Wall clock time and date at job start Sat Apr 11 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.60612 * 2 1 4 4 C 1.53377 * 109.60703 * 239.49030 * 2 1 3 5 5 N 1.46998 * 108.76671 * 190.92304 * 4 2 1 6 6 C 1.34775 * 120.61284 * 235.15557 * 5 4 2 7 7 O 1.21600 * 119.99970 * 185.83648 * 6 5 4 8 8 N 1.34773 * 120.00138 * 5.83516 * 6 5 4 9 9 C 1.40217 * 120.00026 * 186.77907 * 8 6 5 10 10 C 1.39147 * 120.46825 * 16.24429 * 9 8 6 11 11 C 1.38544 * 118.42240 * 180.02562 * 10 9 8 12 12 C 1.38453 * 119.26380 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.56131 * 180.02562 * 12 11 10 14 14 N 1.32095 * 120.87808 * 0.02739 * 12 11 10 15 15 C 1.32031 * 121.71751 * 359.65686 * 14 12 11 16 16 F 1.35102 * 119.67657 * 180.33788 * 15 14 12 17 17 C 1.46968 * 118.79499 * 54.92084 * 5 4 2 18 18 C 1.53377 * 108.77367 * 305.07642 * 17 5 4 19 19 H 1.09000 * 109.60807 * 289.59274 * 18 17 5 20 20 C 1.52998 * 109.60658 * 169.08223 * 18 17 5 21 21 N 1.46955 * 109.60978 * 120.34272 * 2 1 3 22 22 C 1.36941 * 120.59646 * 354.94968 * 21 2 1 23 23 H 1.07991 * 120.00284 * 126.22168 * 22 21 2 24 24 C 1.38808 * 119.99678 * 306.21731 * 22 21 2 25 25 N 1.31620 * 120.00609 * 336.02578 * 24 22 21 26 26 Si 1.86801 * 119.99950 * 156.02576 * 24 22 21 27 27 H 1.48502 * 109.47208 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47004 * 119.99812 * 26 24 22 29 29 H 1.48503 * 109.47445 * 239.99972 * 26 24 22 30 30 H 1.08999 * 109.46841 * 307.85394 * 1 2 3 31 31 H 1.09001 * 109.47238 * 67.85576 * 1 2 3 32 32 H 1.08997 * 109.46985 * 187.85340 * 1 2 3 33 33 H 1.09000 * 109.60906 * 310.57074 * 4 2 1 34 34 H 1.08994 * 109.61131 * 70.91323 * 4 2 1 35 35 H 0.96998 * 120.00456 * 6.77925 * 8 6 5 36 36 H 1.07997 * 120.78294 * 359.97438 * 10 9 8 37 37 H 1.08004 * 120.36473 * 180.02562 * 11 10 9 38 38 H 1.08994 * 109.61442 * 185.24461 * 17 5 4 39 39 H 1.08996 * 109.60858 * 64.90365 * 17 5 4 40 40 H 1.08998 * 109.47467 * 59.99892 * 20 18 17 41 41 H 1.09009 * 109.46907 * 179.97438 * 20 18 17 42 42 H 1.08999 * 109.47042 * 299.99618 * 20 18 17 43 43 H 0.96997 * 120.00478 * 185.04501 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7335 -1.2448 5 7 3.4908 -0.9541 -1.0996 6 6 4.3493 -0.5220 -2.0445 7 8 5.5300 -0.8021 -1.9671 8 7 3.8990 0.2205 -3.0752 9 6 4.7609 0.5502 -4.1309 10 6 5.9564 -0.1397 -4.3075 11 6 6.7763 0.2215 -5.3642 12 6 6.3835 1.2489 -6.2051 13 9 7.1782 1.6057 -7.2378 14 7 5.2421 1.8849 -6.0111 15 6 4.4302 1.5670 -5.0197 16 9 3.2694 2.2405 -4.8636 17 6 3.9842 -1.6498 0.0973 18 6 3.4694 -0.9163 1.3420 19 1 3.9757 0.0444 1.4360 20 6 3.7372 -1.7657 2.5860 21 7 2.0233 -0.6993 1.1947 22 6 1.1511 -1.1405 2.1538 23 1 1.1682 -2.1746 2.4647 24 6 0.2452 -0.2585 2.7266 25 7 0.4981 1.0331 2.7328 26 14 -1.3332 -0.9047 3.4886 27 1 -1.3790 -2.3829 3.3537 28 1 -1.3748 -0.5379 4.9269 29 1 -2.5004 -0.3072 2.7914 30 1 -0.3633 0.6306 0.8114 31 1 -0.3634 0.3874 -0.9519 32 1 -0.3633 -1.0180 0.1404 33 1 1.5384 -1.6942 -1.3388 34 1 1.8513 -0.1297 -2.1313 35 1 2.9788 0.5269 -3.0868 36 1 6.2387 -0.9371 -3.6361 37 1 7.7111 -0.2932 -5.5307 38 1 5.0741 -1.6498 0.0973 39 1 3.6184 -2.6766 0.1004 40 1 4.8089 -1.9380 2.6846 41 1 3.3709 -1.2422 3.4692 42 1 3.2228 -2.7219 2.4906 43 1 -0.0979 1.6419 3.1965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879654142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:42 Heat of formation + Delta-G solvation = -19.697271 kcal Electronic energy + Delta-G solvation = -30363.512013 eV Core-core repulsion = 25889.234663 eV Total energy + Delta-G solvation = -4474.277350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.34025 -49.24409 -41.10935 -39.70529 -37.76393 -35.34173 -34.49869 -33.12415 -32.47368 -31.41241 -29.74201 -27.85589 -26.35318 -25.85347 -24.51273 -24.10240 -23.31132 -20.59927 -20.55644 -19.60268 -19.01443 -18.69584 -17.71000 -17.42880 -16.85312 -16.26350 -16.13345 -15.76077 -15.66780 -15.25917 -14.92692 -14.87561 -14.60918 -14.18568 -13.83434 -13.64044 -13.55229 -13.35128 -13.16293 -13.09668 -12.69543 -12.23359 -11.73658 -11.67223 -11.45231 -11.31757 -11.20969 -10.87849 -10.66235 -10.62431 -10.54748 -10.45306 -10.21491 -10.11355 -10.05127 -9.87220 -9.64960 -8.70532 -8.34982 -8.11379 -6.49905 -5.93041 -3.67506 0.42395 0.70896 2.31061 2.80192 2.87090 3.20255 3.29713 3.32050 3.34116 3.62807 3.69925 4.25859 4.29357 4.44257 4.81415 4.94357 5.11295 5.19843 5.43820 5.50520 5.54282 5.67895 5.76323 5.85246 5.88755 5.93911 6.00796 6.19645 6.30641 6.38438 6.40976 6.44038 6.53401 6.59668 6.67865 6.86277 6.97858 7.00779 7.16348 7.22622 7.46417 7.74245 7.79881 8.37784 8.47624 9.01811 9.56088 10.33627 11.00531 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.002865 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.001379 B = 9771.554687 C =10664.530140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.181 3.819 3 H 0.033 0.967 4 C 0.088 3.912 5 N -0.601 5.601 6 C 0.707 3.293 7 O -0.582 6.582 8 N -0.675 5.675 9 C 0.114 3.886 10 C -0.054 4.054 11 C -0.170 4.170 12 C 0.306 3.694 13 F -0.108 7.108 14 N -0.521 5.521 15 C 0.301 3.699 16 F -0.103 7.103 17 C 0.115 3.885 18 C 0.154 3.846 19 H 0.030 0.970 20 C -0.126 4.126 21 N -0.574 5.574 22 C -0.275 4.275 23 H 0.056 0.944 24 C 0.044 3.956 25 N -0.871 5.871 26 Si 0.882 3.118 27 H -0.272 1.272 28 H -0.287 1.287 29 H -0.284 1.284 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.416 0.584 36 H 0.194 0.806 37 H 0.160 0.840 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -3.229 -12.620 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.051 0.949 4 C -0.037 4.037 5 N -0.334 5.334 6 C 0.409 3.591 7 O -0.462 6.462 8 N -0.323 5.323 9 C 0.011 3.989 10 C -0.081 4.081 11 C -0.192 4.192 12 C 0.151 3.849 13 F -0.087 7.087 14 N -0.241 5.241 15 C 0.143 3.857 16 F -0.082 7.082 17 C -0.009 4.009 18 C 0.047 3.953 19 H 0.047 0.953 20 C -0.184 4.184 21 N -0.299 5.299 22 C -0.404 4.404 23 H 0.073 0.927 24 C -0.160 4.160 25 N -0.509 5.509 26 Si 0.709 3.291 27 H -0.196 1.196 28 H -0.214 1.214 29 H -0.210 1.210 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.210 0.790 37 H 0.177 0.823 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.696 -2.638 -12.989 15.326 hybrid contribution -1.387 -0.101 0.627 1.525 sum 6.310 -2.739 -12.362 14.147 Atomic orbital electron populations 1.21989 0.94770 1.02972 1.00479 1.20617 0.93976 0.93538 0.84510 0.94918 1.22690 0.79327 1.01518 1.00149 1.47332 1.06708 1.58399 1.20971 1.15767 0.85064 0.78938 0.79326 1.90732 1.14783 1.63298 1.77345 1.42793 1.14785 1.54758 1.19935 1.18317 0.94350 0.95858 0.90343 1.22249 0.90618 0.99171 0.96103 1.21885 1.03206 0.98576 0.95528 1.17467 0.86784 0.93408 0.87200 1.91646 1.70048 1.91363 1.55656 1.65967 1.05276 1.31056 1.21806 1.16956 0.84565 0.90849 0.93281 1.91661 1.43350 1.78896 1.94286 1.22357 0.99435 0.95423 0.83654 1.20921 0.87311 0.95611 0.91427 0.95269 1.21627 0.98258 1.00052 0.98464 1.43941 0.99448 1.67698 1.18782 1.18628 1.12313 0.92498 1.16977 0.92698 1.25573 0.99799 0.95249 0.95375 1.70104 1.36459 1.02481 1.41885 0.86607 0.84310 0.79364 0.78772 1.19639 1.21395 1.20965 0.89166 0.95555 0.92570 0.90824 0.92237 0.74420 0.78982 0.82277 0.89784 0.91608 0.94350 0.91308 0.92762 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.84 37.16 0.29 -2.54 16 2 C 0.18 3.57 3.31 -67.48 -0.22 3.35 16 3 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.09 1.37 5.88 -3.58 -0.02 1.35 16 5 N -0.60 -9.66 2.96 -178.18 -0.53 -10.18 16 6 C 0.71 10.96 8.16 -86.92 -0.71 10.25 16 7 O -0.58 -9.83 12.62 5.28 0.07 -9.77 16 8 N -0.67 -8.85 5.26 -14.04 -0.07 -8.93 16 9 C 0.11 1.43 6.57 -83.38 -0.55 0.89 16 10 C -0.05 -0.62 8.93 -39.13 -0.35 -0.97 16 11 C -0.17 -1.64 10.07 -39.39 -0.40 -2.04 16 12 C 0.31 3.56 8.40 -17.36 -0.15 3.41 16 13 F -0.11 -1.22 17.29 2.25 0.04 -1.18 16 14 N -0.52 -7.05 10.38 -13.80 -0.14 -7.19 16 15 C 0.30 3.92 8.43 -17.17 -0.14 3.77 16 16 F -0.10 -1.33 16.75 2.25 0.04 -1.30 16 17 C 0.12 1.92 5.89 -3.59 -0.02 1.90 16 18 C 0.15 3.00 3.66 -67.48 -0.25 2.76 16 19 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 20 C -0.13 -2.26 8.18 37.16 0.30 -1.95 16 21 N -0.57 -12.52 2.75 -157.02 -0.43 -12.95 16 22 C -0.27 -6.55 6.60 -15.06 -0.10 -6.65 16 23 H 0.06 1.34 7.19 -52.49 -0.38 0.97 16 24 C 0.04 1.07 3.11 -17.43 -0.05 1.01 16 25 N -0.87 -22.79 12.03 55.49 0.67 -22.12 16 26 Si 0.88 19.37 29.62 -169.99 -5.03 14.33 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.09 2.06 5.07 -51.93 -0.26 1.80 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.12 7.55 -51.93 -0.39 0.72 16 33 H 0.07 1.14 8.12 -51.93 -0.42 0.71 16 34 H 0.06 0.76 5.62 -51.93 -0.29 0.47 16 35 H 0.42 4.90 5.86 -40.82 -0.24 4.66 16 36 H 0.19 2.36 5.35 -52.49 -0.28 2.08 16 37 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.08 1.37 7.03 -51.93 -0.36 1.01 16 39 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.39 7.75 -51.92 -0.40 0.98 16 42 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 43 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -27.19 350.01 -7.58 -34.77 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.09 Total: 4.70 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: -2.36 Total: 14.54 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.51 Total: -61.38 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.08 Total: -2.47 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.19 -7.58 -34.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879654142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.069 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds