Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47190 * 2 1 4 4 C 1.50705 * 109.46748 * 120.00501 * 2 1 3 5 5 O 1.21277 * 119.99984 * 120.00047 * 4 2 1 6 6 N 1.34778 * 119.99625 * 300.27038 * 4 2 1 7 7 C 1.46493 * 120.00014 * 359.72713 * 6 4 2 8 8 C 1.46501 * 119.99364 * 179.72747 * 6 4 2 9 9 C 1.50697 * 109.46923 * 90.00272 * 8 6 4 10 10 H 1.07994 * 120.00410 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99931 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99804 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00235 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46836 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46815 * 120.00459 * 13 11 9 16 16 H 1.48499 * 109.47410 * 240.00345 * 13 11 9 17 17 N 1.46905 * 109.46707 * 240.00184 * 2 1 3 18 18 C 1.48525 * 111.00277 * 54.54186 * 17 2 1 19 19 C 1.54943 * 103.22873 * 159.71610 * 18 17 2 20 20 C 1.54595 * 102.92025 * 322.58971 * 19 18 17 21 21 H 1.09008 * 110.39010 * 262.99404 * 20 19 18 22 22 N 1.46494 * 110.31133 * 140.87202 * 20 19 18 23 23 C 1.35047 * 126.03516 * 328.99929 * 22 20 19 24 24 C 1.35374 * 107.72687 * 179.83707 * 23 22 20 25 25 Cl 1.73601 * 126.04556 * 180.15904 * 24 23 22 26 26 C 1.39931 * 107.90854 * 0.42245 * 24 23 22 27 27 N 1.30847 * 108.20942 * 359.73848 * 26 24 23 28 28 C 1.47901 * 110.99542 * 171.93777 * 17 2 1 29 29 H 1.08994 * 109.47313 * 187.02513 * 1 2 3 30 30 H 1.08998 * 109.47177 * 307.03022 * 1 2 3 31 31 H 1.09001 * 109.46623 * 67.02416 * 1 2 3 32 32 H 1.09007 * 109.47261 * 90.00110 * 7 6 4 33 33 H 1.09006 * 109.46868 * 209.99743 * 7 6 4 34 34 H 1.08999 * 109.47819 * 329.99794 * 7 6 4 35 35 H 1.09007 * 109.46576 * 210.00122 * 8 6 4 36 36 H 1.08999 * 109.47242 * 329.99964 * 8 6 4 37 37 H 0.96996 * 120.00006 * 179.97438 * 12 11 9 38 38 H 1.08997 * 110.67078 * 278.15176 * 18 17 2 39 39 H 1.09005 * 110.66770 * 41.28324 * 18 17 2 40 40 H 1.08996 * 110.72334 * 204.23066 * 19 18 17 41 41 H 1.08999 * 110.87389 * 81.01360 * 19 18 17 42 42 H 1.08002 * 126.13575 * 359.97438 * 23 22 20 43 43 H 1.08000 * 125.89090 * 179.75924 * 26 24 23 44 44 H 1.09004 * 109.92311 * 333.51107 * 28 17 2 45 45 H 1.09007 * 109.91770 * 94.80057 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2305 5 8 2.7295 -1.6966 1.1191 6 7 1.7021 -0.2533 2.4546 7 6 0.8599 0.9378 2.5889 8 6 2.1854 -0.9476 3.6506 9 6 3.5116 -0.3658 4.0676 10 1 3.9507 0.4400 3.4984 11 6 4.1644 -0.8625 5.1759 12 7 3.6299 -1.8443 5.8688 13 14 5.8086 -0.1420 5.6924 14 1 6.1901 0.9436 4.7536 15 1 5.6976 0.4090 7.0669 16 1 6.8448 -1.2054 5.6675 17 7 2.0196 -0.6925 -1.1995 18 6 1.4386 -0.0993 -2.4310 19 6 2.4190 -0.5554 -3.5408 20 6 3.7952 -0.4741 -2.8411 21 1 4.2881 0.4681 -3.0809 22 7 4.6370 -1.6039 -3.2422 23 6 4.2035 -2.8384 -3.5764 24 6 5.2884 -3.5864 -3.8863 25 17 5.2741 -5.2490 -4.3859 26 6 6.4239 -2.7843 -3.7269 27 7 6.0343 -1.5963 -3.3409 28 6 3.4852 -0.5468 -1.3345 29 1 -0.3633 -1.0199 0.1257 30 1 -0.3633 0.6189 0.8204 31 1 -0.3632 0.4012 -0.9462 32 1 -0.1884 0.6403 2.6174 33 1 1.1144 1.4605 3.5111 34 1 1.0271 1.5989 1.7386 35 1 1.4643 -0.8241 4.4587 36 1 2.3069 -2.0083 3.4309 37 1 4.0893 -2.1940 6.6482 38 1 0.4395 -0.4947 -2.6141 39 1 1.4162 0.9882 -2.3606 40 1 2.3791 0.1227 -4.3932 41 1 2.2046 -1.5776 -3.8524 42 1 3.1755 -3.1690 -3.5954 43 1 7.4454 -3.0926 -3.8939 44 1 3.8142 0.3689 -0.8430 45 1 3.9862 -1.4086 -0.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289977908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = 40.774510 kcal Electronic energy + Delta-G solvation = -27897.511608 eV Core-core repulsion = 23977.653192 eV Total energy + Delta-G solvation = -3919.858417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.47051 -41.19974 -39.40590 -37.37238 -36.60640 -35.48920 -34.62996 -32.42293 -31.13058 -30.47837 -29.70214 -28.42188 -27.55736 -25.76937 -24.20322 -23.65702 -22.49238 -21.78071 -20.95545 -19.99234 -18.78158 -18.72119 -17.90047 -17.55007 -16.82454 -16.60434 -16.30754 -15.89484 -15.72635 -15.62871 -15.24270 -14.86646 -14.42297 -14.33392 -14.19167 -13.97990 -13.74509 -13.64251 -13.51365 -13.24878 -13.17896 -13.01827 -12.87535 -12.62322 -12.49906 -12.43024 -12.40403 -12.34647 -12.31376 -12.12764 -11.87544 -11.71020 -11.51859 -10.69010 -10.60226 -10.47787 -9.47611 -9.42390 -9.39699 -8.26416 -6.41489 0.67688 0.95461 1.31223 1.34360 1.45282 1.55271 1.75187 1.86263 2.21041 2.37377 2.89983 3.02854 3.30066 3.36374 3.67353 3.71353 3.81993 3.88439 4.03709 4.04565 4.16383 4.21176 4.40289 4.40591 4.56148 4.58171 4.64809 4.74982 4.80523 4.84231 4.86236 4.91563 4.95563 4.98745 5.02278 5.20017 5.29308 5.33026 5.52694 5.71993 5.81338 5.84829 5.93271 6.02785 6.48852 6.66979 6.80443 7.25305 7.51887 8.80592 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.003270 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.401364 B = 8560.948759 C =10231.425348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.084 0.916 4 C 0.496 3.504 5 O -0.584 6.584 6 N -0.611 5.611 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.542 4.542 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.265 1.265 16 H -0.283 1.283 17 N -0.511 5.511 18 C 0.038 3.962 19 C -0.121 4.121 20 C 0.153 3.847 21 H 0.124 0.876 22 N -0.356 5.356 23 C 0.085 3.915 24 C -0.205 4.205 25 Cl -0.040 7.040 26 C 0.060 3.940 27 N -0.318 5.318 28 C 0.038 3.962 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.024 0.976 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.201 0.799 43 H 0.211 0.789 44 H 0.046 0.954 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.115 6.789 -23.570 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.284 3.716 5 O -0.464 6.464 6 N -0.343 5.343 7 C -0.066 4.066 8 C 0.141 3.859 9 C -0.581 4.581 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.193 1.193 15 H -0.190 1.190 16 H -0.209 1.209 17 N -0.237 5.237 18 C -0.089 4.089 19 C -0.160 4.160 20 C 0.051 3.949 21 H 0.142 0.858 22 N -0.137 5.137 23 C -0.064 4.064 24 C -0.243 4.243 25 Cl -0.012 7.012 26 C -0.127 4.127 27 N -0.138 5.138 28 C -0.091 4.091 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.042 0.958 36 H 0.011 0.989 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.218 0.782 43 H 0.228 0.772 44 H 0.065 0.935 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.614 6.816 -23.054 24.934 hybrid contribution 1.301 -0.516 0.922 1.676 sum -5.314 6.300 -22.132 23.616 Atomic orbital electron populations 1.22085 0.89249 1.03321 1.05577 1.21784 0.99173 0.95575 0.87786 0.89837 1.21284 0.80099 0.84819 0.85436 1.90643 1.39787 1.29005 1.86920 1.48130 1.50573 1.29588 1.06026 1.22114 0.94403 0.86460 1.03612 1.18690 0.93668 0.91480 0.82073 1.21713 1.06115 1.18921 1.11309 0.93171 1.25844 1.01691 0.95237 0.96313 1.70052 1.40646 1.27031 1.18962 0.85406 0.78815 0.78260 0.78565 1.19278 1.18996 1.20931 1.64501 1.03789 1.53381 1.02004 1.23482 0.99716 0.99298 0.86384 1.23028 0.89208 1.05039 0.98684 1.22465 0.91579 0.87335 0.93486 0.85826 1.48695 1.04444 1.09784 1.50796 1.22513 1.00847 0.85287 0.97724 1.20881 0.94267 0.89516 1.19683 1.98315 1.98743 1.13964 1.90220 1.24273 1.00723 0.89666 0.97993 1.77420 0.90266 1.22162 1.23978 1.23086 0.90365 1.00606 0.95078 0.93143 0.89077 0.87877 0.90447 0.91799 0.88836 0.95796 0.98894 0.92373 0.86764 0.90486 0.86076 0.89119 0.78241 0.77228 0.93541 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.65 71.98 0.62 -2.03 16 2 C 0.07 1.82 1.44 44.17 0.06 1.88 16 3 H 0.08 1.89 7.13 -2.39 -0.02 1.87 16 4 C 0.50 20.68 6.86 87.66 0.60 21.29 16 5 O -0.58 -31.25 14.52 -3.02 -0.04 -31.30 16 6 N -0.61 -25.88 2.86 -851.12 -2.43 -28.32 16 7 C 0.08 2.15 8.79 127.77 1.12 3.28 16 8 C 0.26 14.45 5.16 85.63 0.44 14.89 16 9 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.01 0.48 5.46 84.66 0.46 0.95 16 12 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 13 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 17 N -0.51 -12.90 4.82 -862.22 -4.16 -17.05 16 18 C 0.04 0.49 5.17 86.65 0.45 0.94 16 19 C -0.12 -1.48 6.61 31.80 0.21 -1.27 16 20 C 0.15 3.15 4.11 45.87 0.19 3.34 16 21 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 22 N -0.36 -8.99 3.48 -323.20 -1.12 -10.11 16 23 C 0.08 1.99 10.42 83.54 0.87 2.86 16 24 C -0.20 -4.99 6.65 22.02 0.15 -4.84 16 25 Cl -0.04 -0.89 29.30 -2.72 -0.08 -0.97 16 26 C 0.06 1.48 12.02 85.25 1.02 2.51 16 27 N -0.32 -9.06 12.57 -56.98 -0.72 -9.78 16 28 C 0.04 1.10 5.48 86.45 0.47 1.58 16 29 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.09 1.42 4.74 -2.39 -0.01 1.41 16 31 H 0.10 1.10 6.45 -2.39 -0.02 1.09 16 32 H 0.08 1.75 7.10 -2.38 -0.02 1.74 16 33 H 0.06 1.94 8.07 -2.38 -0.02 1.92 16 34 H 0.09 1.94 5.94 -2.39 -0.01 1.93 16 35 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16 36 H -0.01 -0.46 7.42 -2.39 -0.02 -0.47 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.11 1.09 7.50 -2.39 -0.02 1.08 16 39 H 0.08 0.69 8.02 -2.38 -0.02 0.67 16 40 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 1.12 5.94 -2.39 -0.01 1.11 16 42 H 0.20 3.74 6.87 -2.91 -0.02 3.72 16 43 H 0.21 3.90 8.06 -2.91 -0.02 3.87 16 44 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16 45 H 0.05 1.97 7.08 -2.38 -0.02 1.95 16 Total: -1.00 -83.87 374.43 1.68 -82.18 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.01 Total: 10.53 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.92 Total: 13.67 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -8.14 Total: -122.15 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.04 Total: -31.30 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -83.87 1.68 -82.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289977908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.956 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds