Wall clock time and date at job start Sat Apr 11 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34232 * 126.28431 * 2 1 4 4 H 0.97004 * 125.73602 * 0.04713 * 3 2 1 5 5 N 1.39932 * 108.52660 * 179.80840 * 3 2 1 6 6 C 1.30538 * 108.89267 * 0.39303 * 5 3 2 7 7 Cl 1.73598 * 126.00498 * 179.87954 * 6 5 3 8 8 C 1.38073 * 126.27832 * 180.02562 * 2 1 3 9 9 C 1.47385 * 126.42488 * 0.02562 * 8 2 1 10 10 O 1.21603 * 120.00116 * 269.97823 * 9 8 2 11 11 N 1.34776 * 120.00036 * 89.98036 * 9 8 2 12 12 C 1.46924 * 120.63061 * 354.58765 * 11 9 8 13 13 C 1.52759 * 109.01035 * 233.58345 * 12 11 9 14 14 C 1.53035 * 109.38655 * 305.58891 * 13 12 11 15 15 C 1.53048 * 109.53519 * 61.24249 * 14 13 12 16 16 C 1.46926 * 120.63112 * 174.87373 * 11 9 8 17 17 H 1.08998 * 109.58317 * 246.15416 * 16 11 9 18 18 C 1.52999 * 109.58735 * 6.43366 * 16 11 9 19 19 C 1.52998 * 109.47338 * 181.22915 * 18 16 11 20 20 N 1.46505 * 109.47055 * 174.74553 * 19 18 16 21 21 C 1.36940 * 119.99504 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00252 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99329 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00037 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99686 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47042 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47350 * 119.99922 * 25 23 21 28 28 H 1.48501 * 109.47257 * 240.00092 * 25 23 21 29 29 H 1.09005 * 109.47219 * 269.95638 * 1 2 3 30 30 H 1.08998 * 109.47120 * 29.95138 * 1 2 3 31 31 H 1.09003 * 109.47763 * 149.95810 * 1 2 3 32 32 H 1.09002 * 109.58807 * 353.42693 * 12 11 9 33 33 H 1.09001 * 109.58421 * 113.84848 * 12 11 9 34 34 H 1.09003 * 109.56830 * 185.55192 * 13 12 11 35 35 H 1.09004 * 109.38372 * 65.52130 * 13 12 11 36 36 H 1.08997 * 109.46294 * 301.22195 * 14 13 12 37 37 H 1.09002 * 109.46220 * 181.25252 * 14 13 12 38 38 H 1.09000 * 109.49630 * 178.68380 * 15 14 13 39 39 H 1.08996 * 109.49945 * 58.58534 * 15 14 13 40 40 H 1.08998 * 109.47372 * 301.23272 * 18 16 11 41 41 H 1.09006 * 109.46951 * 61.22600 * 18 16 11 42 42 H 1.09006 * 109.47125 * 294.74215 * 19 18 16 43 43 H 1.09000 * 109.47175 * 54.74305 * 19 18 16 44 44 H 0.96999 * 119.99716 * 359.97438 * 20 19 18 45 45 H 0.97009 * 119.99397 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0019 2.0047 0.0006 5 7 3.6340 0.6553 0.0044 6 6 3.6598 -0.6499 -0.0014 7 17 5.0841 -1.6423 -0.0020 8 6 2.3239 -1.1131 -0.0005 9 6 1.8857 -2.5203 -0.0017 10 8 1.7049 -3.1017 1.0510 11 7 1.6854 -3.1627 -1.1694 12 6 1.7844 -2.4429 -2.4464 13 6 0.5026 -2.6695 -3.2459 14 6 0.2522 -4.1724 -3.3890 15 6 0.0752 -4.7961 -2.0026 16 6 1.3577 -4.5949 -1.1893 17 1 2.1742 -5.1500 -1.6510 18 6 1.1443 -5.0921 0.2419 19 6 0.8335 -6.5900 0.2203 20 7 0.7530 -7.0919 1.5944 21 6 0.4834 -8.4144 1.8255 22 1 0.3297 -9.0874 0.9949 23 6 0.4077 -8.8900 3.1274 24 7 0.5956 -8.0699 4.1396 25 14 0.0393 -10.6939 3.4428 26 1 -0.1291 -11.3987 2.1466 27 1 1.1643 -11.3048 4.1953 28 1 -1.2098 -10.8125 4.2372 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3635 -0.8896 -0.5145 32 1 1.9113 -1.3772 -2.2562 33 1 2.6363 -2.8191 -3.0128 34 1 0.6052 -2.2221 -4.2346 35 1 -0.3359 -2.2090 -2.7235 36 1 1.1019 -4.6362 -3.8900 37 1 -0.6501 -4.3358 -3.9784 38 1 -0.1263 -5.8622 -2.1063 39 1 -0.7590 -4.3157 -1.4914 40 1 2.0477 -4.9169 0.8260 41 1 0.3102 -4.5543 0.6928 42 1 -0.1188 -6.7563 -0.2835 43 1 1.6240 -7.1175 -0.3135 44 1 0.8915 -6.4875 2.3403 45 1 0.5424 -8.4023 5.0494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753780488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:41 Heat of formation + Delta-G solvation = 52.549249 kcal Electronic energy + Delta-G solvation = -28195.831395 eV Core-core repulsion = 24276.483570 eV Total energy + Delta-G solvation = -3919.347825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90765 -40.14709 -37.27321 -37.02487 -35.13308 -33.21162 -32.94044 -32.71117 -31.31698 -30.48998 -28.08060 -27.60143 -25.11200 -24.04317 -23.05350 -22.25151 -21.87661 -20.65556 -20.54837 -18.95006 -17.88729 -16.99580 -16.33912 -16.07754 -15.55166 -15.50504 -15.14133 -14.64151 -14.55327 -14.34373 -13.92153 -13.75972 -13.54928 -13.45477 -13.14941 -13.04263 -12.86945 -12.75759 -12.51959 -12.20541 -12.03709 -11.96518 -11.37708 -11.25254 -11.05280 -10.89969 -10.87580 -10.79026 -10.70994 -10.38118 -10.29120 -9.88524 -9.76168 -9.55358 -9.17386 -8.73595 -8.69372 -8.41534 -6.74031 -5.61157 -2.89006 1.18612 1.21423 1.89948 2.53152 2.62105 3.09687 3.51900 3.56558 3.59483 4.12833 4.42194 4.50159 4.62158 4.70171 4.72535 4.80482 4.93383 5.02751 5.05368 5.23824 5.27291 5.33018 5.39033 5.43615 5.58311 5.61916 5.66279 5.70710 5.79840 5.85265 5.98126 6.03417 6.19375 6.29033 6.44280 6.46323 6.61040 6.63472 6.75220 6.93848 7.14798 7.25824 7.48879 7.82791 8.32958 8.57896 9.68417 10.31210 10.65964 11.61850 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.003121 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.109254 B = 8969.032911 C = 9866.128189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.138 3.862 3 N -0.449 5.449 4 H 0.447 0.553 5 N -0.278 5.278 6 C 0.159 3.841 7 Cl 0.023 6.977 8 C -0.261 4.261 9 C 0.590 3.410 10 O -0.499 6.499 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.133 4.133 14 C -0.120 4.120 15 C -0.132 4.132 16 C 0.153 3.847 17 H 0.073 0.927 18 C -0.114 4.114 19 C 0.148 3.852 20 N -0.731 5.731 21 C -0.235 4.235 22 H 0.069 0.931 23 C -0.017 4.017 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.386 0.614 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 22.695 -18.000 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.006 3.994 3 N -0.159 5.159 4 H 0.293 0.707 5 N -0.103 5.103 6 C -0.034 4.034 7 Cl 0.051 6.949 8 C -0.277 4.277 9 C 0.375 3.625 10 O -0.372 6.372 11 N -0.333 5.333 12 C -0.012 4.012 13 C -0.171 4.171 14 C -0.158 4.158 15 C -0.171 4.171 16 C 0.050 3.950 17 H 0.091 0.909 18 C -0.152 4.152 19 C 0.020 3.980 20 N -0.375 5.375 21 C -0.366 4.366 22 H 0.087 0.913 23 C -0.213 4.213 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.219 0.781 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.891 23.128 -17.450 29.035 hybrid contribution -0.494 -0.989 0.406 1.177 sum 1.398 22.140 -17.044 27.975 Atomic orbital electron populations 1.20636 0.85667 1.04656 1.04904 1.21417 0.94841 0.85966 0.97131 1.45834 1.03036 1.08595 1.58387 0.70662 1.77158 0.96483 1.10758 1.25932 1.22590 0.88973 0.90433 1.01370 1.98438 1.35090 1.64671 1.96679 1.19948 0.91067 0.94924 1.21720 1.17211 0.77391 0.84110 0.83819 1.90985 1.49150 1.65484 1.31620 1.48055 1.69808 1.10128 1.05352 1.21548 0.97991 0.97074 0.84582 1.21843 0.97828 0.97501 0.99970 1.21539 1.01888 0.94844 0.97504 1.22058 0.97912 1.02119 0.94969 1.21359 0.96469 0.78774 0.98374 0.90925 1.22255 1.04452 0.95553 0.92900 1.20801 0.96880 0.91732 0.88617 1.42372 1.85686 1.08010 1.01446 1.19291 1.39644 0.85900 0.91789 0.91295 1.24743 1.03220 0.97699 0.95618 1.69700 1.56956 1.33587 0.97840 0.86142 0.77435 0.85201 0.77603 1.20639 1.21979 1.21990 0.88678 0.90041 0.88904 0.90362 0.91453 0.91002 0.91628 0.91768 0.91766 0.89938 0.91411 0.89391 0.90983 0.96742 0.97044 0.78060 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.25 36.00 0.37 -0.22 16 2 C 0.14 1.23 6.99 -81.61 -0.57 0.66 16 3 N -0.45 -3.51 7.28 33.86 0.25 -3.27 16 4 H 0.45 1.72 8.96 -182.72 -1.64 0.08 16 5 N -0.28 -3.16 12.64 33.18 0.42 -2.74 16 6 C 0.16 2.01 7.89 -16.90 -0.13 1.87 16 7 Cl 0.02 0.30 29.19 -51.86 -1.51 -1.22 16 8 C -0.26 -3.21 3.99 -105.03 -0.42 -3.63 16 9 C 0.59 8.65 6.96 -12.54 -0.09 8.56 16 10 O -0.50 -9.57 12.50 5.27 0.07 -9.50 16 11 N -0.60 -7.45 2.98 -166.76 -0.50 -7.95 16 12 C 0.11 0.99 6.29 -3.93 -0.02 0.97 16 13 C -0.13 -0.98 6.06 -26.84 -0.16 -1.14 16 14 C -0.12 -1.03 5.89 -26.69 -0.16 -1.19 16 15 C -0.13 -1.55 4.91 -26.61 -0.13 -1.68 16 16 C 0.15 2.13 2.99 -67.60 -0.20 1.93 16 17 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.11 -2.14 3.25 -26.73 -0.09 -2.22 16 19 C 0.15 3.21 5.81 -4.04 -0.02 3.19 16 20 N -0.73 -20.23 5.60 -59.90 -0.34 -20.56 16 21 C -0.23 -6.98 9.99 -15.06 -0.15 -7.13 16 22 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 24 N -0.93 -29.86 13.06 55.49 0.72 -29.13 16 25 Si 0.90 23.34 29.55 -169.99 -5.02 18.32 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.62 7.96 -51.93 -0.41 0.21 16 32 H 0.08 0.65 6.16 -51.93 -0.32 0.33 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.02 6.93 -51.93 -0.36 0.66 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.89 6.35 -51.93 -0.33 1.56 16 41 H 0.07 1.46 7.12 -51.93 -0.37 1.09 16 42 H 0.01 0.31 6.91 -51.93 -0.36 -0.05 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.39 11.45 7.67 -40.82 -0.31 11.14 16 45 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -36.74 376.51 -9.99 -46.73 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.87 Total: 4.30 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.88 Total: -0.65 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.56 Total: -63.65 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.51 Total: -1.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.74 -9.99 -46.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753780488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.278 kcal (2) G-P(sol) polarization free energy of solvation -36.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds