Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47037 * 2 1 4 4 N 1.46501 * 109.47068 * 180.02562 * 3 2 1 5 5 C 1.34782 * 120.00250 * 90.00164 * 4 3 2 6 6 O 1.21273 * 120.00085 * 180.02562 * 5 4 3 7 7 C 1.50692 * 119.99773 * 359.97438 * 5 4 3 8 8 N 1.46503 * 109.47283 * 180.02562 * 7 5 4 9 9 C 1.35043 * 126.04105 * 125.00149 * 8 7 5 10 10 C 1.35374 * 107.72673 * 180.26449 * 9 8 7 11 11 Cl 1.73595 * 126.04392 * 179.77261 * 10 9 8 12 12 C 1.39935 * 107.90761 * 359.64082 * 10 9 8 13 13 N 1.30847 * 108.21133 * 0.36277 * 12 10 9 14 14 C 1.46500 * 119.99541 * 269.99751 * 4 3 2 15 15 H 1.08996 * 110.64568 * 1.69010 * 14 4 3 16 16 C 1.55156 * 110.71826 * 125.02698 * 14 4 3 17 17 C 1.54905 * 101.58323 * 153.86416 * 16 14 4 18 18 N 1.47428 * 104.83408 * 322.98760 * 17 16 14 19 19 C 1.36930 * 125.65009 * 204.09705 * 18 17 16 20 20 H 1.08002 * 120.00291 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00266 * 0.03850 * 19 18 17 22 22 N 1.31622 * 119.99721 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00227 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47227 * 89.99758 * 23 21 19 25 25 H 1.48500 * 109.47180 * 210.00030 * 23 21 19 26 26 H 1.48507 * 109.47281 * 330.00163 * 23 21 19 27 27 C 1.47023 * 108.69857 * 24.12953 * 18 17 16 28 28 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47097 * 299.99850 * 1 2 3 30 30 H 1.09003 * 109.47169 * 60.00025 * 1 2 3 31 31 H 1.09003 * 109.46705 * 239.99812 * 2 1 3 32 32 H 1.09003 * 109.47169 * 119.99975 * 2 1 3 33 33 H 1.09003 * 109.47708 * 59.99792 * 3 2 1 34 34 H 1.09003 * 109.47120 * 300.00004 * 3 2 1 35 35 H 1.09001 * 109.47565 * 60.00651 * 7 5 4 36 36 H 1.09001 * 109.47483 * 300.00287 * 7 5 4 37 37 H 1.08002 * 126.13218 * 359.97438 * 9 8 7 38 38 H 1.07997 * 125.88690 * 180.15028 * 12 10 9 39 39 H 1.09003 * 111.00379 * 271.94090 * 16 14 4 40 40 H 1.09001 * 111.00742 * 35.78940 * 16 14 4 41 41 H 1.09005 * 110.36465 * 204.15160 * 17 16 14 42 42 H 1.08996 * 110.37110 * 81.82577 * 17 16 14 43 43 H 0.96996 * 119.99727 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.88108 * 239.52136 * 27 18 17 45 45 H 1.08994 * 109.88206 * 118.36003 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.4426 -1.1681 6 8 5.3912 1.4422 -1.1686 7 6 3.4244 1.4423 -2.4728 8 7 4.3760 1.4420 -3.5868 9 6 4.4158 0.5473 -4.5975 10 6 5.4397 0.8921 -5.4131 11 17 5.9198 0.0584 -6.8582 12 6 6.0407 2.0411 -4.8871 13 7 5.4058 2.3694 -3.7911 14 6 4.2379 1.4423 1.2679 15 1 3.5474 1.4121 2.1107 16 6 5.2337 0.2539 1.3263 17 6 6.3053 0.7939 2.3059 18 7 6.4179 2.2292 1.9884 19 6 7.5098 3.0179 2.2350 20 1 7.4932 4.0632 1.9640 21 6 8.6382 2.4738 2.8332 22 7 8.6583 1.2000 3.1637 23 14 10.1274 3.5499 3.1702 24 1 10.0064 4.1533 4.5216 25 1 11.3598 2.7239 3.1054 26 1 10.1999 4.6280 2.1514 27 6 5.1633 2.6736 1.3639 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 2.7975 2.3321 -2.5305 36 1 2.7981 0.5521 -2.5303 37 1 3.7529 -0.2952 -4.7287 38 1 6.8853 2.5642 -5.3106 39 1 4.7533 -0.6391 1.7262 40 1 5.6653 0.0572 0.3449 41 1 7.2588 0.2926 2.1391 42 1 5.9795 0.6580 3.3371 43 1 9.4469 0.8197 3.5813 44 1 5.3640 3.0652 0.3667 45 1 4.6950 3.4421 1.9788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753319119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = 82.978807 kcal Electronic energy + Delta-G solvation = -28146.879872 eV Core-core repulsion = 24228.851571 eV Total energy + Delta-G solvation = -3918.028301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43064 -40.05092 -36.88619 -36.47670 -36.06946 -33.45690 -33.04089 -31.77517 -30.17025 -29.18583 -28.03998 -27.03306 -25.87441 -24.33369 -22.31904 -21.71825 -21.31174 -20.70246 -20.07969 -18.72517 -17.62112 -17.21050 -16.81941 -15.81805 -15.73126 -15.06561 -14.78229 -14.58147 -14.52099 -14.27241 -14.01244 -13.79074 -13.50556 -13.37795 -13.09588 -12.71187 -12.55588 -12.43170 -12.08142 -11.82764 -11.71717 -11.57765 -11.46745 -11.40821 -11.01717 -10.93869 -10.81804 -10.73008 -10.55508 -10.48102 -10.02697 -9.85134 -9.71075 -9.47005 -9.12635 -8.54826 -8.50471 -8.38879 -6.69420 -5.53436 -2.93480 1.57074 1.81561 2.56615 2.63285 2.69070 3.02128 3.47916 3.52769 3.55615 4.18183 4.35836 4.49439 4.56227 4.60705 4.72108 4.76896 4.87642 4.98490 5.11875 5.28998 5.34498 5.40513 5.41635 5.49849 5.56937 5.62502 5.70619 5.75876 5.79968 5.90564 5.98104 6.23954 6.28392 6.53612 6.55221 6.64840 6.66118 6.78249 7.18120 7.46556 7.48658 7.62566 7.74446 7.96521 8.32716 8.48511 9.33904 9.95133 10.59689 11.50815 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.003770 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.674314 B = 7425.572363 C =10009.018217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.105 3.895 4 N -0.604 5.604 5 C 0.491 3.509 6 O -0.472 6.472 7 C 0.116 3.884 8 N -0.353 5.353 9 C 0.069 3.931 10 C -0.183 4.183 11 Cl -0.048 7.048 12 C 0.058 3.942 13 N -0.242 5.242 14 C 0.137 3.863 15 H 0.089 0.911 16 C -0.155 4.155 17 C 0.158 3.842 18 N -0.595 5.595 19 C -0.213 4.213 20 H 0.075 0.925 21 C -0.013 4.013 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.133 3.867 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.009 0.991 43 H 0.250 0.750 44 H 0.036 0.964 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.310 -4.120 -14.595 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.019 4.019 4 N -0.339 5.339 5 C 0.274 3.726 6 O -0.342 6.342 7 C -0.009 4.009 8 N -0.135 5.135 9 C -0.078 4.078 10 C -0.222 4.222 11 Cl -0.020 7.020 12 C -0.130 4.130 13 N -0.062 5.062 14 C 0.035 3.965 15 H 0.107 0.893 16 C -0.194 4.194 17 C 0.033 3.967 18 N -0.321 5.321 19 C -0.342 4.342 20 H 0.093 0.907 21 C -0.208 4.208 22 N -0.574 5.574 23 Si 0.744 3.256 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.006 3.994 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.198 0.802 38 H 0.207 0.793 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -18.541 -3.352 -13.528 23.196 hybrid contribution 0.624 -0.212 -0.508 0.832 sum -17.917 -3.564 -14.036 23.038 Atomic orbital electron populations 1.21716 0.95049 1.02046 1.02000 1.22017 0.96052 0.97210 1.03091 1.21729 0.79906 0.96857 1.03415 1.47971 1.05937 1.74060 1.05930 1.20270 0.88705 0.78939 0.84645 1.90923 1.12591 1.44696 1.86006 1.21699 0.89511 1.05821 0.83855 1.47884 1.25452 1.21492 1.18652 1.22139 0.99882 0.96268 0.89506 1.20716 1.03514 1.01495 0.96479 1.98315 1.91364 1.77410 1.34922 1.23941 1.00531 0.95582 0.92966 1.77740 0.99581 1.12769 1.16077 1.22228 0.93244 0.98285 0.82784 0.89253 1.23427 0.97753 0.95308 1.02943 1.21833 0.97822 0.84742 0.92282 1.44274 1.11077 1.06522 1.70231 1.19053 0.90916 0.91929 1.32279 0.90715 1.24749 0.98226 0.96357 1.01458 1.69794 1.28720 1.10977 1.47870 0.86077 0.82473 0.79149 0.77869 1.21773 1.21701 1.20737 1.21478 0.87721 0.93292 0.96894 0.92430 0.92370 0.92639 0.92029 0.90957 0.89764 0.90793 0.86856 0.85999 0.80172 0.79271 0.93010 0.90141 0.87596 0.97302 0.93913 0.94563 0.96660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.14 -1.02 6.26 -26.73 -0.17 -1.19 16 3 C 0.10 0.86 5.19 -4.05 -0.02 0.84 16 4 N -0.60 -8.11 2.54 -164.03 -0.42 -8.53 16 5 C 0.49 7.45 6.81 -10.99 -0.07 7.37 16 6 O -0.47 -10.02 12.05 5.56 0.07 -9.95 16 7 C 0.12 1.19 5.54 -5.20 -0.03 1.16 16 8 N -0.35 -4.56 3.40 -62.51 -0.21 -4.78 16 9 C 0.07 0.75 11.43 -17.16 -0.20 0.55 16 10 C -0.18 -2.21 6.65 -39.97 -0.27 -2.47 16 11 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.03 16 12 C 0.06 0.79 12.02 -17.34 -0.21 0.58 16 13 N -0.24 -3.90 11.64 30.64 0.36 -3.54 16 14 C 0.14 2.40 3.44 -66.10 -0.23 2.17 16 15 H 0.09 1.38 7.88 -51.93 -0.41 0.97 16 16 C -0.15 -3.15 6.39 -24.58 -0.16 -3.31 16 17 C 0.16 4.07 5.89 -2.53 -0.01 4.06 16 18 N -0.60 -16.30 3.39 -170.07 -0.58 -16.87 16 19 C -0.21 -6.36 10.27 -15.06 -0.15 -6.51 16 20 H 0.07 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 22 N -0.92 -28.29 10.09 55.49 0.56 -27.73 16 23 Si 0.91 23.34 29.55 -169.99 -5.02 18.31 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.13 2.99 6.49 -3.06 -0.02 2.97 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.41 7.22 -51.93 -0.37 0.04 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 34 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 35 H 0.11 0.89 7.40 -51.93 -0.38 0.51 16 36 H 0.12 0.75 7.11 -51.93 -0.37 0.38 16 37 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.82 5.81 -51.93 -0.30 1.52 16 41 H 0.11 3.12 5.87 -51.93 -0.31 2.81 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.04 0.89 6.28 -51.93 -0.33 0.56 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -37.38 376.32 -8.93 -46.31 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.57 Total: -2.18 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.26 Total: 5.32 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.29 Total: -61.45 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.38 -8.93 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753319119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.284 kcal (2) G-P(sol) polarization free energy of solvation -37.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds