Wall clock time and date at job start Sat Apr 11 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.60732 * 2 1 4 4 C 1.52932 * 109.82804 * 239.68808 * 2 1 3 5 5 N 1.46965 * 108.86953 * 190.88301 * 4 2 1 6 6 C 1.34780 * 120.58956 * 235.20759 * 5 4 2 7 7 O 1.21589 * 119.99323 * 185.03275 * 6 5 4 8 8 N 1.34776 * 119.99946 * 5.31212 * 6 5 4 9 9 C 1.40088 * 119.99655 * 174.66660 * 8 6 5 10 10 C 1.38765 * 120.44720 * 146.71468 * 9 8 6 11 11 N 1.31876 * 120.74954 * 180.02562 * 10 9 8 12 12 C 1.31994 * 121.78650 * 0.02562 * 11 10 9 13 13 F 1.35105 * 119.59347 * 180.02562 * 12 11 10 14 14 C 1.38762 * 120.81848 * 0.02562 * 12 11 10 15 15 F 1.35095 * 120.41842 * 179.97438 * 14 12 11 16 16 C 1.38641 * 119.16220 * 359.68216 * 14 12 11 17 17 C 1.46961 * 118.81383 * 54.93440 * 5 4 2 18 18 C 1.53369 * 108.63404 * 305.02516 * 17 5 4 19 19 H 1.08996 * 109.61172 * 289.67790 * 18 17 5 20 20 C 1.53008 * 109.60497 * 169.16581 * 18 17 5 21 21 N 1.46962 * 109.60692 * 120.34485 * 2 1 3 22 22 C 1.36937 * 120.59785 * 355.15792 * 21 2 1 23 23 H 1.07998 * 119.99572 * 56.63773 * 22 21 2 24 24 C 1.38805 * 120.00169 * 236.62918 * 22 21 2 25 25 N 1.31616 * 120.00081 * 15.09475 * 24 22 21 26 26 Si 1.86807 * 119.99827 * 195.09402 * 24 22 21 27 27 H 1.48493 * 109.47473 * 60.00333 * 26 24 22 28 28 H 1.48504 * 109.47054 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46924 * 300.00095 * 26 24 22 30 30 H 1.09002 * 109.47270 * 304.06378 * 1 2 3 31 31 H 1.08996 * 109.47220 * 64.07171 * 1 2 3 32 32 H 1.09000 * 109.47198 * 184.06692 * 1 2 3 33 33 H 1.08999 * 109.52322 * 71.04184 * 4 2 1 34 34 H 1.09006 * 109.45909 * 310.67900 * 4 2 1 35 35 H 0.96999 * 120.00427 * 354.66784 * 8 6 5 36 36 H 1.08006 * 119.62272 * 359.97438 * 10 9 8 37 37 H 1.08005 * 120.80817 * 180.31666 * 16 14 12 38 38 H 1.09007 * 109.60830 * 64.77154 * 17 5 4 39 39 H 1.09001 * 109.61236 * 185.10764 * 17 5 4 40 40 H 1.09002 * 109.47078 * 51.48582 * 20 18 17 41 41 H 1.09007 * 109.46514 * 171.48178 * 20 18 17 42 42 H 1.08994 * 109.47322 * 291.48018 * 20 18 17 43 43 H 0.97005 * 119.99874 * 184.95081 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0487 -0.7261 -1.2420 5 7 3.4947 -0.9446 -1.0956 6 6 4.3534 -0.5066 -2.0375 7 8 5.5368 -0.7724 -1.9520 8 7 3.9012 0.2307 -3.0711 9 6 4.8062 0.7798 -3.9886 10 6 4.4564 0.9187 -5.3242 11 7 5.3038 1.4344 -6.1931 12 6 6.5090 1.8361 -5.8346 13 9 7.3414 2.3585 -6.7616 14 6 6.9315 1.7286 -4.5172 15 9 8.1669 2.1418 -4.1592 16 6 6.0676 1.1973 -3.5719 17 6 3.9879 -1.6439 0.0992 18 6 3.4696 -0.9129 1.3438 19 1 3.9735 0.0489 1.4396 20 6 3.7377 -1.7631 2.5874 21 7 2.0232 -0.6994 1.1947 22 6 1.1507 -1.1444 2.1518 23 1 0.3502 -1.8172 1.8817 24 6 1.2952 -0.7308 3.4689 25 7 2.0624 0.2997 3.7547 26 14 0.4006 -1.6368 4.8358 27 1 0.8354 -3.0565 4.8559 28 1 0.7184 -1.0028 6.1405 29 1 -1.0638 -1.5709 4.5976 30 1 -0.3634 0.5756 0.8513 31 1 -0.3633 0.4493 -0.9242 32 1 -0.3633 -1.0251 0.0729 33 1 1.8583 -0.1174 -2.1259 34 1 1.5417 -1.6861 -1.3397 35 1 2.9491 0.3812 -3.1797 36 1 3.4792 0.6001 -5.6560 37 1 6.3671 1.1061 -2.5382 38 1 3.6221 -2.6708 0.0991 39 1 5.0779 -1.6440 0.0992 40 1 4.7864 -2.0596 2.6057 41 1 3.5087 -1.1821 3.4809 42 1 3.1088 -2.6530 2.5617 43 1 2.2208 0.5446 4.6798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934384407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:20 Heat of formation + Delta-G solvation = -29.790488 kcal Electronic energy + Delta-G solvation = -30173.714617 eV Core-core repulsion = 25698.999592 eV Total energy + Delta-G solvation = -4474.715025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.70362 -48.79984 -41.16406 -39.74341 -37.72576 -35.29981 -34.49396 -32.96152 -32.30129 -31.46094 -29.79625 -27.88011 -26.37822 -25.83977 -24.66000 -24.08988 -23.19414 -20.65832 -20.55748 -19.54270 -18.93598 -18.42988 -18.11856 -17.42198 -16.83020 -16.43180 -16.15789 -15.36145 -15.28154 -15.26064 -15.12707 -14.84019 -14.56552 -14.28704 -14.17103 -13.84625 -13.55979 -13.38601 -13.12383 -13.00838 -12.79709 -12.23566 -11.77035 -11.56835 -11.53273 -11.14978 -11.05576 -10.96165 -10.70132 -10.61345 -10.47300 -10.45798 -10.20994 -10.08490 -10.01664 -9.77504 -9.64678 -8.71366 -8.43984 -8.14577 -6.50298 -5.85700 -3.77390 0.36389 0.63133 2.35417 2.89020 3.03884 3.23744 3.28827 3.31063 3.33113 3.65762 3.76390 4.16215 4.30130 4.36305 4.59297 4.90479 5.02008 5.14251 5.30372 5.42165 5.47665 5.60428 5.68295 5.79885 5.93580 6.01025 6.12216 6.14571 6.22354 6.32464 6.34633 6.41221 6.63700 6.68103 6.77893 6.86571 6.97024 7.05776 7.12322 7.34340 7.60150 7.72166 7.81905 8.43498 8.47745 9.04257 9.54065 10.32021 11.02902 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.025073 B = 0.002644 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.476753 B =10586.486817 C =11110.919139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.029 0.971 4 C 0.095 3.905 5 N -0.603 5.603 6 C 0.702 3.298 7 O -0.581 6.581 8 N -0.682 5.682 9 C 0.155 3.845 10 C 0.096 3.904 11 N -0.463 5.463 12 C 0.252 3.748 13 F -0.105 7.105 14 C 0.058 3.942 15 F -0.116 7.116 16 C -0.091 4.091 17 C 0.109 3.891 18 C 0.183 3.817 19 H 0.033 0.967 20 C -0.142 4.142 21 N -0.574 5.574 22 C -0.268 4.268 23 H 0.053 0.947 24 C 0.040 3.960 25 N -0.873 5.873 26 Si 0.887 3.113 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.278 1.278 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 0.935 -13.979 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.030 4.030 5 N -0.336 5.336 6 C 0.404 3.596 7 O -0.459 6.459 8 N -0.333 5.333 9 C 0.055 3.945 10 C -0.065 4.065 11 N -0.176 5.176 12 C 0.096 3.904 13 F -0.084 7.084 14 C 0.034 3.966 15 F -0.094 7.094 16 C -0.120 4.120 17 C -0.015 4.015 18 C 0.076 3.924 19 H 0.050 0.950 20 C -0.200 4.200 21 N -0.299 5.299 22 C -0.398 4.398 23 H 0.070 0.930 24 C -0.163 4.163 25 N -0.512 5.512 26 Si 0.714 3.286 27 H -0.204 1.204 28 H -0.215 1.215 29 H -0.204 1.204 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.254 0.746 36 H 0.195 0.805 37 H 0.190 0.810 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.542 0.953 -14.509 14.761 hybrid contribution -0.273 -0.228 1.469 1.512 sum 2.269 0.725 -13.040 13.256 Atomic orbital electron populations 1.21647 0.94725 1.02097 1.00050 1.20777 0.93688 0.93752 0.86966 0.95317 1.22396 0.79894 1.01111 0.99585 1.47303 1.06477 1.58953 1.20895 1.15852 0.85371 0.78809 0.79577 1.90914 1.14789 1.62851 1.77357 1.42852 1.09863 1.53563 1.26986 1.18335 0.90921 0.95591 0.89682 1.22364 0.99561 0.98282 0.86313 1.67048 1.01417 1.11368 1.37757 1.18021 0.88064 1.00630 0.83720 1.91649 1.68162 1.83420 1.65152 1.18194 0.83080 1.03201 0.92115 1.91573 1.38033 1.87741 1.92083 1.21714 0.92721 0.95623 1.01926 1.22547 0.99427 0.95555 0.83924 1.20652 0.85523 0.95447 0.90799 0.94960 1.21947 0.97140 1.00606 1.00291 1.43904 1.00941 1.64966 1.20062 1.18591 1.10981 1.22664 0.87532 0.92972 1.25640 0.97087 0.94266 0.99347 1.70085 1.39170 1.23509 1.18410 0.86673 0.80224 0.80031 0.81625 1.20366 1.21477 1.20371 0.91494 0.94501 0.92461 0.92135 0.91022 0.74584 0.80523 0.81030 0.91824 0.90001 0.95663 0.89109 0.92756 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.22 37.16 0.31 -1.75 16 2 C 0.16 2.77 3.63 -67.71 -0.25 2.52 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.09 1.32 5.89 -3.82 -0.02 1.30 16 5 N -0.60 -9.51 2.95 -178.48 -0.53 -10.04 16 6 C 0.70 10.72 8.06 -86.92 -0.70 10.02 16 7 O -0.58 -10.55 13.50 5.29 0.07 -10.48 16 8 N -0.68 -7.67 5.27 -14.12 -0.07 -7.74 16 9 C 0.15 1.73 6.30 -83.51 -0.53 1.20 16 10 C 0.10 0.90 11.11 -17.34 -0.19 0.71 16 11 N -0.46 -5.39 10.36 -13.40 -0.14 -5.53 16 12 C 0.25 3.12 8.41 -17.29 -0.15 2.97 16 13 F -0.10 -1.33 17.21 2.25 0.04 -1.29 16 14 C 0.06 0.72 7.35 -39.24 -0.29 0.43 16 15 F -0.12 -1.51 17.19 2.25 0.04 -1.47 16 16 C -0.09 -1.16 8.75 -39.06 -0.34 -1.50 16 17 C 0.11 1.94 5.89 -3.60 -0.02 1.92 16 18 C 0.18 3.79 3.21 -67.48 -0.22 3.57 16 19 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.14 -2.95 7.88 37.16 0.29 -2.66 16 21 N -0.57 -12.35 2.72 -157.28 -0.43 -12.78 16 22 C -0.27 -6.32 6.55 -15.06 -0.10 -6.42 16 23 H 0.05 1.25 7.14 -52.49 -0.37 0.87 16 24 C 0.04 0.97 3.59 -17.43 -0.06 0.91 16 25 N -0.87 -22.81 11.53 55.49 0.64 -22.17 16 26 Si 0.89 19.44 29.58 -169.99 -5.03 14.41 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 30 H 0.07 1.25 7.90 -51.93 -0.41 0.84 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.94 7.27 -51.93 -0.38 0.56 16 33 H 0.06 0.61 5.55 -51.93 -0.29 0.32 16 34 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 35 H 0.41 3.45 6.27 -40.82 -0.26 3.20 16 36 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.17 2.43 6.53 -52.48 -0.34 2.09 16 38 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 40 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 41 H 0.09 2.14 5.07 -51.92 -0.26 1.88 16 42 H 0.05 1.14 7.50 -51.93 -0.39 0.75 16 43 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -28.15 351.87 -7.53 -35.67 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.16 Total: 2.87 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -2.26 Total: 13.24 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.53 Total: -58.26 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.15 -7.53 -35.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934384407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.883 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds