Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47106 * 2 1 4 4 N 1.39927 * 125.74380 * 89.97933 * 3 2 1 5 5 C 1.30416 * 108.95965 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.97962 * 179.97438 * 5 4 3 7 7 C 1.41347 * 108.04773 * 0.02562 * 5 4 3 8 8 C 1.47291 * 126.43900 * 179.97438 * 7 5 4 9 9 O 1.21627 * 120.00116 * 89.99743 * 8 7 5 10 10 N 1.34780 * 120.00371 * 269.99899 * 8 7 5 11 11 C 1.47020 * 125.64983 * 179.97438 * 10 8 7 12 12 C 1.54324 * 107.39983 * 181.10309 * 11 10 8 13 13 H 1.08999 * 110.72009 * 263.75165 * 12 11 10 14 14 C 1.53005 * 110.72001 * 140.65611 * 12 11 10 15 15 C 1.55159 * 102.94134 * 22.11770 * 12 11 10 16 16 H 1.09001 * 110.99961 * 206.38541 * 15 12 11 17 17 N 1.46492 * 111.00800 * 82.57261 * 15 12 11 18 18 C 1.36935 * 120.00303 * 154.99724 * 17 15 12 19 19 H 1.08000 * 119.99817 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00043 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00272 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47075 * 89.99779 * 22 20 18 24 24 H 1.48499 * 109.47371 * 209.99700 * 22 20 18 25 25 H 1.48494 * 109.47331 * 329.99791 * 22 20 18 26 26 C 1.47743 * 125.81887 * 359.90544 * 10 8 7 27 27 C 1.34350 * 125.75344 * 270.29315 * 3 2 1 28 28 Cl 1.73597 * 126.31814 * 359.95794 * 27 3 2 29 29 H 1.08999 * 109.46953 * 299.99661 * 1 2 3 30 30 H 1.08997 * 109.47294 * 59.99750 * 1 2 3 31 31 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46953 * 240.00339 * 2 1 3 33 33 H 1.08995 * 109.46848 * 120.00534 * 2 1 3 34 34 H 1.08997 * 109.47207 * 269.99881 * 6 5 4 35 35 H 1.08996 * 109.46925 * 30.00317 * 6 5 4 36 36 H 1.08995 * 109.47123 * 150.00326 * 6 5 4 37 37 H 1.09002 * 109.88367 * 61.60808 * 11 10 8 38 38 H 1.09000 * 109.88319 * 300.59426 * 11 10 8 39 39 H 1.08998 * 109.46692 * 61.45351 * 14 12 11 40 40 H 1.08997 * 109.47070 * 181.45014 * 14 12 11 41 41 H 1.09002 * 109.47183 * 301.45398 * 14 12 11 42 42 H 0.97009 * 119.99789 * 335.00183 * 17 15 12 43 43 H 0.96996 * 120.00274 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.29227 * 37.02448 * 26 10 8 45 45 H 1.08996 * 110.53057 * 274.75660 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2904 2.1520 1.1357 5 6 2.7062 3.3293 0.7591 6 6 3.1051 4.4608 1.6710 7 6 2.7162 3.3588 -0.6540 8 6 3.1165 4.4943 -1.5025 9 8 4.2750 4.6127 -1.8532 10 7 2.1989 5.4022 -1.8904 11 6 2.4602 6.5784 -2.7328 12 6 1.1265 7.3386 -2.8905 13 1 0.6310 7.0593 -3.8203 14 6 1.3551 8.8504 -2.8342 15 6 0.3055 6.8577 -1.6649 16 1 -0.7646 6.9205 -1.8626 17 7 0.6602 7.6181 -0.4640 18 6 -0.2397 7.7381 0.5611 19 1 -1.2108 7.2718 0.4846 20 6 0.0963 8.4591 1.6987 21 7 1.2800 9.0270 1.7923 22 14 -1.1310 8.6221 3.0975 23 1 -0.9431 7.5018 4.0540 24 1 -0.9140 9.9131 3.7986 25 1 -2.5115 8.5810 2.5521 26 6 0.7630 5.3830 -1.5431 27 6 2.2747 2.1231 -1.0903 28 17 2.0896 1.6218 -2.7419 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2323 5.0757 1.8903 35 1 3.5063 4.0549 2.5996 36 1 3.8654 5.0703 1.1825 37 1 2.8238 6.2611 -3.7102 38 1 3.1987 7.2210 -2.2534 39 1 2.0059 9.1502 -3.6556 40 1 0.3988 9.3660 -2.9215 41 1 1.8237 9.1120 -1.8854 42 1 1.5326 8.0368 -0.3951 43 1 1.5149 9.5305 2.5874 44 1 0.6258 5.0263 -0.5222 45 1 0.2092 4.7553 -2.2411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939797955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = 49.445773 kcal Electronic energy + Delta-G solvation = -28733.637877 eV Core-core repulsion = 24814.155474 eV Total energy + Delta-G solvation = -3919.482402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44743 -39.40742 -37.36090 -37.08968 -34.99028 -33.81667 -32.33333 -31.34606 -30.51822 -29.98941 -27.74976 -27.63487 -26.13738 -23.99958 -23.68836 -22.31148 -21.34230 -20.29178 -19.20544 -19.00517 -17.62056 -17.14551 -16.46482 -15.84057 -15.51433 -15.21755 -14.76365 -14.54815 -14.36917 -13.95417 -13.61483 -13.33012 -13.01999 -13.00284 -12.88032 -12.70492 -12.45081 -12.36383 -12.19172 -12.10208 -11.93589 -11.77087 -11.65360 -11.55125 -11.47721 -11.09977 -10.92321 -10.71834 -10.67713 -10.43462 -10.26425 -9.95466 -9.66871 -9.58943 -9.21591 -9.03108 -8.57117 -8.16822 -7.01714 -5.81967 -3.11389 1.23640 1.44520 2.39737 2.47109 2.90593 3.39896 3.45868 3.47350 3.51936 4.22607 4.53620 4.65208 4.69498 4.85661 4.91494 5.03204 5.21044 5.23186 5.33937 5.35820 5.44897 5.47679 5.59160 5.65745 5.78877 5.81527 5.98135 5.99105 6.02251 6.03923 6.15495 6.23039 6.26995 6.38407 6.40922 6.48233 6.56587 6.65690 6.67706 6.82453 6.97913 7.51327 7.65209 7.95815 8.35543 8.56003 9.47838 10.02929 10.38411 11.39733 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.004560 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.537543 B = 6139.239276 C = 7469.191405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.354 5.354 4 N -0.275 5.275 5 C 0.132 3.868 6 C -0.079 4.079 7 C -0.240 4.240 8 C 0.612 3.388 9 O -0.544 6.544 10 N -0.591 5.591 11 C 0.117 3.883 12 C -0.115 4.115 13 H 0.078 0.922 14 C -0.131 4.131 15 C 0.172 3.828 16 H 0.073 0.927 17 N -0.706 5.706 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.006 4.006 21 N -0.927 5.927 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.074 3.926 27 C 0.154 3.846 28 Cl 0.002 6.998 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.077 0.923 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -15.365 -8.200 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.137 5.137 4 N -0.098 5.098 5 C -0.034 4.034 6 C -0.138 4.138 7 C -0.256 4.256 8 C 0.398 3.602 9 O -0.422 6.422 10 N -0.323 5.323 11 C -0.006 4.006 12 C -0.135 4.135 13 H 0.096 0.904 14 C -0.189 4.189 15 C 0.060 3.940 16 H 0.091 0.909 17 N -0.347 5.347 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.733 3.267 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.052 4.052 27 C -0.003 4.003 28 Cl 0.030 6.970 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.223 0.777 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.674 -16.269 -7.385 17.880 hybrid contribution -0.344 0.378 -0.018 0.512 sum -1.018 -15.891 -7.403 17.560 Atomic orbital electron populations 1.22196 0.93612 1.03323 1.03781 1.21822 0.95826 0.77187 1.04883 1.48534 1.50805 1.12382 1.01985 1.77286 1.23504 1.04221 1.04794 1.22402 0.95360 0.93962 0.91671 1.20357 1.03576 0.92900 0.96969 1.19727 1.17187 0.94435 0.94205 1.16656 0.84075 0.80611 0.78850 1.90762 1.18232 1.76247 1.56996 1.48297 1.09589 1.24499 1.49873 1.21960 0.98005 0.86664 0.93948 1.22535 0.95328 0.96316 0.99284 0.90396 1.21601 1.01669 0.93558 1.02085 1.21334 0.96909 0.88438 0.87369 0.90888 1.42342 1.17656 1.60133 1.14543 1.19199 0.95893 1.27452 0.94948 0.91198 1.24693 0.96804 1.00425 0.98310 1.69653 1.19964 1.38730 1.29069 0.86274 0.80546 0.77126 0.82706 1.21717 1.21818 1.20818 1.23415 0.79802 1.01563 1.00431 1.21809 1.03085 0.92121 0.83247 1.98407 1.96034 1.91053 1.11468 0.91090 0.91779 0.90191 0.88791 0.87907 0.88259 0.90507 0.89936 0.92318 0.91293 0.93802 0.92385 0.90914 0.77704 0.93413 0.90413 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.12 1.12 6.97 -4.04 -0.03 1.09 16 3 N -0.35 -4.87 3.58 -57.57 -0.21 -5.07 16 4 N -0.28 -4.45 12.49 33.90 0.42 -4.03 16 5 C 0.13 2.30 7.26 -82.01 -0.60 1.70 16 6 C -0.08 -1.34 10.28 36.00 0.37 -0.97 16 7 C -0.24 -4.20 4.80 -105.02 -0.50 -4.70 16 8 C 0.61 11.73 7.23 -12.58 -0.09 11.64 16 9 O -0.54 -11.91 17.44 5.25 0.09 -11.82 16 10 N -0.59 -10.52 3.34 -171.59 -0.57 -11.09 16 11 C 0.12 1.93 6.45 -3.06 -0.02 1.91 16 12 C -0.11 -1.75 3.41 -88.78 -0.30 -2.05 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.13 -2.04 8.81 37.16 0.33 -1.72 16 15 C 0.17 3.10 3.47 -65.80 -0.23 2.87 16 16 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 17 N -0.71 -15.95 4.57 -51.37 -0.23 -16.18 16 18 C -0.24 -6.20 9.96 -15.06 -0.15 -6.35 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.93 -26.30 13.06 55.49 0.72 -25.57 16 22 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.07 1.27 6.39 -2.36 -0.02 1.25 16 27 C 0.15 2.30 7.54 -16.43 -0.12 2.18 16 28 Cl 0.00 0.03 28.57 -51.86 -1.48 -1.45 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.68 7.78 -51.93 -0.40 0.28 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.24 7.82 -51.93 -0.41 0.83 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.35 6.36 -51.93 -0.33 1.02 16 42 H 0.39 9.53 6.34 -40.82 -0.26 9.27 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -30.89 390.01 -8.31 -39.20 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.83 Total: 8.17 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.08 Total: 5.61 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.13 Total: -61.95 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.48 Total: -1.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.89 -8.31 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939797955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.649 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds