Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47190 * 2 1 4 4 C 1.50705 * 109.46748 * 120.00501 * 2 1 3 5 5 O 1.21277 * 119.99984 * 120.00047 * 4 2 1 6 6 N 1.34778 * 119.99625 * 300.27038 * 4 2 1 7 7 C 1.46493 * 120.00014 * 359.72713 * 6 4 2 8 8 C 1.46501 * 119.99364 * 179.72747 * 6 4 2 9 9 C 1.50697 * 109.46923 * 90.00272 * 8 6 4 10 10 H 1.07994 * 120.00410 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99931 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99804 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00235 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46836 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46815 * 120.00459 * 13 11 9 16 16 H 1.48499 * 109.47410 * 240.00345 * 13 11 9 17 17 N 1.46905 * 109.46707 * 240.00184 * 2 1 3 18 18 C 1.48525 * 111.00277 * 54.54186 * 17 2 1 19 19 C 1.54943 * 103.22873 * 159.71610 * 18 17 2 20 20 C 1.54595 * 102.92025 * 322.58971 * 19 18 17 21 21 H 1.09008 * 110.39010 * 262.99404 * 20 19 18 22 22 N 1.46494 * 110.31133 * 140.87202 * 20 19 18 23 23 C 1.35047 * 126.03516 * 328.99929 * 22 20 19 24 24 C 1.35374 * 107.72687 * 179.83707 * 23 22 20 25 25 Cl 1.73601 * 126.04556 * 180.15904 * 24 23 22 26 26 C 1.39931 * 107.90854 * 0.42245 * 24 23 22 27 27 N 1.30847 * 108.20942 * 359.73848 * 26 24 23 28 28 C 1.47901 * 110.99542 * 171.93777 * 17 2 1 29 29 H 1.08994 * 109.47313 * 187.02513 * 1 2 3 30 30 H 1.08998 * 109.47177 * 307.03022 * 1 2 3 31 31 H 1.09001 * 109.46623 * 67.02416 * 1 2 3 32 32 H 1.09007 * 109.47261 * 90.00110 * 7 6 4 33 33 H 1.09006 * 109.46868 * 209.99743 * 7 6 4 34 34 H 1.08999 * 109.47819 * 329.99794 * 7 6 4 35 35 H 1.09007 * 109.46576 * 210.00122 * 8 6 4 36 36 H 1.08999 * 109.47242 * 329.99964 * 8 6 4 37 37 H 0.96996 * 120.00006 * 179.97438 * 12 11 9 38 38 H 1.08997 * 110.67078 * 278.15176 * 18 17 2 39 39 H 1.09005 * 110.66770 * 41.28324 * 18 17 2 40 40 H 1.08996 * 110.72334 * 204.23066 * 19 18 17 41 41 H 1.08999 * 110.87389 * 81.01360 * 19 18 17 42 42 H 1.08002 * 126.13575 * 359.97438 * 23 22 20 43 43 H 1.08000 * 125.89090 * 179.75924 * 26 24 23 44 44 H 1.09004 * 109.92311 * 333.51107 * 28 17 2 45 45 H 1.09007 * 109.91770 * 94.80057 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2305 5 8 2.7295 -1.6966 1.1191 6 7 1.7021 -0.2533 2.4546 7 6 0.8599 0.9378 2.5889 8 6 2.1854 -0.9476 3.6506 9 6 3.5116 -0.3658 4.0676 10 1 3.9507 0.4400 3.4984 11 6 4.1644 -0.8625 5.1759 12 7 3.6299 -1.8443 5.8688 13 14 5.8086 -0.1420 5.6924 14 1 6.1901 0.9436 4.7536 15 1 5.6976 0.4090 7.0669 16 1 6.8448 -1.2054 5.6675 17 7 2.0196 -0.6925 -1.1995 18 6 1.4386 -0.0993 -2.4310 19 6 2.4190 -0.5554 -3.5408 20 6 3.7952 -0.4741 -2.8411 21 1 4.2881 0.4681 -3.0809 22 7 4.6370 -1.6039 -3.2422 23 6 4.2035 -2.8384 -3.5764 24 6 5.2884 -3.5864 -3.8863 25 17 5.2741 -5.2490 -4.3859 26 6 6.4239 -2.7843 -3.7269 27 7 6.0343 -1.5963 -3.3409 28 6 3.4852 -0.5468 -1.3345 29 1 -0.3633 -1.0199 0.1257 30 1 -0.3633 0.6189 0.8204 31 1 -0.3632 0.4012 -0.9462 32 1 -0.1884 0.6403 2.6174 33 1 1.1144 1.4605 3.5111 34 1 1.0271 1.5989 1.7386 35 1 1.4643 -0.8241 4.4587 36 1 2.3069 -2.0083 3.4309 37 1 4.0893 -2.1940 6.6482 38 1 0.4395 -0.4947 -2.6141 39 1 1.4162 0.9882 -2.3606 40 1 2.3791 0.1227 -4.3932 41 1 2.2046 -1.5776 -3.8524 42 1 3.1755 -3.1690 -3.5954 43 1 7.4454 -3.0926 -3.8939 44 1 3.8142 0.3689 -0.8430 45 1 3.9862 -1.4086 -0.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289977908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = 65.961248 kcal Electronic energy + Delta-G solvation = -27896.419429 eV Core-core repulsion = 23977.653192 eV Total energy + Delta-G solvation = -3918.766238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53779 -39.91801 -38.18542 -36.45535 -34.87192 -34.34396 -32.65295 -31.35927 -30.20282 -29.52738 -28.10433 -27.24797 -26.11918 -24.23546 -22.88862 -22.56487 -21.47953 -20.75060 -20.08799 -18.51672 -17.83278 -16.72935 -16.41418 -16.35849 -15.58963 -15.20542 -14.91792 -14.78015 -14.60162 -14.43946 -13.92912 -13.62973 -13.43298 -13.18153 -12.94088 -12.80638 -12.49432 -12.34252 -12.23621 -12.16668 -11.92820 -11.62617 -11.57094 -11.48163 -11.38148 -11.23574 -11.19550 -11.08509 -10.85425 -10.59871 -10.58850 -10.16937 -9.63713 -9.62377 -8.95930 -8.51994 -8.45343 -8.37765 -7.65517 -6.05980 -4.10904 1.62687 1.84603 2.49878 2.66170 3.28377 3.35546 3.37991 3.41622 3.53687 3.94206 4.19242 4.23090 4.43580 4.56336 4.64027 4.70198 4.83880 4.93886 4.98311 5.11625 5.13547 5.28621 5.34617 5.36619 5.37895 5.48502 5.53036 5.59017 5.61907 5.66125 5.71055 5.85947 6.02321 6.06682 6.22821 6.23775 6.71514 6.74207 6.74523 7.07268 7.43238 7.43926 7.52466 7.90481 8.21452 8.39624 8.88813 9.09469 9.54503 11.02070 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.003270 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.401364 B = 8560.948759 C =10231.425348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 H 0.063 0.937 4 C 0.510 3.490 5 O -0.522 6.522 6 N -0.602 5.602 7 C 0.082 3.918 8 C 0.247 3.753 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.490 5.490 18 C 0.036 3.964 19 C -0.133 4.133 20 C 0.152 3.848 21 H 0.111 0.889 22 N -0.351 5.351 23 C 0.087 3.913 24 C -0.192 4.192 25 Cl -0.047 7.047 26 C 0.063 3.937 27 N -0.283 5.283 28 C 0.031 3.969 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.183 0.817 43 H 0.190 0.810 44 H 0.058 0.942 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.783 4.330 -21.459 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.057 4.057 3 H 0.081 0.919 4 C 0.294 3.706 5 O -0.398 6.398 6 N -0.335 5.335 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.215 5.215 18 C -0.092 4.092 19 C -0.172 4.172 20 C 0.050 3.950 21 H 0.129 0.871 22 N -0.132 5.132 23 C -0.061 4.061 24 C -0.230 4.230 25 Cl -0.019 7.019 26 C -0.124 4.124 27 N -0.103 5.103 28 C -0.098 4.098 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.200 0.800 43 H 0.207 0.793 44 H 0.076 0.924 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.236 4.307 -20.924 21.995 hybrid contribution 0.915 0.323 0.251 1.003 sum -4.321 4.630 -20.673 21.621 Atomic orbital electron populations 1.22062 0.92302 1.03821 1.02784 1.21857 0.97151 0.95983 0.90685 0.91911 1.19992 0.81339 0.85304 0.83923 1.90673 1.37138 1.26064 1.85897 1.48104 1.49963 1.28236 1.07237 1.21782 0.93908 0.88180 1.02352 1.19277 0.94203 0.93657 0.80062 1.21449 1.05000 1.18948 1.11142 0.92583 1.24931 0.97892 0.94937 0.96293 1.69938 1.38969 1.25890 1.18450 0.86463 0.83813 0.79069 0.78197 1.19877 1.20918 1.20805 1.64616 1.04458 1.51915 1.00476 1.23291 0.99093 0.97847 0.89013 1.22979 0.91997 1.03974 0.98233 1.22319 0.89892 0.87239 0.95562 0.87077 1.48526 1.04719 1.09086 1.50875 1.22142 0.99973 0.85474 0.98532 1.20712 0.94070 0.89036 1.19229 1.98318 1.98749 1.14590 1.90282 1.23847 0.99555 0.90074 0.98889 1.77488 0.89153 1.21011 1.22670 1.23358 0.89611 1.03885 0.92914 0.91269 0.90393 0.91900 0.93415 0.90851 0.92612 0.95019 0.93832 0.92740 0.88807 0.93013 0.89412 0.89238 0.80043 0.79340 0.92364 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.65 37.16 0.32 -1.35 16 2 C 0.06 0.78 1.44 -68.86 -0.10 0.68 16 3 H 0.06 0.81 7.13 -51.93 -0.37 0.44 16 4 C 0.51 10.36 6.86 -10.98 -0.08 10.28 16 5 O -0.52 -13.07 14.52 5.56 0.08 -12.99 16 6 N -0.60 -12.51 2.86 -182.95 -0.52 -13.03 16 7 C 0.08 1.23 8.79 59.84 0.53 1.76 16 8 C 0.25 6.45 5.16 -5.19 -0.03 6.43 16 9 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 13 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 N -0.49 -6.52 4.82 -223.88 -1.08 -7.59 16 18 C 0.04 0.31 5.17 -1.90 -0.01 0.30 16 19 C -0.13 -1.04 6.61 -24.87 -0.16 -1.21 16 20 C 0.15 1.66 4.11 -66.58 -0.27 1.38 16 21 H 0.11 1.09 8.14 -51.92 -0.42 0.66 16 22 N -0.35 -4.46 3.48 -53.51 -0.19 -4.65 16 23 C 0.09 1.04 10.42 -17.16 -0.18 0.86 16 24 C -0.19 -2.35 6.65 -39.97 -0.27 -2.61 16 25 Cl -0.05 -0.53 29.30 -51.86 -1.52 -2.05 16 26 C 0.06 0.78 12.02 -17.34 -0.21 0.57 16 27 N -0.28 -3.99 12.57 30.64 0.39 -3.60 16 28 C 0.03 0.44 5.48 -2.76 -0.02 0.43 16 29 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.08 0.78 4.74 -51.93 -0.25 0.53 16 31 H 0.06 0.52 6.45 -51.93 -0.33 0.18 16 32 H 0.05 0.61 7.10 -51.92 -0.37 0.24 16 33 H 0.07 1.15 8.07 -51.93 -0.42 0.74 16 34 H 0.06 0.68 5.94 -51.93 -0.31 0.37 16 35 H 0.03 0.83 8.07 -51.92 -0.42 0.42 16 36 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.09 0.70 7.50 -51.93 -0.39 0.31 16 39 H 0.05 0.38 8.02 -51.93 -0.42 -0.03 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.69 5.94 -51.93 -0.31 0.39 16 42 H 0.18 1.78 6.87 -52.49 -0.36 1.42 16 43 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.06 0.85 7.60 -51.93 -0.39 0.46 16 45 H 0.11 1.99 7.08 -51.93 -0.37 1.63 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -34.98 374.43 -8.70 -43.67 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.32 Total: -0.39 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.89 Total: 3.91 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.67 Total: -54.83 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.52 Total: -2.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.98 -8.70 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289977908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.636 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds