Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47106 * 2 1 4 4 N 1.39927 * 125.74380 * 89.97933 * 3 2 1 5 5 C 1.30416 * 108.95965 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.97962 * 179.97438 * 5 4 3 7 7 C 1.41347 * 108.04773 * 0.02562 * 5 4 3 8 8 C 1.47291 * 126.43900 * 179.97438 * 7 5 4 9 9 O 1.21627 * 120.00116 * 89.99743 * 8 7 5 10 10 N 1.34780 * 120.00371 * 269.99899 * 8 7 5 11 11 C 1.47020 * 125.64983 * 179.97438 * 10 8 7 12 12 C 1.54324 * 107.39983 * 181.10309 * 11 10 8 13 13 H 1.08999 * 110.72009 * 263.75165 * 12 11 10 14 14 C 1.53005 * 110.72001 * 140.65611 * 12 11 10 15 15 C 1.55159 * 102.94134 * 22.11770 * 12 11 10 16 16 H 1.09001 * 110.99961 * 206.38541 * 15 12 11 17 17 N 1.46492 * 111.00800 * 82.57261 * 15 12 11 18 18 C 1.36935 * 120.00303 * 154.99724 * 17 15 12 19 19 H 1.08000 * 119.99817 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00043 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00272 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47075 * 89.99779 * 22 20 18 24 24 H 1.48499 * 109.47371 * 209.99700 * 22 20 18 25 25 H 1.48494 * 109.47331 * 329.99791 * 22 20 18 26 26 C 1.47743 * 125.81887 * 359.90544 * 10 8 7 27 27 C 1.34350 * 125.75344 * 270.29315 * 3 2 1 28 28 Cl 1.73597 * 126.31814 * 359.95794 * 27 3 2 29 29 H 1.08999 * 109.46953 * 299.99661 * 1 2 3 30 30 H 1.08997 * 109.47294 * 59.99750 * 1 2 3 31 31 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46953 * 240.00339 * 2 1 3 33 33 H 1.08995 * 109.46848 * 120.00534 * 2 1 3 34 34 H 1.08997 * 109.47207 * 269.99881 * 6 5 4 35 35 H 1.08996 * 109.46925 * 30.00317 * 6 5 4 36 36 H 1.08995 * 109.47123 * 150.00326 * 6 5 4 37 37 H 1.09002 * 109.88367 * 61.60808 * 11 10 8 38 38 H 1.09000 * 109.88319 * 300.59426 * 11 10 8 39 39 H 1.08998 * 109.46692 * 61.45351 * 14 12 11 40 40 H 1.08997 * 109.47070 * 181.45014 * 14 12 11 41 41 H 1.09002 * 109.47183 * 301.45398 * 14 12 11 42 42 H 0.97009 * 119.99789 * 335.00183 * 17 15 12 43 43 H 0.96996 * 120.00274 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.29227 * 37.02448 * 26 10 8 45 45 H 1.08996 * 110.53057 * 274.75660 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2904 2.1520 1.1357 5 6 2.7062 3.3293 0.7591 6 6 3.1051 4.4608 1.6710 7 6 2.7162 3.3588 -0.6540 8 6 3.1165 4.4943 -1.5025 9 8 4.2750 4.6127 -1.8532 10 7 2.1989 5.4022 -1.8904 11 6 2.4602 6.5784 -2.7328 12 6 1.1265 7.3386 -2.8905 13 1 0.6310 7.0593 -3.8203 14 6 1.3551 8.8504 -2.8342 15 6 0.3055 6.8577 -1.6649 16 1 -0.7646 6.9205 -1.8626 17 7 0.6602 7.6181 -0.4640 18 6 -0.2397 7.7381 0.5611 19 1 -1.2108 7.2718 0.4846 20 6 0.0963 8.4591 1.6987 21 7 1.2800 9.0270 1.7923 22 14 -1.1310 8.6221 3.0975 23 1 -0.9431 7.5018 4.0540 24 1 -0.9140 9.9131 3.7986 25 1 -2.5115 8.5810 2.5521 26 6 0.7630 5.3830 -1.5431 27 6 2.2747 2.1231 -1.0903 28 17 2.0896 1.6218 -2.7419 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2323 5.0757 1.8903 35 1 3.5063 4.0549 2.5996 36 1 3.8654 5.0703 1.1825 37 1 2.8238 6.2611 -3.7102 38 1 3.1987 7.2210 -2.2534 39 1 2.0059 9.1502 -3.6556 40 1 0.3988 9.3660 -2.9215 41 1 1.8237 9.1120 -1.8854 42 1 1.5326 8.0368 -0.3951 43 1 1.5149 9.5305 2.5874 44 1 0.6258 5.0263 -0.5222 45 1 0.2092 4.7553 -2.2411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939797955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = 30.669363 kcal Electronic energy + Delta-G solvation = -28734.452083 eV Core-core repulsion = 24814.155474 eV Total energy + Delta-G solvation = -3920.296609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.65698 -40.83099 -38.85988 -38.17758 -35.98194 -35.60073 -33.85038 -32.41642 -32.24027 -31.23930 -29.33063 -28.84134 -27.42329 -25.74848 -24.88503 -23.56591 -22.59670 -21.53524 -20.61638 -20.32869 -19.35122 -18.46349 -17.79295 -17.30187 -16.69694 -16.56596 -16.31004 -15.94969 -15.52762 -15.38453 -15.08003 -14.59485 -14.50886 -14.38710 -14.20897 -13.81469 -13.68470 -13.56277 -13.46917 -13.35944 -13.18787 -12.96776 -12.90181 -12.86903 -12.75743 -12.70791 -12.29014 -12.23228 -12.11762 -11.94192 -11.87914 -11.44669 -11.34141 -11.10267 -10.92187 -10.38648 -9.80747 -9.66145 -8.89521 -7.86031 -5.13109 0.09979 0.26618 1.12890 1.39479 1.45332 1.50821 1.51972 1.58936 2.14372 2.60874 3.14544 3.44589 3.54614 3.66143 3.92442 3.94930 3.96842 3.99138 4.00486 4.15020 4.18483 4.25209 4.46071 4.59497 4.60997 4.68672 4.69863 4.71073 4.71792 4.77468 4.88422 4.93192 5.00116 5.04614 5.15763 5.22016 5.26018 5.29832 5.43700 5.53881 5.59593 5.66209 6.27836 6.34534 6.51416 7.09894 7.42763 8.17263 8.40639 9.36748 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.004560 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.537543 B = 6139.239276 C = 7469.191405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.341 5.341 4 N -0.284 5.284 5 C 0.115 3.885 6 C -0.069 4.069 7 C -0.271 4.271 8 C 0.611 3.389 9 O -0.581 6.581 10 N -0.591 5.591 11 C 0.114 3.886 12 C -0.098 4.098 13 H 0.117 0.883 14 C -0.126 4.126 15 C 0.162 3.838 16 H 0.087 0.913 17 N -0.716 5.716 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.065 4.065 21 N -0.964 5.964 22 Si 0.958 3.042 23 H -0.294 1.294 24 H -0.302 1.302 25 H -0.269 1.269 26 C 0.086 3.914 27 C 0.162 3.838 28 Cl 0.030 6.970 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.375 0.625 43 H 0.247 0.753 44 H 0.052 0.948 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 -17.688 -10.073 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.124 5.124 4 N -0.108 5.108 5 C -0.051 4.051 6 C -0.128 4.128 7 C -0.287 4.287 8 C 0.398 3.602 9 O -0.461 6.461 10 N -0.321 5.321 11 C -0.009 4.009 12 C -0.118 4.118 13 H 0.135 0.865 14 C -0.183 4.183 15 C 0.051 3.949 16 H 0.105 0.895 17 N -0.355 5.355 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.258 4.258 21 N -0.614 5.614 22 Si 0.789 3.211 23 H -0.221 1.221 24 H -0.229 1.229 25 H -0.194 1.194 26 C -0.040 4.040 27 C 0.003 3.997 28 Cl 0.058 6.942 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.208 0.792 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.506 -18.633 -9.288 20.970 hybrid contribution 0.165 0.956 0.440 1.065 sum -2.341 -17.677 -8.848 19.906 Atomic orbital electron populations 1.22176 0.92485 1.05097 1.02548 1.22367 0.96730 0.74884 1.06919 1.48956 1.49069 1.13366 1.00964 1.77208 1.23537 1.03983 1.06045 1.22353 0.96456 0.94442 0.91820 1.20172 1.02026 0.92744 0.97859 1.19672 1.19663 0.95231 0.94136 1.16910 0.83649 0.81078 0.78530 1.90725 1.19602 1.77299 1.58520 1.48392 1.09765 1.24414 1.49575 1.22068 0.98366 0.86129 0.94302 1.22516 0.94075 0.95756 0.99416 0.86457 1.21523 1.01884 0.93873 1.01060 1.21620 0.98116 0.88373 0.86757 0.89538 1.42466 1.16668 1.60709 1.15608 1.19554 0.96202 1.25293 0.95168 0.90428 1.25329 0.98227 1.01532 1.00679 1.69804 1.21808 1.40522 1.29298 0.85371 0.79408 0.76154 0.80211 1.22121 1.22901 1.19415 1.23272 0.79680 1.01112 0.99906 1.21843 1.01679 0.91443 0.84687 1.98416 1.95795 1.90677 1.09320 0.92898 0.92355 0.86916 0.86339 0.86354 0.90654 0.88609 0.91531 0.90391 0.93639 0.91270 0.92232 0.94632 0.79205 0.94356 0.92934 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 71.98 0.74 -1.43 16 2 C 0.11 1.67 6.97 86.38 0.60 2.27 16 3 N -0.34 -8.80 3.58 -336.07 -1.20 -10.00 16 4 N -0.28 -9.06 12.49 -46.66 -0.58 -9.64 16 5 C 0.11 4.06 7.26 43.53 0.32 4.37 16 6 C -0.07 -2.47 10.28 71.23 0.73 -1.74 16 7 C -0.27 -9.51 4.80 -20.12 -0.10 -9.60 16 8 C 0.61 23.62 7.23 86.62 0.63 24.25 16 9 O -0.58 -25.92 17.44 -4.12 -0.07 -26.00 16 10 N -0.59 -20.77 3.34 -815.03 -2.72 -23.49 16 11 C 0.11 3.65 6.45 86.73 0.56 4.20 16 12 C -0.10 -2.77 3.41 -9.60 -0.03 -2.80 16 13 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 14 C -0.13 -3.76 8.81 71.98 0.63 -3.12 16 15 C 0.16 5.59 3.47 46.38 0.16 5.75 16 16 H 0.09 2.80 8.09 -2.39 -0.02 2.78 16 17 N -0.72 -32.65 4.57 -316.42 -1.44 -34.09 16 18 C -0.23 -11.75 9.96 84.03 0.84 -10.91 16 19 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 20 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 21 N -0.96 -56.76 13.06 21.65 0.28 -56.48 16 22 Si 0.96 44.66 29.55 68.60 2.03 46.69 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C 0.09 2.83 6.39 86.79 0.55 3.38 16 27 C 0.16 4.61 7.54 84.32 0.64 5.25 16 28 Cl 0.03 0.67 28.57 -2.72 -0.08 0.59 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 1.27 7.78 -2.39 -0.02 1.25 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.07 2.52 8.01 -2.39 -0.02 2.50 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.67 7.82 -2.39 -0.02 1.65 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.03 1.33 6.36 -2.39 -0.02 1.32 16 42 H 0.37 19.11 6.34 -92.70 -0.59 18.52 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.05 2.03 7.70 -2.39 -0.02 2.01 16 45 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -69.27 390.01 3.36 -65.91 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.42 Total: 29.72 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 6.73 Total: 16.80 kcal Atomic # 7 Polarization: -128.04 SS G_CDS: -5.67 Total: -133.71 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.07 Total: -26.00 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -69.27 3.36 -65.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939797955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.580 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds