Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.60881 * 2 1 4 4 C 1.53377 * 109.60874 * 239.48113 * 2 1 3 5 5 N 1.46958 * 108.63350 * 190.83088 * 4 2 1 6 6 C 1.34773 * 120.59616 * 235.20285 * 5 4 2 7 7 O 1.21580 * 120.00293 * 184.99870 * 6 5 4 8 8 N 1.34778 * 119.99861 * 5.00520 * 6 5 4 9 9 C 1.39680 * 119.99911 * 184.68352 * 8 6 5 10 10 C 1.39431 * 120.85053 * 326.98978 * 9 8 6 11 11 C 1.37888 * 119.15344 * 179.72605 * 10 9 8 12 12 N 1.32021 * 120.91224 * 0.56217 * 11 10 9 13 13 C 1.32135 * 121.86693 * 359.71627 * 12 11 10 14 14 F 1.35098 * 119.62530 * 179.97438 * 13 12 11 15 15 C 1.38469 * 120.74434 * 359.97438 * 13 12 11 16 16 F 1.35100 * 120.49103 * 179.97438 * 15 13 12 17 17 C 1.46971 * 118.81019 * 55.23110 * 5 4 2 18 18 C 1.53369 * 108.63483 * 304.77041 * 17 5 4 19 19 H 1.08998 * 109.74735 * 169.25171 * 18 17 5 20 20 C 1.52997 * 109.60922 * 289.67918 * 18 17 5 21 21 N 1.46958 * 108.63362 * 49.42743 * 18 17 5 22 22 C 1.36935 * 120.59464 * 124.79897 * 21 18 17 23 23 H 1.08009 * 119.99558 * 212.44800 * 22 21 18 24 24 C 1.38808 * 120.00063 * 32.44488 * 22 21 18 25 25 N 1.31619 * 120.00109 * 10.37711 * 24 22 21 26 26 Si 1.86804 * 119.99831 * 190.37658 * 24 22 21 27 27 H 1.48501 * 109.47370 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47298 * 120.00140 * 26 24 22 29 29 H 1.48507 * 109.46904 * 240.00031 * 26 24 22 30 30 H 1.09003 * 109.47112 * 299.65905 * 1 2 3 31 31 H 1.08998 * 109.47472 * 59.66328 * 1 2 3 32 32 H 1.09004 * 109.47289 * 179.65926 * 1 2 3 33 33 H 1.08999 * 109.60740 * 310.58250 * 4 2 1 34 34 H 1.09002 * 109.60259 * 71.08734 * 4 2 1 35 35 H 0.97004 * 120.00271 * 4.68796 * 8 6 5 36 36 H 1.07989 * 120.42029 * 0.02562 * 10 9 8 37 37 H 1.07995 * 119.54351 * 180.27394 * 11 10 9 38 38 H 1.09002 * 109.60510 * 185.02564 * 17 5 4 39 39 H 1.09000 * 109.61036 * 64.51539 * 17 5 4 40 40 H 1.08998 * 109.47199 * 179.14428 * 20 18 17 41 41 H 1.09001 * 109.47126 * 299.14678 * 20 18 17 42 42 H 1.09007 * 109.47150 * 59.14938 * 20 18 17 43 43 H 0.97001 * 120.00015 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7337 -1.2447 5 7 3.4907 -0.9507 -1.0974 6 6 4.3491 -0.5166 -2.0414 7 8 5.5327 -0.7807 -1.9545 8 7 3.8955 0.2103 -3.0817 9 6 4.7667 0.5769 -4.1102 10 6 6.1106 0.8407 -3.8488 11 6 6.9409 1.1943 -4.8914 12 7 6.4771 1.2957 -6.1233 13 6 5.2097 1.0600 -6.4132 14 9 4.7835 1.1778 -7.6898 15 6 4.3134 0.6937 -5.4233 16 9 3.0185 0.4545 -5.7253 17 6 3.9839 -1.6500 0.0975 18 6 3.4692 -0.9164 1.3421 19 1 3.6601 -1.5190 2.2301 20 6 4.1800 0.4320 1.4740 21 7 2.0232 -0.6994 1.1948 22 6 1.1510 -1.1404 2.1540 23 1 0.1606 -1.4677 1.8738 24 6 1.5399 -1.1669 3.4862 25 7 2.6600 -0.5835 3.8566 26 14 0.4733 -2.0307 4.7534 27 1 -0.7240 -2.6020 4.0861 28 1 1.2510 -3.1214 5.3943 29 1 0.0446 -1.0548 5.7875 30 1 -0.3633 0.5085 0.8930 31 1 -0.3634 0.5190 -0.8869 32 1 -0.3634 -1.0277 -0.0061 33 1 1.5382 -1.6943 -1.3386 34 1 1.8539 -0.1285 -2.1310 35 1 2.9640 0.4790 -3.1163 36 1 6.4974 0.7642 -2.8435 37 1 7.9839 1.3956 -4.6968 38 1 5.0739 -1.6500 0.0974 39 1 3.6156 -2.6759 0.0991 40 1 3.8017 0.9580 2.3505 41 1 5.2522 0.2684 1.5830 42 1 3.9926 1.0304 0.5823 43 1 2.9315 -0.6017 4.7877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880157191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = -28.382736 kcal Electronic energy + Delta-G solvation = -30606.894276 eV Core-core repulsion = 26132.240296 eV Total energy + Delta-G solvation = -4474.653980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.75557 -48.85603 -41.09886 -39.76270 -37.80530 -35.48351 -34.33017 -32.83811 -31.72085 -30.90469 -30.64923 -28.06276 -26.52865 -25.86744 -24.14578 -23.91083 -23.57520 -21.15372 -20.65008 -19.37696 -18.84587 -18.29619 -18.01194 -17.35321 -16.86324 -16.51820 -16.13289 -15.66627 -15.31040 -15.22021 -15.13833 -14.76154 -14.37783 -14.24650 -14.01908 -13.74036 -13.43612 -13.37102 -13.21262 -13.01816 -12.84206 -12.13513 -11.88741 -11.71902 -11.42024 -11.22656 -11.09448 -10.91471 -10.73960 -10.72950 -10.46565 -10.24844 -10.18434 -9.92543 -9.85533 -9.62304 -9.20210 -9.02173 -8.61226 -8.35105 -6.72376 -5.91597 -3.42828 0.43550 0.62399 2.28762 2.95261 3.05024 3.27478 3.29836 3.36709 3.37405 3.66167 3.74801 4.19574 4.31583 4.35262 4.75541 4.96784 5.15508 5.24845 5.35313 5.42040 5.45349 5.63393 5.69960 5.80064 5.94328 6.00338 6.09657 6.14474 6.18660 6.29870 6.36502 6.42679 6.59341 6.70784 6.77867 6.85055 6.89984 6.94456 7.24175 7.47865 7.57623 7.71183 7.81923 8.32747 8.41870 9.07402 9.66639 10.24334 11.14948 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002874 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.790300 B = 9741.251913 C =10479.843099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.154 3.846 3 H 0.032 0.968 4 C 0.094 3.906 5 N -0.598 5.598 6 C 0.705 3.295 7 O -0.576 6.576 8 N -0.681 5.681 9 C 0.221 3.779 10 C -0.161 4.161 11 C 0.145 3.855 12 N -0.506 5.506 13 C 0.302 3.698 14 F -0.102 7.102 15 C -0.014 4.014 16 F -0.120 7.120 17 C 0.108 3.892 18 C 0.178 3.822 19 H 0.111 0.889 20 C -0.138 4.138 21 N -0.580 5.580 22 C -0.256 4.256 23 H 0.071 0.929 24 C 0.008 3.992 25 N -0.898 5.898 26 Si 0.903 3.097 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.290 1.290 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.414 0.586 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.019 0.981 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 2.998 -14.243 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.050 0.950 4 C -0.031 4.031 5 N -0.332 5.332 6 C 0.407 3.593 7 O -0.454 6.454 8 N -0.331 5.331 9 C 0.113 3.887 10 C -0.184 4.184 11 C -0.011 4.011 12 N -0.222 5.222 13 C 0.146 3.854 14 F -0.081 7.081 15 C -0.041 4.041 16 F -0.098 7.098 17 C -0.016 4.016 18 C 0.071 3.929 19 H 0.129 0.871 20 C -0.196 4.196 21 N -0.303 5.303 22 C -0.385 4.385 23 H 0.088 0.912 24 C -0.191 4.191 25 N -0.541 5.541 26 Si 0.733 3.267 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.217 1.217 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.254 0.746 36 H 0.192 0.808 37 H 0.197 0.803 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.488 2.957 -14.583 15.542 hybrid contribution -1.984 -0.480 0.974 2.262 sum 2.504 2.477 -13.609 14.057 Atomic orbital electron populations 1.21772 0.95012 1.01809 1.00815 1.20776 0.93443 0.93917 0.87224 0.95023 1.22468 0.80104 1.01219 0.99304 1.47306 1.06274 1.58536 1.21048 1.15758 0.85417 0.78729 0.79357 1.90869 1.14403 1.62900 1.77202 1.42786 1.13498 1.55627 1.21170 1.17677 0.91627 0.94222 0.85129 1.22533 0.91611 1.00326 1.03930 1.22548 1.00631 0.92973 0.84920 1.67177 1.12291 1.18235 1.24503 1.17798 0.88802 0.99230 0.79558 1.91658 1.88718 1.93055 1.34661 1.18096 0.80889 1.12976 0.92141 1.91531 1.32391 1.92537 1.93368 1.22580 0.99660 0.95345 0.83986 1.20814 0.82919 0.95059 0.94131 0.87113 1.21977 0.97698 0.99272 1.00702 1.44108 1.01930 1.64514 1.19707 1.19177 0.97103 1.36481 0.85753 0.91182 1.25191 0.97657 0.99007 0.97221 1.69935 1.23289 1.44707 1.16188 0.86223 0.79926 0.78967 0.81593 1.20298 1.21571 1.21705 0.91342 0.94105 0.92441 0.90841 0.92232 0.74558 0.80804 0.80321 0.89745 0.91949 0.90513 0.95181 0.96233 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 7.97 37.16 0.30 -1.87 16 2 C 0.15 2.73 3.23 -67.48 -0.22 2.51 16 3 H 0.03 0.60 7.41 -51.93 -0.38 0.22 16 4 C 0.09 1.39 5.90 -3.60 -0.02 1.37 16 5 N -0.60 -9.73 2.59 -178.21 -0.46 -10.19 16 6 C 0.71 11.16 8.17 -86.92 -0.71 10.45 16 7 O -0.58 -10.26 13.14 5.30 0.07 -10.19 16 8 N -0.68 -8.81 5.17 -14.02 -0.07 -8.89 16 9 C 0.22 2.75 6.38 -83.40 -0.53 2.22 16 10 C -0.16 -1.85 8.79 -39.27 -0.35 -2.20 16 11 C 0.14 1.43 11.17 -17.60 -0.20 1.23 16 12 N -0.51 -6.01 10.37 -13.63 -0.14 -6.15 16 13 C 0.30 3.71 8.41 -17.34 -0.15 3.57 16 14 F -0.10 -1.27 17.21 2.25 0.04 -1.23 16 15 C -0.01 -0.17 7.36 -39.06 -0.29 -0.46 16 16 F -0.12 -1.45 16.95 2.25 0.04 -1.41 16 17 C 0.11 1.95 5.96 -3.59 -0.02 1.93 16 18 C 0.18 3.74 2.33 -67.49 -0.16 3.58 16 19 H 0.11 2.67 6.08 -51.93 -0.32 2.36 16 20 C -0.14 -2.86 8.92 37.16 0.33 -2.53 16 21 N -0.58 -12.50 2.68 -157.02 -0.42 -12.92 16 22 C -0.26 -6.12 8.50 -15.06 -0.13 -6.25 16 23 H 0.07 1.65 6.31 -52.48 -0.33 1.32 16 24 C 0.01 0.21 5.05 -17.43 -0.09 0.12 16 25 N -0.90 -23.32 9.91 55.49 0.55 -22.77 16 26 Si 0.90 20.06 29.57 -169.99 -5.03 15.03 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.07 1.21 7.70 -51.93 -0.40 0.82 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.92 7.36 -51.93 -0.38 0.54 16 33 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 34 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 35 H 0.41 4.63 6.18 -40.82 -0.25 4.38 16 36 H 0.17 2.16 6.17 -52.49 -0.32 1.83 16 37 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.08 1.54 6.99 -51.93 -0.36 1.17 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.82 7.09 -51.93 -0.37 1.45 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.38 7.02 -51.92 -0.36 0.02 16 43 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -27.37 349.82 -7.40 -34.77 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.02 Total: 5.00 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -2.22 Total: 13.67 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.55 Total: -60.91 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.37 -7.40 -34.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880157191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.387 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds