Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46508 * 109.47264 * 2 1 4 4 N 1.39930 * 125.74961 * 89.97408 * 3 2 1 5 5 C 1.30408 * 108.95587 * 180.02562 * 4 3 2 6 6 C 1.50700 * 125.97480 * 179.97438 * 5 4 3 7 7 C 1.41346 * 108.05118 * 359.97438 * 5 4 3 8 8 C 1.47298 * 126.43504 * 179.97438 * 7 5 4 9 9 O 1.21618 * 119.99547 * 90.00215 * 8 7 5 10 10 N 1.34778 * 120.00310 * 270.00172 * 8 7 5 11 11 C 1.47015 * 125.64845 * 179.97438 * 10 8 7 12 12 C 1.54325 * 107.27065 * 178.98781 * 11 10 8 13 13 H 1.08993 * 110.72326 * 96.17079 * 12 11 10 14 14 C 1.52999 * 110.72134 * 219.44639 * 12 11 10 15 15 C 1.55157 * 102.94374 * 337.80787 * 12 11 10 16 16 H 1.09001 * 111.00846 * 153.57645 * 15 12 11 17 17 N 1.46502 * 111.00342 * 277.43173 * 15 12 11 18 18 C 1.36939 * 119.99864 * 204.99715 * 17 15 12 19 19 H 1.08003 * 119.99867 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00290 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99619 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00441 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46769 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47066 * 119.99584 * 22 20 18 25 25 H 1.48492 * 109.47467 * 240.00126 * 22 20 18 26 26 C 1.47425 * 125.64271 * 0.05484 * 10 8 7 27 27 C 1.34344 * 125.74411 * 270.28945 * 3 2 1 28 28 Cl 1.73598 * 126.32557 * 359.95769 * 27 3 2 29 29 H 1.09004 * 109.47085 * 59.99814 * 1 2 3 30 30 H 1.08999 * 109.47381 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47355 * 300.00547 * 1 2 3 32 32 H 1.08993 * 109.47297 * 239.99539 * 2 1 3 33 33 H 1.09002 * 109.47239 * 119.99417 * 2 1 3 34 34 H 1.08998 * 109.47281 * 270.00213 * 6 5 4 35 35 H 1.09002 * 109.46768 * 30.00079 * 6 5 4 36 36 H 1.08999 * 109.47193 * 149.99560 * 6 5 4 37 37 H 1.09000 * 109.88350 * 59.56990 * 11 10 8 38 38 H 1.08998 * 109.88602 * 298.40656 * 11 10 8 39 39 H 1.09001 * 109.47064 * 173.51920 * 14 12 11 40 40 H 1.09002 * 109.47158 * 293.52382 * 14 12 11 41 41 H 1.09003 * 109.47236 * 53.51711 * 14 12 11 42 42 H 0.96994 * 120.00503 * 24.99476 * 17 15 12 43 43 H 0.97002 * 119.99623 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.36633 * 85.25141 * 26 10 8 45 45 H 1.08996 * 110.37033 * 322.91522 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2904 2.1522 1.1356 5 6 2.7062 3.3294 0.7589 6 6 3.1051 4.4610 1.6706 7 6 2.7173 3.3584 -0.6543 8 6 3.1181 4.4937 -1.5029 9 8 4.2769 4.6121 -1.8525 10 7 2.2007 5.4012 -1.8919 11 6 2.4625 6.5772 -2.7344 12 6 1.1168 7.3051 -2.9359 13 1 1.0066 8.1179 -2.2181 14 6 0.9924 7.8262 -4.3691 15 6 0.0738 6.1887 -2.6653 16 1 -0.8689 6.6107 -2.3170 17 7 -0.1319 5.3622 -3.8574 18 6 -1.3111 4.6871 -4.0272 19 1 -2.0893 4.7636 -3.2822 20 6 -1.5063 3.9044 -5.1569 21 7 -0.5581 3.8116 -6.0650 22 14 -3.1146 2.9829 -5.3883 23 1 -4.0097 3.2520 -4.2343 24 1 -3.7708 3.4390 -6.6399 25 1 -2.8422 1.5257 -5.4748 26 6 0.7689 5.3798 -1.5415 27 6 2.2747 2.1230 -1.0904 28 17 2.0897 1.6216 -2.7420 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.2322 5.0759 1.8899 35 1 3.5061 4.0551 2.5994 36 1 3.8655 5.0704 1.1822 37 1 2.8611 6.2612 -3.6984 38 1 3.1713 7.2393 -2.2370 39 1 -0.0070 8.2333 -4.5222 40 1 1.7331 8.6081 -4.5369 41 1 1.1628 7.0082 -5.0691 42 1 0.5671 5.2932 -4.5263 43 1 -0.6944 3.2644 -6.8542 44 1 0.6077 5.8573 -0.5750 45 1 0.3973 4.3552 -1.5262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939797957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = 29.284669 kcal Electronic energy + Delta-G solvation = -28887.846984 eV Core-core repulsion = 24967.490331 eV Total energy + Delta-G solvation = -3920.356653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.62918 -40.83177 -38.85295 -38.09335 -35.96763 -35.60456 -33.85530 -32.39879 -32.23910 -31.20678 -29.31958 -28.78207 -27.41771 -25.75697 -24.90287 -23.56016 -22.58609 -21.47113 -20.61927 -20.31732 -19.35036 -18.45796 -17.79618 -17.25447 -16.67628 -16.51613 -16.31642 -16.03153 -15.55159 -15.25011 -15.15048 -14.62127 -14.42630 -14.34268 -14.17462 -13.90460 -13.63921 -13.53819 -13.40604 -13.31938 -13.19072 -12.97956 -12.90230 -12.86202 -12.78012 -12.68311 -12.31371 -12.23728 -12.08583 -11.95449 -11.87650 -11.45162 -11.34235 -11.08952 -10.93825 -10.35528 -9.78713 -9.64425 -8.89484 -7.87446 -5.13860 0.20231 0.29346 1.18638 1.40196 1.45946 1.46891 1.48120 1.55984 2.18144 2.58507 3.19298 3.43708 3.54743 3.69415 3.91379 3.93296 3.95226 3.97480 4.03037 4.16274 4.20741 4.25645 4.47477 4.62366 4.65254 4.69972 4.71423 4.72667 4.76216 4.79457 4.90931 4.93921 5.00837 5.05368 5.11410 5.25721 5.27958 5.32204 5.45204 5.52298 5.57966 5.65477 6.30595 6.32894 6.53126 7.11470 7.41148 8.16875 8.39632 9.35612 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.005763 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.155342 B = 4857.499307 C = 6788.880083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.112 3.888 3 N -0.346 5.346 4 N -0.281 5.281 5 C 0.116 3.884 6 C -0.072 4.072 7 C -0.273 4.273 8 C 0.611 3.389 9 O -0.582 6.582 10 N -0.590 5.590 11 C 0.114 3.886 12 C -0.097 4.097 13 H 0.121 0.879 14 C -0.124 4.124 15 C 0.160 3.840 16 H 0.088 0.912 17 N -0.715 5.715 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.964 5.964 22 Si 0.954 3.046 23 H -0.264 1.264 24 H -0.299 1.299 25 H -0.302 1.302 26 C 0.085 3.915 27 C 0.151 3.849 28 Cl 0.013 6.987 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.373 0.627 43 H 0.245 0.755 44 H 0.091 0.909 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 -0.206 16.130 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.007 4.007 3 N -0.128 5.128 4 N -0.104 5.104 5 C -0.050 4.050 6 C -0.131 4.131 7 C -0.289 4.289 8 C 0.399 3.601 9 O -0.463 6.463 10 N -0.320 5.320 11 C -0.008 4.008 12 C -0.117 4.117 13 H 0.139 0.861 14 C -0.182 4.182 15 C 0.050 3.950 16 H 0.106 0.894 17 N -0.354 5.354 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.615 5.615 22 Si 0.785 3.215 23 H -0.189 1.189 24 H -0.227 1.227 25 H -0.229 1.229 26 C -0.040 4.040 27 C -0.007 4.007 28 Cl 0.042 6.958 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.206 0.794 43 H 0.054 0.946 44 H 0.109 0.891 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.559 -1.214 16.834 17.249 hybrid contribution -0.391 -0.742 -2.089 2.251 sum 3.168 -1.957 14.745 15.208 Atomic orbital electron populations 1.22164 0.92889 1.04943 1.02344 1.22270 0.96435 0.75382 1.06603 1.48870 1.49532 1.13291 1.01125 1.77132 1.23580 1.04064 1.05630 1.22731 0.96212 0.95082 0.91018 1.20401 1.03023 0.92270 0.97378 1.19735 1.19580 0.94612 0.94981 1.16917 0.83730 0.80736 0.78757 1.90722 1.19997 1.76799 1.58752 1.48315 1.09580 1.24891 1.49253 1.22081 0.98591 0.86319 0.93829 1.22524 0.92352 0.97556 0.99267 0.86081 1.21503 1.01878 1.00111 0.94680 1.21677 0.96715 0.90082 0.86573 0.89445 1.42465 1.16554 1.54695 1.21682 1.19583 0.93619 1.19557 1.02837 0.90387 1.25311 1.00225 1.02623 0.97745 1.69827 1.34429 1.45366 1.11904 0.85351 0.80797 0.77856 0.77503 1.18853 1.22662 1.22949 1.23236 0.79315 1.01449 1.00016 1.22133 1.01598 0.92549 0.84406 1.98499 1.95699 1.91033 1.10606 0.93903 0.87160 0.91707 0.87797 0.85381 0.87913 0.88264 0.90484 0.94085 0.89978 0.92409 0.91131 0.95030 0.79360 0.94578 0.89108 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.11 2.25 6.97 86.38 0.60 2.86 16 3 N -0.35 -9.90 3.58 -336.06 -1.20 -11.10 16 4 N -0.28 -8.06 12.49 -46.66 -0.58 -8.64 16 5 C 0.12 3.35 7.26 43.53 0.32 3.66 16 6 C -0.07 -1.46 10.28 71.24 0.73 -0.73 16 7 C -0.27 -9.52 4.78 -20.12 -0.10 -9.62 16 8 C 0.61 23.45 7.23 86.63 0.63 24.08 16 9 O -0.58 -25.90 17.43 -4.09 -0.07 -25.97 16 10 N -0.59 -20.48 3.33 -815.77 -2.71 -23.19 16 11 C 0.11 3.62 6.46 86.73 0.56 4.18 16 12 C -0.10 -2.71 3.42 -9.61 -0.03 -2.74 16 13 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.12 -3.71 8.71 71.98 0.63 -3.08 16 15 C 0.16 5.48 3.47 46.39 0.16 5.64 16 16 H 0.09 2.79 8.09 -2.39 -0.02 2.77 16 17 N -0.72 -32.74 4.59 -316.32 -1.45 -34.19 16 18 C -0.22 -11.44 9.96 84.03 0.84 -10.60 16 19 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 21 N -0.96 -57.27 13.06 21.65 0.28 -56.99 16 22 Si 0.95 44.67 29.55 68.60 2.03 46.70 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 26 C 0.09 2.77 6.38 86.87 0.55 3.32 16 27 C 0.15 5.18 7.54 84.32 0.64 5.82 16 28 Cl 0.01 0.50 28.57 -2.72 -0.08 0.42 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.93 7.78 -2.39 -0.02 1.91 16 33 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.64 8.01 -2.39 -0.02 1.62 16 37 H 0.04 1.53 7.76 -2.39 -0.02 1.51 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.03 1.18 6.48 -2.39 -0.02 1.16 16 42 H 0.37 19.27 6.38 -92.71 -0.59 18.68 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 1.84 7.69 -2.39 -0.02 1.82 16 Total: -1.00 -71.01 390.00 3.35 -67.66 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.41 Total: 28.14 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.72 Total: 17.17 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -5.67 Total: -134.12 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.07 Total: -25.97 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.08 Total: 0.42 kcal Total: -71.01 3.35 -67.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939797957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.944 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds