Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.61189 * 2 1 4 4 C 1.53374 * 109.60751 * 239.65834 * 2 1 3 5 5 N 1.46972 * 108.63077 * 190.83374 * 4 2 1 6 6 C 1.34780 * 120.59060 * 235.20572 * 5 4 2 7 7 O 1.21278 * 119.99708 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99897 * 180.02562 * 6 5 4 9 9 C 1.50696 * 109.47422 * 179.97438 * 8 6 5 10 10 C 1.35305 * 126.04926 * 99.99717 * 9 8 6 11 11 N 1.34940 * 107.76805 * 180.02562 * 10 9 8 12 12 C 1.46500 * 126.02745 * 179.97438 * 11 10 9 13 13 N 1.40078 * 107.95133 * 0.24194 * 11 10 9 14 14 C 1.30900 * 108.19895 * 359.58896 * 13 11 10 15 15 Cl 1.73609 * 125.91364 * 180.14582 * 14 13 11 16 16 C 1.46959 * 118.81329 * 55.48183 * 5 4 2 17 17 C 1.53819 * 108.39754 * 304.48142 * 16 5 4 18 18 H 1.08996 * 109.67062 * 169.38940 * 17 16 5 19 19 C 1.53003 * 109.73812 * 289.84997 * 17 16 5 20 20 N 1.46962 * 108.57817 * 49.63660 * 17 16 5 21 21 C 1.36938 * 120.59081 * 124.62916 * 20 17 16 22 22 H 1.08006 * 119.99591 * 208.70693 * 21 20 17 23 23 C 1.38812 * 120.00151 * 28.70429 * 21 20 17 24 24 N 1.31619 * 119.99975 * 17.31706 * 23 21 20 25 25 Si 1.86797 * 119.99897 * 197.31558 * 23 21 20 26 26 H 1.48500 * 109.47259 * 60.00078 * 25 23 21 27 27 H 1.48499 * 109.47289 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47160 * 299.99754 * 25 23 21 29 29 H 1.08992 * 109.47378 * 180.34183 * 1 2 3 30 30 H 1.09004 * 109.46906 * 300.34405 * 1 2 3 31 31 H 1.08997 * 109.46937 * 60.33397 * 1 2 3 32 32 H 1.09003 * 109.60980 * 71.09154 * 4 2 1 33 33 H 1.08995 * 109.60963 * 310.57466 * 4 2 1 34 34 H 1.09009 * 109.46853 * 59.99507 * 8 6 5 35 35 H 1.08998 * 109.46854 * 299.99782 * 8 6 5 36 36 H 1.08003 * 126.11517 * 0.02562 * 10 9 8 37 37 H 1.08999 * 109.47937 * 89.99229 * 12 11 10 38 38 H 1.09002 * 109.46888 * 329.99693 * 12 11 10 39 39 H 1.08997 * 109.47370 * 209.99936 * 12 11 10 40 40 H 1.08997 * 109.60964 * 64.26050 * 16 5 4 41 41 H 1.08997 * 109.61251 * 184.77797 * 16 5 4 42 42 H 1.09004 * 109.46878 * 179.16209 * 19 17 16 43 43 H 1.09000 * 109.46787 * 299.15409 * 19 17 16 44 44 H 1.08997 * 109.47090 * 59.15631 * 19 17 16 45 45 H 0.97001 * 119.99793 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0267 0.0000 4 6 2.0447 -0.7299 -1.2469 5 7 3.4908 -0.9473 -1.1002 6 6 4.3492 -0.5103 -2.0429 7 8 3.9303 0.0678 -3.0233 8 6 5.8294 -0.7410 -1.8793 9 6 6.5620 -0.1609 -3.0615 10 6 7.2038 1.0298 -3.0946 11 7 7.7277 1.1811 -4.3289 12 6 8.5045 2.3303 -4.8003 13 7 7.3926 0.0485 -5.0819 14 6 6.6985 -0.7584 -4.3200 15 17 6.0526 -2.2995 -4.7909 16 6 3.9835 -1.6552 0.0896 17 6 3.4692 -0.9205 1.3393 18 1 3.6602 -1.5258 2.2254 19 6 4.1801 0.4276 1.4753 20 7 2.0232 -0.7030 1.1927 21 6 1.1510 -1.1477 2.1500 22 1 0.1411 -1.4168 1.8774 23 6 1.5647 -1.2529 3.4709 24 7 2.6481 -0.6231 3.8733 25 14 0.5837 -2.2881 4.6773 26 1 0.5405 -3.6943 4.2019 27 1 1.2297 -2.2364 6.0134 28 1 -0.7992 -1.7561 4.7758 29 1 -0.3634 -1.0276 0.0061 30 1 -0.3633 0.5192 0.8869 31 1 -0.3633 0.5086 -0.8929 32 1 1.8540 -0.1220 -2.1314 33 1 1.5384 -1.6902 -1.3438 34 1 6.0259 -1.8116 -1.8200 35 1 6.1736 -0.2573 -0.9651 36 1 7.2827 1.7333 -2.2789 37 1 9.5630 2.1579 -4.6057 38 1 8.1801 3.2284 -4.2746 39 1 8.3483 2.4598 -5.8712 40 1 3.6119 -2.6799 0.0857 41 1 5.0735 -1.6586 0.0881 42 1 3.8018 0.9508 2.3535 43 1 5.2522 0.2636 1.5839 44 1 3.9927 1.0285 0.5855 45 1 2.9370 -0.6963 4.7964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880454649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = 72.987343 kcal Electronic energy + Delta-G solvation = -28446.786115 eV Core-core repulsion = 24528.324552 eV Total energy + Delta-G solvation = -3918.461563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44409 -39.54597 -37.24946 -36.73314 -33.98053 -33.67805 -32.81696 -31.78635 -31.11060 -28.69241 -27.88790 -26.60370 -25.83070 -24.94167 -23.49814 -21.38484 -21.00833 -20.82994 -19.49805 -18.37641 -17.03600 -16.91027 -15.84754 -15.72176 -15.32742 -15.16089 -15.12818 -14.81030 -14.00842 -13.86707 -13.60836 -13.57039 -13.40976 -13.16533 -12.96581 -12.67928 -12.53450 -12.09983 -11.79465 -11.71548 -11.69117 -11.51697 -11.37741 -11.13970 -11.01892 -10.75351 -10.65042 -10.59897 -10.51576 -10.15753 -10.08805 -9.77459 -9.57132 -9.39815 -9.25156 -8.52508 -8.47734 -8.08138 -6.64225 -5.82922 -3.26033 1.44436 1.63309 2.42362 2.76583 3.13226 3.35596 3.41714 3.43161 3.63445 4.33540 4.45401 4.63262 4.85549 4.96392 5.09561 5.11128 5.15822 5.23561 5.34585 5.46334 5.61491 5.75244 5.80380 5.87939 5.96310 6.09672 6.10636 6.19035 6.21892 6.28194 6.41867 6.46273 6.60763 6.73862 6.75471 6.85447 6.93975 7.04414 7.15129 7.33402 7.52548 7.62667 7.79399 8.03814 8.40277 8.71081 9.17103 9.79083 10.36315 11.24183 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.002990 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.081028 B = 9362.959260 C = 9644.886330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.156 3.844 3 H 0.030 0.970 4 C 0.102 3.898 5 N -0.596 5.596 6 C 0.513 3.487 7 O -0.550 6.550 8 C -0.064 4.064 9 C -0.196 4.196 10 C 0.076 3.924 11 N -0.366 5.366 12 C 0.104 3.896 13 N -0.286 5.286 14 C 0.143 3.857 15 Cl 0.005 6.995 16 C 0.084 3.916 17 C 0.178 3.822 18 H 0.107 0.893 19 C -0.142 4.142 20 N -0.581 5.581 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.899 5.899 25 Si 0.900 3.100 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.182 0.818 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.024 0.976 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.340 2.467 -11.869 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.022 4.022 5 N -0.328 5.328 6 C 0.300 3.700 7 O -0.429 6.429 8 C -0.105 4.105 9 C -0.208 4.208 10 C -0.070 4.070 11 N -0.149 5.149 12 C -0.037 4.037 13 N -0.112 5.112 14 C -0.049 4.049 15 Cl 0.032 6.968 16 C -0.040 4.040 17 C 0.071 3.929 18 H 0.124 0.876 19 C -0.201 4.201 20 N -0.304 5.304 21 C -0.380 4.380 22 H 0.088 0.912 23 C -0.194 4.194 24 N -0.543 5.543 25 Si 0.730 3.270 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.210 1.210 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.199 0.801 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.697 2.955 -13.442 18.062 hybrid contribution -0.811 -0.728 1.556 1.900 sum 10.886 2.227 -11.886 16.271 Atomic orbital electron populations 1.21757 0.95414 1.01624 1.00517 1.20776 0.93179 0.94000 0.87178 0.95245 1.22212 0.79581 1.00566 0.99849 1.47987 1.07107 1.56398 1.21269 1.20420 0.88146 0.78889 0.82522 1.90641 1.79162 1.42828 1.30247 1.19964 0.91802 1.02605 0.96109 1.19277 1.09018 0.96828 0.95684 1.22304 0.97322 0.97874 0.89466 1.48130 1.42556 1.15616 1.08628 1.21914 0.94989 0.84293 1.02466 1.77301 1.20454 0.95247 1.18200 1.22436 0.98892 0.90791 0.92743 1.98385 1.83725 1.22165 1.92494 1.22750 0.98105 0.96350 0.86790 1.20812 0.83239 0.94785 0.94096 0.87571 1.22025 0.97310 0.99617 1.01166 1.44136 1.01814 1.64429 1.19980 1.19149 0.95545 1.36765 0.86578 0.91170 1.25024 0.98185 0.99526 0.96688 1.69984 1.25777 1.42427 1.16112 0.86416 0.79547 0.80676 0.80365 1.21117 1.21759 1.21037 0.92570 0.91742 0.94086 0.90280 0.92187 0.88285 0.87912 0.80053 0.90491 0.89047 0.89126 0.91908 0.91027 0.90511 0.95392 0.95714 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.16 0.30 -2.19 16 2 C 0.16 3.16 3.22 -67.48 -0.22 2.94 16 3 H 0.03 0.65 7.41 -51.93 -0.38 0.27 16 4 C 0.10 1.90 5.90 -3.59 -0.02 1.87 16 5 N -0.60 -10.54 2.58 -172.21 -0.44 -10.99 16 6 C 0.51 8.82 7.69 -10.99 -0.08 8.74 16 7 O -0.55 -11.15 15.44 5.56 0.09 -11.07 16 8 C -0.06 -0.86 4.38 -29.04 -0.13 -0.99 16 9 C -0.20 -2.71 4.60 -105.02 -0.48 -3.19 16 10 C 0.08 0.88 11.40 -17.23 -0.20 0.68 16 11 N -0.37 -4.21 4.01 -68.17 -0.27 -4.48 16 12 C 0.10 0.66 11.47 59.85 0.69 1.34 16 13 N -0.29 -4.20 12.58 32.95 0.41 -3.79 16 14 C 0.14 2.14 7.84 -17.30 -0.14 2.00 16 15 Cl 0.00 0.06 29.16 -51.86 -1.51 -1.45 16 16 C 0.08 1.45 5.92 -3.37 -0.02 1.43 16 17 C 0.18 3.72 2.35 -67.25 -0.16 3.57 16 18 H 0.11 2.52 6.01 -51.93 -0.31 2.21 16 19 C -0.14 -2.86 8.96 37.16 0.33 -2.53 16 20 N -0.58 -13.21 2.68 -156.76 -0.42 -13.63 16 21 C -0.25 -6.28 8.60 -15.06 -0.13 -6.40 16 22 H 0.07 1.74 6.20 -52.48 -0.33 1.41 16 23 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 24 N -0.90 -23.66 10.16 55.49 0.56 -23.09 16 25 Si 0.90 20.52 29.59 -169.99 -5.03 15.49 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.06 1.03 7.32 -51.93 -0.38 0.65 16 30 H 0.06 1.27 7.72 -51.93 -0.40 0.87 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 33 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 34 H 0.10 1.21 7.90 -51.92 -0.41 0.80 16 35 H 0.10 1.20 7.73 -51.93 -0.40 0.80 16 36 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.02 5.89 -51.93 -0.31 0.71 16 42 H 0.08 1.80 7.20 -51.93 -0.37 1.43 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.48 7.02 -51.93 -0.36 0.12 16 45 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -31.48 373.43 -7.87 -39.35 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.54 Total: 0.73 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.34 Total: 7.29 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.16 Total: -55.98 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.51 Total: -1.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.48 -7.87 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.338 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds