Wall clock time and date at job start Sat Apr 11 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49871 * 2 1 4 4 C 1.53191 * 109.49800 * 239.93520 * 2 1 3 5 5 N 1.46928 * 108.77237 * 185.38207 * 4 2 1 6 6 C 1.36938 * 120.62910 * 233.58028 * 5 4 2 7 7 H 1.07996 * 120.00265 * 152.60679 * 6 5 4 8 8 C 1.38815 * 120.00093 * 332.61683 * 6 5 4 9 9 N 1.31620 * 120.00190 * 159.30281 * 8 6 5 10 10 Si 1.86799 * 120.00017 * 339.30126 * 8 6 5 11 11 H 1.48504 * 109.47203 * 92.97710 * 10 8 6 12 12 H 1.48504 * 109.47098 * 212.97476 * 10 8 6 13 13 H 1.48494 * 109.47032 * 332.97631 * 10 8 6 14 14 C 1.46917 * 118.74040 * 53.61059 * 5 4 2 15 15 C 1.53197 * 108.77595 * 306.38758 * 14 5 4 16 16 C 1.53037 * 109.30811 * 54.63640 * 15 14 5 17 17 H 1.09005 * 109.45927 * 178.61297 * 16 15 14 18 18 N 1.46501 * 109.46314 * 58.65937 * 16 15 14 19 19 C 1.34774 * 119.99864 * 84.92622 * 18 16 15 20 20 O 1.21474 * 120.00508 * 0.02562 * 19 18 16 21 21 C 1.48461 * 119.99447 * 180.02562 * 19 18 16 22 22 C 1.39536 * 120.54770 * 179.72810 * 21 19 18 23 23 C 1.38757 * 118.26173 * 179.73209 * 22 21 19 24 24 C 1.50708 * 120.42409 * 180.25680 * 23 22 21 25 25 F 1.39907 * 109.46791 * 210.28233 * 24 23 22 26 26 F 1.39891 * 109.47366 * 330.28089 * 24 23 22 27 27 N 1.32204 * 119.15074 * 0.54019 * 23 22 21 28 28 C 1.31886 * 121.03098 * 359.71560 * 27 23 22 29 29 N 1.31580 * 121.91931 * 0.02562 * 28 27 23 30 30 H 1.08997 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47183 * 300.00305 * 1 2 3 32 32 H 1.09008 * 109.47090 * 59.99997 * 1 2 3 33 33 H 1.09002 * 109.58386 * 305.16952 * 4 2 1 34 34 H 1.09003 * 109.58611 * 65.45252 * 4 2 1 35 35 H 0.97000 * 120.00566 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.58889 * 66.17691 * 14 5 4 37 37 H 1.09004 * 109.59033 * 186.60215 * 14 5 4 38 38 H 1.09005 * 109.49613 * 174.58683 * 15 14 5 39 39 H 1.09002 * 109.49602 * 294.65167 * 15 14 5 40 40 H 0.96994 * 119.99608 * 264.93052 * 18 16 15 41 41 H 1.08007 * 120.86818 * 359.97144 * 22 21 19 42 42 H 1.09003 * 109.47006 * 90.28745 * 24 23 22 43 43 H 1.07999 * 119.03855 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8281 -1.1701 6 6 4.2932 -0.3779 -2.1952 7 1 5.2999 -0.0422 -1.9948 8 6 3.7984 -0.3527 -3.4919 9 7 4.3557 0.4271 -4.3939 10 14 2.3417 -1.4257 -3.9568 11 1 1.0849 -0.6516 -3.7946 12 1 2.4773 -1.8589 -5.3708 13 1 2.3050 -2.6197 -3.0746 14 6 4.1059 -1.4255 0.0300 15 6 3.5714 -0.6941 1.2655 16 6 2.0414 -0.7230 1.2481 17 1 1.6587 -0.2246 2.1389 18 7 1.5796 -2.1131 1.2306 19 6 1.4521 -2.7954 2.3859 20 8 1.7197 -2.2577 3.4417 21 6 0.9846 -4.2044 2.3680 22 6 0.8539 -4.9234 3.5567 23 6 0.4076 -6.2353 3.4854 24 6 0.2431 -7.0547 4.7395 25 9 0.4688 -8.4043 4.4476 26 9 1.1637 -6.6254 5.7012 27 7 0.1339 -6.7590 2.3027 28 6 0.2736 -6.0528 1.1977 29 7 0.6887 -4.8044 1.2177 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8901 33 1 1.6056 -1.7214 -1.2982 34 1 1.7611 -0.1589 -2.1391 35 1 4.0098 0.4450 -5.3000 36 1 3.8387 -2.4807 0.0859 37 1 5.1902 -1.3229 -0.0147 38 1 3.9345 -1.1888 2.1664 39 1 3.9165 0.3397 1.2538 40 1 1.3656 -2.5425 0.3876 41 1 1.0901 -4.4694 4.5078 42 1 -0.7691 -6.9306 5.1244 43 1 0.0413 -6.5129 0.2486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942175632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:50 Heat of formation + Delta-G solvation = -56.551587 kcal Electronic energy + Delta-G solvation = -30122.154377 eV Core-core repulsion = 25646.278904 eV Total energy + Delta-G solvation = -4475.875473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.53558 -47.53738 -41.73284 -40.02308 -38.02097 -34.89316 -34.41823 -32.97458 -32.47395 -31.93936 -30.31554 -28.20285 -26.46283 -25.78144 -24.93647 -24.10783 -22.64317 -21.31355 -20.97054 -19.10769 -18.97019 -18.52734 -18.10511 -17.41037 -16.94519 -16.24550 -16.04068 -15.98401 -15.71088 -15.35494 -15.06779 -14.75585 -14.34290 -14.27713 -14.08295 -13.84913 -13.71356 -13.54779 -13.40289 -13.34741 -12.80978 -12.27793 -12.15877 -12.01877 -11.60792 -11.55026 -11.41833 -11.28930 -11.27542 -10.74715 -10.64279 -10.53298 -10.32040 -10.29060 -10.10665 -9.82433 -9.74419 -9.51912 -8.95814 -8.65778 -7.03278 -5.99498 -3.35843 -0.03249 0.18752 2.43113 2.59232 2.82098 3.26011 3.31178 3.43507 3.43988 3.45670 3.49155 3.70167 4.08955 4.30445 4.40174 4.47112 4.47574 4.83428 4.86929 4.95815 5.03356 5.22710 5.23599 5.40620 5.56657 5.61052 5.79406 5.83305 5.89369 5.97324 6.09002 6.17054 6.20012 6.29876 6.32175 6.53769 6.55974 6.61737 6.63084 6.85493 7.28086 7.49729 7.90568 8.00685 8.28413 8.88498 9.66708 10.03562 11.16402 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.003047 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.953055 B = 9187.879073 C = 9805.356269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.131 3.869 5 N -0.604 5.604 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.907 5.907 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.147 4.147 16 C 0.156 3.844 17 H 0.084 0.916 18 N -0.685 5.685 19 C 0.566 3.434 20 O -0.526 6.526 21 C 0.146 3.854 22 C -0.142 4.142 23 C 0.097 3.903 24 C 0.331 3.669 25 F -0.181 7.181 26 F -0.187 7.187 27 N -0.480 5.480 28 C 0.304 3.696 29 N -0.480 5.480 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.263 0.737 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.413 0.587 41 H 0.170 0.830 42 H 0.139 0.861 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -11.687 16.823 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 H 0.110 0.890 4 C 0.005 3.995 5 N -0.327 5.327 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.550 5.550 10 Si 0.711 3.289 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.187 4.187 16 C 0.053 3.947 17 H 0.102 0.898 18 N -0.337 5.337 19 C 0.348 3.652 20 O -0.402 6.402 21 C -0.004 4.004 22 C -0.164 4.164 23 C -0.053 4.053 24 C 0.276 3.724 25 F -0.162 7.162 26 F -0.168 7.168 27 N -0.194 5.194 28 C 0.016 3.984 29 N -0.196 5.196 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.251 0.749 41 H 0.188 0.812 42 H 0.156 0.844 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -12.013 -11.623 16.500 23.487 hybrid contribution -0.628 -0.568 -0.173 0.864 sum -12.640 -12.192 16.327 23.979 Atomic orbital electron populations 1.21803 0.95477 1.01476 1.01621 1.21977 0.94969 1.01221 0.95781 0.88983 1.21377 0.85099 0.96828 0.96198 1.44352 1.00476 1.70125 1.17772 1.18921 0.98599 1.36209 0.85110 0.89628 1.25287 0.97989 0.98602 0.95655 1.69834 1.43225 1.37742 1.04172 0.86989 0.82577 0.82461 0.76904 1.21576 1.23129 1.19478 1.20892 0.97311 0.93935 0.85496 1.22402 0.94318 1.02503 0.99501 1.21083 0.94909 0.79811 0.98939 0.89823 1.46083 1.64402 1.14258 1.08925 1.17642 0.78847 0.83790 0.84894 1.90797 1.50584 1.68279 1.30558 1.21867 0.93828 0.95718 0.88946 1.22672 0.97411 0.94391 1.01952 1.22211 0.95697 0.92671 0.94709 1.20048 0.93490 0.75956 0.82889 1.93068 1.95968 1.33400 1.93771 1.93065 1.69958 1.89557 1.64199 1.68039 1.14443 1.38577 0.98353 1.25142 0.90497 0.85974 0.96783 1.68442 1.09785 1.12311 1.29063 0.93095 0.92879 0.92315 0.96039 0.90461 0.92735 0.96146 0.91772 0.92004 0.90519 0.74911 0.81200 0.84382 0.77091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.06 37.16 0.34 -1.64 16 2 C -0.12 -1.91 2.67 -90.50 -0.24 -2.16 16 3 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.13 2.63 3.19 -3.71 -0.01 2.62 16 5 N -0.60 -13.60 2.77 -172.32 -0.48 -14.08 16 6 C -0.26 -7.04 10.03 -15.06 -0.15 -7.19 16 7 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 8 C 0.02 0.67 5.23 -17.43 -0.09 0.57 16 9 N -0.91 -27.26 13.97 55.49 0.78 -26.48 16 10 Si 0.88 21.58 24.35 -169.99 -4.14 17.44 16 11 H -0.29 -6.75 6.62 56.52 0.37 -6.37 16 12 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 13 H -0.27 -6.44 6.64 56.52 0.38 -6.06 16 14 C 0.15 2.87 6.26 -3.71 -0.02 2.84 16 15 C -0.15 -2.40 5.77 -26.61 -0.15 -2.55 16 16 C 0.16 2.37 2.21 -67.89 -0.15 2.22 16 17 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 18 N -0.69 -9.95 3.59 -54.52 -0.20 -10.15 16 19 C 0.57 8.02 7.79 -12.05 -0.09 7.92 16 20 O -0.53 -8.39 16.09 5.39 0.09 -8.31 16 21 C 0.15 1.79 6.79 -82.63 -0.56 1.22 16 22 C -0.14 -1.46 9.07 -38.91 -0.35 -1.81 16 23 C 0.10 0.91 6.61 -82.24 -0.54 0.36 16 24 C 0.33 2.36 5.74 36.01 0.21 2.57 16 25 F -0.18 -1.69 17.09 2.25 0.04 -1.65 16 26 F -0.19 -1.56 16.55 2.25 0.04 -1.52 16 27 N -0.48 -4.85 10.08 -10.81 -0.11 -4.96 16 28 C 0.30 2.97 12.27 -92.26 -1.13 1.83 16 29 N -0.48 -5.67 9.70 -11.14 -0.11 -5.78 16 30 H 0.05 0.66 7.54 -51.93 -0.39 0.27 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.02 0.43 5.57 -51.93 -0.29 0.14 16 34 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 37 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.41 6.16 6.11 -40.82 -0.25 5.91 16 41 H 0.17 1.58 7.37 -52.48 -0.39 1.20 16 42 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -32.02 354.88 -7.04 -39.05 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.33 Total: 4.27 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -2.96 Total: 6.82 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.11 Total: -61.45 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.02 -7.04 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942175632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.501 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds