Wall clock time and date at job start Sat Apr 11 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.74782 * 2 1 4 4 C 1.53373 * 109.60865 * 120.42822 * 2 1 3 5 5 N 1.46958 * 108.63158 * 169.16783 * 4 2 1 6 6 C 1.34785 * 120.59249 * 124.79852 * 5 4 2 7 7 O 1.21282 * 119.99546 * 179.97438 * 6 5 4 8 8 C 1.50695 * 119.99858 * 359.97216 * 6 5 4 9 9 C 1.50699 * 109.46897 * 179.97438 * 8 6 5 10 10 C 1.35308 * 126.04551 * 99.71595 * 9 8 6 11 11 N 1.34944 * 107.76669 * 179.89243 * 10 9 8 12 12 C 1.46501 * 126.02400 * 180.15730 * 11 10 9 13 13 N 1.40077 * 107.95164 * 0.37169 * 11 10 9 14 14 C 1.30899 * 108.19761 * 359.76767 * 13 11 10 15 15 Cl 1.73606 * 125.91225 * 179.97438 * 14 13 11 16 16 C 1.46969 * 118.81672 * 304.77272 * 5 4 2 17 17 C 1.53370 * 108.62886 * 55.22614 * 16 5 4 18 18 H 1.09004 * 109.74675 * 190.74760 * 17 16 5 19 19 C 1.53005 * 109.60950 * 70.32757 * 17 16 5 20 20 N 1.46958 * 108.64152 * 310.57682 * 17 16 5 21 21 C 1.36932 * 120.59773 * 234.95666 * 20 17 16 22 22 H 1.07998 * 120.00294 * 150.99189 * 21 20 17 23 23 C 1.38807 * 119.99877 * 330.99479 * 21 20 17 24 24 N 1.31625 * 120.00274 * 343.11855 * 23 21 20 25 25 Si 1.86804 * 120.00308 * 163.12057 * 23 21 20 26 26 H 1.48496 * 109.46978 * 89.99694 * 25 23 21 27 27 H 1.48497 * 109.47221 * 210.00069 * 25 23 21 28 28 H 1.48501 * 109.46725 * 329.99947 * 25 23 21 29 29 H 1.08997 * 109.47223 * 181.86976 * 1 2 3 30 30 H 1.08999 * 109.47098 * 301.87143 * 1 2 3 31 31 H 1.09000 * 109.46907 * 61.86355 * 1 2 3 32 32 H 1.09001 * 109.60665 * 49.42560 * 4 2 1 33 33 H 1.09001 * 109.60996 * 288.91419 * 4 2 1 34 34 H 1.08998 * 109.47587 * 300.00492 * 8 6 5 35 35 H 1.09005 * 109.47132 * 60.00694 * 8 6 5 36 36 H 1.08003 * 126.11425 * 0.02562 * 10 9 8 37 37 H 1.09001 * 109.47368 * 270.27054 * 12 11 10 38 38 H 1.09004 * 109.47390 * 30.27690 * 12 11 10 39 39 H 1.09001 * 109.47094 * 150.27237 * 12 11 10 40 40 H 1.08996 * 109.60943 * 295.48743 * 16 5 4 41 41 H 1.08992 * 109.75023 * 175.05659 * 16 5 4 42 42 H 1.08997 * 109.46619 * 300.84726 * 19 17 16 43 43 H 1.08998 * 109.47286 * 60.84715 * 19 17 16 44 44 H 1.09002 * 109.47027 * 180.84987 * 19 17 16 45 45 H 0.96997 * 119.99969 * 176.04104 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0447 -0.7317 1.2458 5 7 3.4907 -0.9489 1.0988 6 6 4.3492 -0.5133 2.0422 7 8 5.5404 -0.6988 1.9101 8 6 3.8288 0.2041 3.2610 9 6 4.9835 0.5823 4.1524 10 6 5.5658 1.8014 4.2268 11 7 6.5568 1.7293 5.1400 12 6 7.4441 2.8254 5.5369 13 7 6.5907 0.4204 5.6379 14 6 5.6472 -0.2668 5.0455 15 17 5.2826 -1.9419 5.3195 16 6 3.9840 -1.6500 -0.0949 17 6 3.4692 -0.9183 -1.3406 18 1 3.6602 -1.5222 -2.2278 19 6 4.1801 0.4300 -1.4746 20 7 2.0232 -0.7011 -1.1938 21 6 1.1515 -1.1390 -2.1547 22 1 0.1428 -1.4139 -1.8839 23 6 1.5643 -1.2298 -3.4768 24 7 2.6502 -0.5996 -3.8720 25 14 0.5788 -2.2462 -4.6955 26 1 -0.4514 -1.3895 -5.3357 27 1 1.4878 -2.7892 -5.7366 28 1 -0.0836 -3.3681 -3.9827 29 1 -0.3633 -1.0271 0.0335 30 1 -0.3633 0.5426 0.8727 31 1 -0.3633 0.4846 -0.9062 32 1 1.5383 -1.6922 1.3411 33 1 1.8540 -0.1253 2.1312 34 1 3.2968 1.1043 2.9533 35 1 3.1492 -0.4513 3.8058 36 1 5.2860 2.6763 3.6587 37 1 8.3236 2.8322 4.8930 38 1 6.9157 3.7738 5.4403 39 1 7.7533 2.6856 6.5727 40 1 3.6157 -2.6759 -0.0950 41 1 5.0740 -1.6527 -0.0964 42 1 3.9926 1.0296 -0.5839 43 1 5.2522 0.2663 -1.5834 44 1 3.8017 0.9546 -2.3520 45 1 2.9708 -0.7089 -4.7810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880454652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:05 Heat of formation + Delta-G solvation = 53.705868 kcal Electronic energy + Delta-G solvation = -28425.106748 eV Core-core repulsion = 24505.809077 eV Total energy + Delta-G solvation = -3919.297671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36083 -40.94586 -38.79342 -37.75105 -35.56667 -34.63387 -34.16585 -33.27769 -32.60126 -29.75359 -29.42241 -27.75594 -27.24095 -26.18152 -25.26719 -22.60976 -22.26039 -21.83165 -20.93530 -19.89854 -18.27891 -17.93368 -17.63368 -16.85516 -16.68308 -16.44602 -16.23880 -15.97787 -15.72821 -15.34635 -14.91550 -14.84977 -14.47020 -14.26911 -14.15725 -13.95058 -13.56911 -13.47837 -13.26827 -12.96394 -12.85307 -12.77106 -12.72995 -12.57511 -12.50343 -12.36237 -12.27747 -12.20833 -11.94042 -11.69528 -11.53662 -11.44938 -11.29690 -10.68418 -10.41981 -10.27415 -9.59049 -9.42735 -8.47874 -7.72806 -5.21705 0.51834 0.75030 1.41744 1.49847 1.54006 1.60610 1.84631 1.98242 2.30223 2.59481 3.39068 3.56467 3.60792 3.81050 3.93539 4.16955 4.25273 4.34436 4.38533 4.44882 4.46087 4.55792 4.61182 4.69159 4.71089 4.71513 4.78240 4.79778 4.87861 4.96372 5.01007 5.02873 5.16303 5.18990 5.24927 5.43425 5.52036 5.64873 5.77945 5.82690 5.90832 5.99867 6.41292 6.50332 6.70792 7.25730 7.39694 7.96543 8.48509 9.28561 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.002936 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.782898 B = 9533.172751 C = 9781.523737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.146 3.854 3 H 0.024 0.976 4 C 0.100 3.900 5 N -0.600 5.600 6 C 0.509 3.491 7 O -0.584 6.584 8 C -0.053 4.053 9 C -0.224 4.224 10 C 0.088 3.912 11 N -0.362 5.362 12 C 0.092 3.908 13 N -0.322 5.322 14 C 0.123 3.877 15 Cl -0.003 7.003 16 C 0.108 3.892 17 C 0.182 3.818 18 H 0.066 0.934 19 C -0.118 4.118 20 N -0.596 5.596 21 C -0.245 4.245 22 H 0.077 0.923 23 C -0.049 4.049 24 N -0.923 5.923 25 Si 0.952 3.048 26 H -0.290 1.290 27 H -0.302 1.302 28 H -0.273 1.273 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.221 0.779 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.027 0.973 44 H 0.043 0.957 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 7.878 19.961 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.040 3.960 3 H 0.042 0.958 4 C -0.024 4.024 5 N -0.331 5.331 6 C 0.299 3.701 7 O -0.464 6.464 8 C -0.094 4.094 9 C -0.237 4.237 10 C -0.059 4.059 11 N -0.145 5.145 12 C -0.046 4.046 13 N -0.149 5.149 14 C -0.067 4.067 15 Cl 0.024 6.976 16 C -0.017 4.017 17 C 0.075 3.925 18 H 0.084 0.916 19 C -0.177 4.177 20 N -0.319 5.319 21 C -0.375 4.375 22 H 0.095 0.905 23 C -0.244 4.244 24 N -0.570 5.570 25 Si 0.782 3.218 26 H -0.217 1.217 27 H -0.229 1.229 28 H -0.198 1.198 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.237 0.763 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.480 7.768 20.665 22.350 hybrid contribution -0.615 -0.986 -1.986 2.300 sum 2.865 6.782 18.680 20.078 Atomic orbital electron populations 1.21700 0.93564 1.01748 1.01583 1.21051 0.94689 0.93510 0.86778 0.95802 1.22486 0.78732 1.01504 0.99664 1.48053 1.08040 1.56629 1.20414 1.21231 0.85816 0.78583 0.84512 1.90642 1.17636 1.59032 1.79114 1.19987 0.95646 1.02736 0.91014 1.19472 1.05683 0.93297 1.05200 1.22929 0.89439 1.00263 0.93311 1.48584 1.27148 1.07671 1.31075 1.22354 0.93522 0.85638 1.03130 1.77216 1.21909 0.91201 1.24530 1.22664 0.96899 0.88381 0.98801 1.98369 1.92889 1.10486 1.95828 1.21999 0.98619 0.95134 0.85965 1.20506 0.83447 0.94481 0.94089 0.91602 1.21731 0.97314 0.99166 0.99500 1.44372 1.01653 1.65334 1.20556 1.19456 0.96057 1.35425 0.86549 0.90527 1.25654 0.99418 1.01061 0.98296 1.70190 1.26543 1.43239 1.16984 0.85527 0.77889 0.79184 0.79234 1.21690 1.22880 1.19830 0.92890 0.89716 0.94067 0.91329 0.86328 0.84862 0.86567 0.76265 0.89824 0.85425 0.88603 0.92927 0.91444 0.94961 0.95401 0.93774 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 7.94 71.98 0.57 -3.27 16 2 C 0.15 5.07 3.23 45.03 0.15 5.21 16 3 H 0.02 0.88 7.40 -2.39 -0.02 0.86 16 4 C 0.10 2.77 5.82 86.42 0.50 3.27 16 5 N -0.60 -19.95 2.59 -818.02 -2.12 -22.08 16 6 C 0.51 16.28 7.69 87.65 0.67 16.95 16 7 O -0.58 -23.59 15.44 -3.03 -0.05 -23.63 16 8 C -0.05 -1.17 4.38 29.10 0.13 -1.04 16 9 C -0.22 -5.43 4.60 -20.12 -0.09 -5.52 16 10 C 0.09 1.65 11.40 83.54 0.95 2.61 16 11 N -0.36 -7.25 4.01 -369.56 -1.48 -8.74 16 12 C 0.09 0.86 11.47 127.77 1.47 2.33 16 13 N -0.32 -8.98 12.58 -49.68 -0.62 -9.61 16 14 C 0.12 3.47 7.84 85.25 0.67 4.14 16 15 Cl 0.00 -0.09 29.16 -2.72 -0.08 -0.17 16 16 C 0.11 4.32 5.96 86.41 0.52 4.83 16 17 C 0.18 8.36 2.35 45.03 0.11 8.47 16 18 H 0.07 3.54 6.04 -2.39 -0.01 3.52 16 19 C -0.12 -5.33 8.94 71.98 0.64 -4.69 16 20 N -0.60 -26.89 2.68 -650.70 -1.75 -28.64 16 21 C -0.24 -12.23 8.55 84.03 0.72 -11.51 16 22 H 0.08 3.68 6.26 -2.91 -0.02 3.66 16 23 C -0.05 -2.58 4.91 84.86 0.42 -2.16 16 24 N -0.92 -51.90 10.12 21.65 0.22 -51.68 16 25 Si 0.95 43.46 29.59 68.60 2.03 45.49 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 H 0.05 1.61 7.47 -2.39 -0.02 1.59 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.43 7.58 -2.39 -0.02 1.42 16 32 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 33 H 0.12 2.20 5.91 -2.39 -0.01 2.19 16 34 H 0.13 2.04 7.72 -2.39 -0.02 2.02 16 35 H 0.12 2.15 7.91 -2.38 -0.02 2.13 16 36 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.85 6.98 -2.39 -0.02 2.84 16 42 H 0.03 1.34 7.02 -2.39 -0.02 1.32 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 2.25 7.15 -2.39 -0.02 2.23 16 45 H 0.24 13.60 8.32 -92.71 -0.77 12.82 16 Total: -1.00 -73.77 373.34 4.56 -69.21 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.00 Total: 10.23 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 7.41 Total: 19.61 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -5.76 Total: -120.74 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -73.77 4.56 -69.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880454652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.916 kcal (2) G-P(sol) polarization free energy of solvation -73.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds