Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.74782 * 2 1 4 4 C 1.53373 * 109.60865 * 120.42822 * 2 1 3 5 5 N 1.46958 * 108.63158 * 169.16783 * 4 2 1 6 6 C 1.34785 * 120.59249 * 124.79852 * 5 4 2 7 7 O 1.21282 * 119.99546 * 179.97438 * 6 5 4 8 8 C 1.50695 * 119.99858 * 359.97216 * 6 5 4 9 9 C 1.50699 * 109.46897 * 179.97438 * 8 6 5 10 10 C 1.35308 * 126.04551 * 99.71595 * 9 8 6 11 11 N 1.34944 * 107.76669 * 179.89243 * 10 9 8 12 12 C 1.46501 * 126.02400 * 180.15730 * 11 10 9 13 13 N 1.40077 * 107.95164 * 0.37169 * 11 10 9 14 14 C 1.30899 * 108.19761 * 359.76767 * 13 11 10 15 15 Cl 1.73606 * 125.91225 * 179.97438 * 14 13 11 16 16 C 1.46969 * 118.81672 * 304.77272 * 5 4 2 17 17 C 1.53370 * 108.62886 * 55.22614 * 16 5 4 18 18 H 1.09004 * 109.74675 * 190.74760 * 17 16 5 19 19 C 1.53005 * 109.60950 * 70.32757 * 17 16 5 20 20 N 1.46958 * 108.64152 * 310.57682 * 17 16 5 21 21 C 1.36932 * 120.59773 * 234.95666 * 20 17 16 22 22 H 1.07998 * 120.00294 * 150.99189 * 21 20 17 23 23 C 1.38807 * 119.99877 * 330.99479 * 21 20 17 24 24 N 1.31625 * 120.00274 * 343.11855 * 23 21 20 25 25 Si 1.86804 * 120.00308 * 163.12057 * 23 21 20 26 26 H 1.48496 * 109.46978 * 89.99694 * 25 23 21 27 27 H 1.48497 * 109.47221 * 210.00069 * 25 23 21 28 28 H 1.48501 * 109.46725 * 329.99947 * 25 23 21 29 29 H 1.08997 * 109.47223 * 181.86976 * 1 2 3 30 30 H 1.08999 * 109.47098 * 301.87143 * 1 2 3 31 31 H 1.09000 * 109.46907 * 61.86355 * 1 2 3 32 32 H 1.09001 * 109.60665 * 49.42560 * 4 2 1 33 33 H 1.09001 * 109.60996 * 288.91419 * 4 2 1 34 34 H 1.08998 * 109.47587 * 300.00492 * 8 6 5 35 35 H 1.09005 * 109.47132 * 60.00694 * 8 6 5 36 36 H 1.08003 * 126.11425 * 0.02562 * 10 9 8 37 37 H 1.09001 * 109.47368 * 270.27054 * 12 11 10 38 38 H 1.09004 * 109.47390 * 30.27690 * 12 11 10 39 39 H 1.09001 * 109.47094 * 150.27237 * 12 11 10 40 40 H 1.08996 * 109.60943 * 295.48743 * 16 5 4 41 41 H 1.08992 * 109.75023 * 175.05659 * 16 5 4 42 42 H 1.08997 * 109.46619 * 300.84726 * 19 17 16 43 43 H 1.08998 * 109.47286 * 60.84715 * 19 17 16 44 44 H 1.09002 * 109.47027 * 180.84987 * 19 17 16 45 45 H 0.96997 * 119.99969 * 176.04104 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0447 -0.7317 1.2458 5 7 3.4907 -0.9489 1.0988 6 6 4.3492 -0.5133 2.0422 7 8 5.5404 -0.6988 1.9101 8 6 3.8288 0.2041 3.2610 9 6 4.9835 0.5823 4.1524 10 6 5.5658 1.8014 4.2268 11 7 6.5568 1.7293 5.1400 12 6 7.4441 2.8254 5.5369 13 7 6.5907 0.4204 5.6379 14 6 5.6472 -0.2668 5.0455 15 17 5.2826 -1.9419 5.3195 16 6 3.9840 -1.6500 -0.0949 17 6 3.4692 -0.9183 -1.3406 18 1 3.6602 -1.5222 -2.2278 19 6 4.1801 0.4300 -1.4746 20 7 2.0232 -0.7011 -1.1938 21 6 1.1515 -1.1390 -2.1547 22 1 0.1428 -1.4139 -1.8839 23 6 1.5643 -1.2298 -3.4768 24 7 2.6502 -0.5996 -3.8720 25 14 0.5788 -2.2462 -4.6955 26 1 -0.4514 -1.3895 -5.3357 27 1 1.4878 -2.7892 -5.7366 28 1 -0.0836 -3.3681 -3.9827 29 1 -0.3633 -1.0271 0.0335 30 1 -0.3633 0.5426 0.8727 31 1 -0.3633 0.4846 -0.9062 32 1 1.5383 -1.6922 1.3411 33 1 1.8540 -0.1253 2.1312 34 1 3.2968 1.1043 2.9533 35 1 3.1492 -0.4513 3.8058 36 1 5.2860 2.6763 3.6587 37 1 8.3236 2.8322 4.8930 38 1 6.9157 3.7738 5.4403 39 1 7.7533 2.6856 6.5727 40 1 3.6157 -2.6759 -0.0950 41 1 5.0740 -1.6527 -0.0964 42 1 3.9926 1.0296 -0.5839 43 1 5.2522 0.2663 -1.5834 44 1 3.8017 0.9546 -2.3520 45 1 2.9708 -0.7089 -4.7810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880454652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = 73.409599 kcal Electronic energy + Delta-G solvation = -28424.252330 eV Core-core repulsion = 24505.809077 eV Total energy + Delta-G solvation = -3918.443253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46034 -39.54102 -37.25568 -36.74494 -33.95353 -33.69260 -32.73885 -31.95119 -31.13536 -28.59954 -27.88935 -26.48937 -26.03046 -24.82220 -23.56248 -21.40406 -21.20065 -20.61237 -19.49453 -18.39045 -17.06146 -16.89025 -16.04046 -15.64422 -15.31952 -15.12878 -15.00071 -14.92449 -14.03214 -13.85726 -13.64407 -13.53444 -13.39094 -13.23190 -12.89741 -12.77610 -12.52759 -11.95250 -11.82785 -11.71653 -11.67488 -11.54402 -11.49140 -11.14791 -11.00561 -10.74511 -10.63056 -10.58535 -10.55069 -10.12210 -10.03594 -9.69645 -9.61771 -9.40305 -9.22999 -8.52568 -8.47254 -8.06146 -6.64598 -5.78675 -3.26455 1.43041 1.61932 2.40598 2.75207 3.13812 3.35830 3.44263 3.45173 3.63663 4.31105 4.46831 4.60640 4.85581 4.93090 5.05966 5.09781 5.12506 5.22729 5.35482 5.43566 5.55370 5.67839 5.69786 5.84641 5.91297 6.05446 6.13795 6.17107 6.27046 6.31747 6.41217 6.53787 6.66232 6.72453 6.82007 6.92463 6.93536 7.05188 7.11769 7.31867 7.61181 7.67562 7.81641 8.04810 8.41625 8.72657 9.18263 9.80413 10.37211 11.25922 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.002936 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.782898 B = 9533.172751 C = 9781.523737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.154 3.846 3 H 0.030 0.970 4 C 0.093 3.907 5 N -0.596 5.596 6 C 0.511 3.489 7 O -0.545 6.545 8 C -0.064 4.064 9 C -0.197 4.197 10 C 0.076 3.924 11 N -0.366 5.366 12 C 0.104 3.896 13 N -0.286 5.286 14 C 0.143 3.857 15 Cl 0.005 6.995 16 C 0.094 3.906 17 C 0.179 3.821 18 H 0.104 0.896 19 C -0.137 4.137 20 N -0.581 5.581 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.895 5.895 25 Si 0.897 3.103 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.182 0.818 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.021 0.979 43 H 0.027 0.973 44 H 0.074 0.926 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 6.269 17.688 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.048 0.952 4 C -0.032 4.032 5 N -0.328 5.328 6 C 0.298 3.702 7 O -0.423 6.423 8 C -0.105 4.105 9 C -0.209 4.209 10 C -0.069 4.069 11 N -0.149 5.149 12 C -0.037 4.037 13 N -0.112 5.112 14 C -0.048 4.048 15 Cl 0.033 6.967 16 C -0.029 4.029 17 C 0.072 3.928 18 H 0.122 0.878 19 C -0.196 4.196 20 N -0.304 5.304 21 C -0.380 4.380 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.539 5.539 25 Si 0.727 3.273 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.199 0.801 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.818 6.153 18.337 19.933 hybrid contribution -1.089 -0.579 -1.354 1.832 sum 3.730 5.574 16.983 18.259 Atomic orbital electron populations 1.21774 0.95320 1.01523 1.00779 1.20777 0.93164 0.93966 0.87463 0.95202 1.22436 0.80316 1.00850 0.99581 1.47984 1.06929 1.56748 1.21145 1.20411 0.86489 0.79443 0.83882 1.90656 1.15728 1.57678 1.78203 1.19965 0.95425 1.01704 0.93362 1.19267 1.04567 0.92540 1.04539 1.22294 0.90666 0.99762 0.94227 1.48135 1.27004 1.08018 1.31735 1.21922 0.93351 0.85734 1.02689 1.77306 1.21243 0.89428 1.23189 1.22432 0.96166 0.88368 0.97875 1.98386 1.92837 1.09772 1.95736 1.22423 0.99471 0.95390 0.85619 1.20723 0.82839 0.94902 0.94299 0.87826 1.21959 0.97580 0.99415 1.00645 1.44158 1.01967 1.64599 1.19644 1.19155 0.95719 1.36977 0.86196 0.91158 1.25038 0.98300 0.99465 0.96667 1.70041 1.24940 1.41579 1.17356 0.86397 0.79377 0.80317 0.81193 1.21544 1.21684 1.20595 0.92610 0.94092 0.91544 0.91640 0.91058 0.88150 0.88329 0.80083 0.90414 0.89046 0.89135 0.92538 0.90262 0.96007 0.95403 0.90714 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.94 37.16 0.29 -1.95 16 2 C 0.15 2.86 3.23 -67.48 -0.22 2.64 16 3 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 4 C 0.09 1.46 5.82 -3.60 -0.02 1.44 16 5 N -0.60 -10.53 2.59 -172.49 -0.45 -10.98 16 6 C 0.51 8.76 7.69 -10.98 -0.08 8.67 16 7 O -0.54 -11.25 15.44 5.56 0.09 -11.17 16 8 C -0.06 -0.82 4.38 -29.04 -0.13 -0.94 16 9 C -0.20 -2.66 4.60 -105.02 -0.48 -3.14 16 10 C 0.08 0.86 11.40 -17.23 -0.20 0.66 16 11 N -0.37 -4.15 4.01 -68.16 -0.27 -4.42 16 12 C 0.10 0.64 11.47 59.85 0.69 1.33 16 13 N -0.29 -4.16 12.58 32.95 0.41 -3.75 16 14 C 0.14 2.12 7.84 -17.30 -0.14 1.98 16 15 Cl 0.00 0.07 29.16 -51.86 -1.51 -1.44 16 16 C 0.09 1.89 5.96 -3.59 -0.02 1.87 16 17 C 0.18 4.05 2.35 -67.49 -0.16 3.89 16 18 H 0.10 2.66 6.04 -51.93 -0.31 2.35 16 19 C -0.14 -3.05 8.94 37.16 0.33 -2.72 16 20 N -0.58 -13.22 2.68 -157.02 -0.42 -13.65 16 21 C -0.25 -6.28 8.55 -15.06 -0.13 -6.41 16 22 H 0.07 1.72 6.26 -52.49 -0.33 1.39 16 23 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 24 N -0.90 -24.31 10.12 55.49 0.56 -23.75 16 25 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.05 0.93 7.47 -51.93 -0.39 0.54 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.22 7.58 -51.93 -0.39 0.83 16 32 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.07 0.87 5.91 -51.93 -0.31 0.56 16 34 H 0.10 1.06 7.72 -51.93 -0.40 0.66 16 35 H 0.10 1.13 7.91 -51.93 -0.41 0.71 16 36 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.64 6.98 -51.93 -0.36 1.28 16 42 H 0.02 0.45 7.02 -51.93 -0.36 0.09 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 45 H 0.25 6.76 8.32 -40.82 -0.34 6.42 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -32.34 373.34 -7.88 -40.22 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.54 Total: 0.25 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.35 Total: 7.34 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.17 Total: -56.55 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.51 Total: -1.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.34 -7.88 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.628 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds