15688 1.51304 1.86618 1.21943 0.89386 1.09101 0.80042 1.48045 1.29005 1.15010 1.22063 1.22835 0.99229 0.94829 0.89626 1.20855 1.06428 0.97707 0.98898 1.98318 1.90819 1.70057 1.41798 1.24291 1.00480 0.94795 0.93886 1.77607 1.04378 1.14657 1.15394 1.21989 0.95814 0.95591 0.83403 0.88349 1.23164 0.99121 0.97916 0.97974 1.21163 0.94290 0.82805 0.96208 1.44710 1.19535 1.03104 1.66486 1.19234 0.97632 0.89382 1.30582 0.90846 1.25351 1.00119 0.97326 1.01302 1.70117 1.29329 1.11650 1.47285 0.85303 0.79694 0.78309 0.77304 1.20985 1.22522 1.20530 1.21961 0.89119 0.95548 0.93581 0.91729 0.95090 0.91094 0.90088 0.92559 0.88062 0.89527 0.84821 0.81560 0.76280 0.77744 0.89946 0.90655 0.92763 0.98276 0.94395 0.95254 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.91 71.99 0.71 -2.70 16 2 C -0.13 -3.15 5.31 30.60 0.16 -2.99 16 3 C 0.08 2.31 4.16 86.38 0.36 2.67 16 4 N -0.58 -17.23 2.53 -790.13 -2.00 -19.22 16 5 C 0.50 14.35 7.66 87.66 0.67 15.02 16 6 O -0.56 -21.07 15.09 -3.04 -0.05 -21.11 16 7 C 0.12 2.29 5.66 85.63 0.48 2.77 16 8 N -0.36 -8.18 3.41 -351.68 -1.20 -9.38 16 9 C 0.08 1.44 11.43 83.54 0.95 2.40 16 10 C -0.20 -4.00 6.65 22.02 0.15 -3.85 16 11 Cl -0.04 -0.65 29.30 -2.72 -0.08 -0.73 16 12 C 0.05 1.21 12.02 85.25 1.02 2.24 16 13 N -0.30 -8.54 11.63 -56.98 -0.66 -9.20 16 14 C 0.14 4.68 3.67 46.38 0.17 4.85 16 15 H 0.10 3.44 7.02 -2.39 -0.02 3.42 16 16 C -0.14 -4.90 5.99 31.78 0.19 -4.71 16 17 C 0.18 7.85 4.15 86.73 0.36 8.21 16 18 N -0.61 -28.30 1.91 -692.00 -1.32 -29.62 16 19 C -0.24 -12.31 9.90 84.03 0.83 -11.48 16 20 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 21 C -0.05 -2.42 5.49 84.86 0.47 -1.95 16 22 N -0.94 -50.59 10.31 21.65 0.22 -50.37 16 23 Si 0.96 42.93 29.55 68.60 2.03 44.96 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.12 4.94 6.54 86.86 0.57 5.50 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.34 6.32 -2.39 -0.02 1.33 16 32 H 0.06 1.63 4.72 -2.39 -0.01 1.62 16 33 H 0.10 3.90 4.31 -2.39 -0.01 3.89 16 34 H 0.09 1.95 6.71 -2.39 -0.02 1.93 16 35 H 0.13 2.16 7.29 -2.38 -0.02 2.14 16 36 H 0.17 1.82 6.29 -2.39 -0.02 1.80 16 37 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.21 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.08 2.54 6.77 -2.39 -0.02 2.53 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.05 2.46 4.44 -2.39 -0.01 2.45 16 42 H 0.00 -0.05 7.51 -2.39 -0.02 -0.07 16 43 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -68.25 366.07 5.07 -63.18 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.02 Total: 15.52 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 7.10 Total: 15.98 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -4.96 Total: -117.79 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -68.25 5.07 -63.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753319118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.229 kcal (2) G-P(sol) polarization free energy of solvation -68.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds