Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21602 * 120.00174 * 359.97438 * 8 7 6 10 10 C 1.47385 * 119.99710 * 179.97438 * 8 7 6 11 11 C 1.41394 * 126.42372 * 270.02170 * 10 8 7 12 12 Cl 1.73605 * 126.00179 * 359.97438 * 11 10 8 13 13 N 1.30527 * 107.98981 * 179.97438 * 11 10 8 14 14 N 1.39925 * 108.89594 * 359.97438 * 13 11 10 15 15 H 0.97000 * 125.73975 * 180.02562 * 14 13 11 16 16 C 1.34229 * 108.52482 * 359.74870 * 14 13 11 17 17 C 1.50701 * 126.28533 * 180.23713 * 16 14 13 18 18 C 1.53008 * 117.49638 * 8.81286 * 17 16 14 19 19 C 1.52997 * 117.50003 * 300.19255 * 17 16 14 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.08996 * 115.55101 * 154.51486 * 17 16 14 40 40 H 1.09000 * 117.49489 * 359.97438 * 18 17 16 41 41 H 1.08992 * 117.50104 * 145.01786 * 18 17 16 42 42 H 1.08998 * 117.49698 * 214.97633 * 19 17 16 43 43 H 1.08994 * 117.49973 * 359.96834 * 19 17 16 44 44 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0428 -4.7532 1.8247 10 6 2.3941 -4.9139 3.7199 11 6 3.6079 -5.6390 3.7154 12 17 4.6770 -5.8309 2.3611 13 7 3.7835 -6.1386 4.9084 14 7 2.7076 -5.7624 5.7201 15 1 2.5912 -6.0007 6.6531 16 6 1.8666 -5.0110 4.9921 17 6 0.5802 -4.3910 5.4738 18 6 0.2829 -4.4555 6.9733 19 6 -0.5050 -5.3331 5.9987 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 6.7549 1.6054 3.8956 27 1 7.8133 1.9462 1.7406 28 1 5.7137 3.0484 2.2480 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4436 -2.1651 1.3387 37 1 1.8183 -2.6512 0.3177 38 1 2.7232 -2.4351 2.9844 39 1 0.2562 -3.5012 4.9340 40 1 1.0176 -4.9468 7.6113 41 1 -0.2366 -3.6081 7.4203 42 1 -1.5430 -5.0629 5.8045 43 1 -0.2888 -6.4014 5.9952 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753830238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = 58.228954 kcal Electronic energy + Delta-G solvation = -27840.826558 eV Core-core repulsion = 23921.725023 eV Total energy + Delta-G solvation = -3919.101535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69557 -38.99130 -37.51957 -37.12824 -36.60886 -33.74354 -33.08842 -31.56916 -30.82042 -30.19438 -27.90627 -26.09979 -24.53273 -23.66843 -22.89366 -22.47258 -21.57626 -21.20843 -19.79695 -19.14344 -18.05729 -17.18698 -16.32023 -16.12377 -15.81340 -15.26401 -15.18232 -14.94940 -14.51540 -14.06870 -13.97766 -13.65213 -13.38927 -13.17664 -12.83755 -12.54365 -12.22025 -12.07413 -12.01874 -12.00450 -11.64812 -11.61476 -11.20219 -11.05306 -11.02407 -10.93946 -10.79237 -10.66639 -10.61879 -10.28988 -10.07937 -9.95247 -9.66948 -9.50926 -9.43579 -8.89556 -8.76443 -8.56517 -6.99435 -5.78225 -3.07419 1.34962 1.49652 2.14693 2.73097 2.86802 3.40602 3.40936 3.46709 3.48645 3.72282 4.01323 4.30481 4.47423 4.56117 4.71981 4.81932 5.15349 5.20183 5.36163 5.39047 5.41427 5.43425 5.56892 5.59142 5.65166 5.67409 5.77956 5.83459 5.94744 6.04262 6.20809 6.26685 6.38996 6.48009 6.55823 6.65283 6.70523 6.80620 6.96109 7.09570 7.17131 7.32007 7.69099 7.98472 8.38569 8.60332 9.50784 10.05942 10.41805 11.43240 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.004003 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.741182 B = 6992.545977 C = 8055.569364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.700 5.700 8 C 0.593 3.407 9 O -0.542 6.542 10 C -0.253 4.253 11 C 0.164 3.836 12 Cl 0.032 6.968 13 N -0.276 5.276 14 N -0.450 5.450 15 H 0.444 0.556 16 C 0.170 3.830 17 C -0.103 4.103 18 C -0.171 4.171 19 C -0.157 4.157 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.072 0.928 23 C -0.009 4.009 24 N -0.925 5.925 25 Si 0.900 3.100 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.282 1.282 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.411 0.589 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.386 0.614 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 -7.831 9.406 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.012 4.012 7 N -0.351 5.351 8 C 0.377 3.623 9 O -0.419 6.419 10 C -0.269 4.269 11 C -0.029 4.029 12 Cl 0.059 6.941 13 N -0.101 5.101 14 N -0.159 5.159 15 H 0.290 0.710 16 C 0.038 3.962 17 C -0.123 4.123 18 C -0.208 4.208 19 C -0.195 4.195 20 N -0.362 5.362 21 C -0.369 4.369 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.573 5.573 25 Si 0.731 3.269 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.355 -8.779 9.502 17.888 hybrid contribution 0.791 1.132 0.327 1.419 sum -11.564 -7.646 9.829 16.994 Atomic orbital electron populations 1.21939 0.96916 1.00944 1.00861 1.21734 0.93480 0.97777 1.00132 1.21814 1.04247 0.94634 0.98904 1.20537 0.86477 0.91058 0.95938 0.92938 1.21786 0.97218 0.93243 0.88911 1.45986 1.48016 1.10391 1.30664 1.17057 0.80545 0.81547 0.83172 1.90755 1.36288 1.68097 1.46781 1.19757 0.98948 1.12762 0.95404 1.22626 0.91984 0.97738 0.90552 1.98455 1.62471 1.96262 1.36871 1.77171 1.07498 1.23994 1.01451 1.45729 1.16305 1.41114 1.12735 0.71006 1.20303 0.92456 0.93479 0.89926 1.20699 0.91464 1.02285 0.97883 1.23066 1.03410 1.03458 0.90848 1.23101 0.97125 0.97440 1.01827 1.42455 0.98689 1.21237 1.73814 1.19161 0.88737 0.96380 1.32579 0.91007 1.24713 0.96487 0.97564 1.01770 1.69658 1.06883 1.29684 1.51072 0.86309 0.79683 0.82391 0.78494 1.21885 1.21909 1.20789 0.93249 0.93623 0.93013 0.91858 0.89469 0.95071 0.94132 0.91504 0.91721 0.75213 0.84509 0.88844 0.87062 0.87190 0.88298 0.77986 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.84 37.16 0.33 -1.69 16 2 C -0.11 -1.82 2.69 -90.62 -0.24 -2.07 16 3 C -0.14 -2.45 8.26 37.16 0.31 -2.15 16 4 C 0.17 3.05 2.18 -67.93 -0.15 2.90 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.11 1.88 4.73 -4.04 -0.02 1.86 16 7 N -0.70 -11.80 5.38 -61.39 -0.33 -12.13 16 8 C 0.59 10.32 7.31 -12.54 -0.09 10.22 16 9 O -0.54 -10.83 17.11 5.28 0.09 -10.74 16 10 C -0.25 -4.00 5.88 -105.04 -0.62 -4.62 16 11 C 0.16 2.68 7.89 -16.91 -0.13 2.55 16 12 Cl 0.03 0.53 29.19 -51.86 -1.51 -0.99 16 13 N -0.28 -4.09 12.64 33.18 0.42 -3.67 16 14 N -0.45 -5.03 7.17 33.86 0.24 -4.79 16 15 H 0.44 3.22 7.95 -182.73 -1.45 1.77 16 16 C 0.17 2.09 6.80 -81.60 -0.55 1.53 16 17 C -0.10 -0.96 6.02 -91.77 -0.55 -1.51 16 18 C -0.17 -1.04 10.14 -26.73 -0.27 -1.31 16 19 C -0.16 -1.10 10.23 -26.73 -0.27 -1.37 16 20 N -0.72 -16.11 4.44 -53.42 -0.24 -16.35 16 21 C -0.24 -5.93 7.57 -15.06 -0.11 -6.04 16 22 H 0.07 1.76 7.40 -52.49 -0.39 1.37 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 25 Si 0.90 21.45 29.55 -169.99 -5.02 16.42 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.02 6.71 -51.92 -0.35 0.67 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.41 7.23 8.12 -40.82 -0.33 6.90 16 39 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 0.45 7.16 -51.93 -0.37 0.08 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.57 7.80 -40.82 -0.32 9.25 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -30.83 389.41 -9.89 -40.71 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.65 Total: 13.47 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.48 Total: -2.01 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.82 Total: -62.74 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -1.51 Total: -0.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.83 -9.89 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753830238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.943 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds