Wall clock time and date at job start Sat Apr 11 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21602 * 120.00174 * 359.97438 * 8 7 6 10 10 C 1.47385 * 119.99710 * 179.97438 * 8 7 6 11 11 C 1.41394 * 126.42372 * 270.02170 * 10 8 7 12 12 Cl 1.73605 * 126.00179 * 359.97438 * 11 10 8 13 13 N 1.30527 * 107.98981 * 179.97438 * 11 10 8 14 14 N 1.39925 * 108.89594 * 359.97438 * 13 11 10 15 15 H 0.97000 * 125.73975 * 180.02562 * 14 13 11 16 16 C 1.34229 * 108.52482 * 359.74870 * 14 13 11 17 17 C 1.50701 * 126.28533 * 180.23713 * 16 14 13 18 18 C 1.53008 * 117.49638 * 8.81286 * 17 16 14 19 19 C 1.52997 * 117.50003 * 300.19255 * 17 16 14 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.08996 * 115.55101 * 154.51486 * 17 16 14 40 40 H 1.09000 * 117.49489 * 359.97438 * 18 17 16 41 41 H 1.08992 * 117.50104 * 145.01786 * 18 17 16 42 42 H 1.08998 * 117.49698 * 214.97633 * 19 17 16 43 43 H 1.08994 * 117.49973 * 359.96834 * 19 17 16 44 44 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0428 -4.7532 1.8247 10 6 2.3941 -4.9139 3.7199 11 6 3.6079 -5.6390 3.7154 12 17 4.6770 -5.8309 2.3611 13 7 3.7835 -6.1386 4.9084 14 7 2.7076 -5.7624 5.7201 15 1 2.5912 -6.0007 6.6531 16 6 1.8666 -5.0110 4.9921 17 6 0.5802 -4.3910 5.4738 18 6 0.2829 -4.4555 6.9733 19 6 -0.5050 -5.3331 5.9987 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 6.7549 1.6054 3.8956 27 1 7.8133 1.9462 1.7406 28 1 5.7137 3.0484 2.2480 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4436 -2.1651 1.3387 37 1 1.8183 -2.6512 0.3177 38 1 2.7232 -2.4351 2.9844 39 1 0.2562 -3.5012 4.9340 40 1 1.0176 -4.9468 7.6113 41 1 -0.2366 -3.6081 7.4203 42 1 -1.5430 -5.0629 5.8045 43 1 -0.2888 -6.4014 5.9952 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753830238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:50 Heat of formation + Delta-G solvation = 37.755055 kcal Electronic energy + Delta-G solvation = -27841.714373 eV Core-core repulsion = 23921.725023 eV Total energy + Delta-G solvation = -3919.989350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.76618 -40.38789 -38.63596 -38.27897 -37.75385 -35.19503 -34.86204 -32.69207 -32.17619 -31.68267 -29.39552 -27.42164 -25.89356 -25.03156 -23.87261 -23.38766 -22.78315 -22.35361 -21.11809 -20.47552 -19.28101 -18.83898 -17.54645 -17.20768 -16.93861 -16.78185 -16.36957 -16.12274 -15.86808 -15.49778 -15.31935 -15.02072 -14.87271 -14.57958 -14.22004 -13.71898 -13.45373 -13.37836 -13.35360 -12.85840 -12.84227 -12.72910 -12.65919 -12.47787 -12.40141 -12.25161 -12.10142 -11.98631 -11.88995 -11.72154 -11.47041 -11.40436 -11.23622 -11.08788 -10.76612 -10.51724 -9.98046 -9.84749 -8.90382 -7.82522 -5.09156 0.32978 0.35081 0.94592 1.50201 1.50746 1.52198 1.59047 1.76306 2.41060 2.62798 2.81427 3.24618 3.50573 3.64144 3.66574 3.89325 3.92829 3.98019 4.03026 4.05782 4.35051 4.37749 4.43010 4.52616 4.63402 4.70810 4.72963 4.84053 4.93988 4.97899 5.01868 5.03679 5.12165 5.16132 5.20952 5.32088 5.37534 5.56075 5.64915 5.70604 5.82556 5.90004 6.15292 6.36800 6.58387 7.22259 7.45060 8.17762 8.42124 9.40081 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.004003 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.741182 B = 6992.545977 C = 8055.569364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.060 0.940 6 C 0.121 3.879 7 N -0.697 5.697 8 C 0.601 3.399 9 O -0.572 6.572 10 C -0.292 4.292 11 C 0.147 3.853 12 Cl 0.015 6.985 13 N -0.291 5.291 14 N -0.428 5.428 15 H 0.463 0.537 16 C 0.198 3.802 17 C -0.135 4.135 18 C -0.146 4.146 19 C -0.149 4.149 20 N -0.727 5.727 21 C -0.212 4.212 22 H 0.080 0.920 23 C -0.071 4.071 24 N -0.965 5.965 25 Si 0.954 3.046 26 H -0.293 1.293 27 H -0.307 1.307 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.408 0.592 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.372 0.628 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 -7.077 11.507 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.078 0.922 6 C -0.003 4.003 7 N -0.346 5.346 8 C 0.386 3.614 9 O -0.452 6.452 10 C -0.308 4.308 11 C -0.045 4.045 12 Cl 0.042 6.958 13 N -0.117 5.117 14 N -0.139 5.139 15 H 0.313 0.687 16 C 0.064 3.936 17 C -0.155 4.155 18 C -0.183 4.183 19 C -0.187 4.187 20 N -0.367 5.367 21 C -0.343 4.343 22 H 0.098 0.902 23 C -0.264 4.264 24 N -0.616 5.616 25 Si 0.786 3.214 26 H -0.220 1.220 27 H -0.234 1.234 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.244 0.756 39 H 0.149 0.851 40 H 0.128 0.872 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.204 0.796 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.143 -8.004 11.638 20.709 hybrid contribution 1.485 0.898 -0.270 1.756 sum -13.659 -7.106 11.369 19.139 Atomic orbital electron populations 1.21845 0.93800 1.01956 1.02178 1.21624 0.96017 0.96704 0.98434 1.21724 1.01624 0.95556 1.00237 1.20698 0.83871 0.92159 0.96860 0.92226 1.21717 0.98288 0.92056 0.88260 1.45975 1.47736 1.10479 1.30427 1.17207 0.79791 0.81303 0.83141 1.90723 1.37839 1.68608 1.48043 1.19735 0.99832 1.14688 0.96534 1.22679 0.92266 0.98811 0.90761 1.98437 1.63050 1.96394 1.37887 1.77091 1.08895 1.24452 1.01227 1.45708 1.14961 1.39947 1.13261 0.68695 1.20647 0.92744 0.91600 0.88621 1.20812 0.90906 1.03091 1.00713 1.23257 1.02769 1.03502 0.88771 1.23227 0.97049 0.97319 1.01076 1.42589 1.00604 1.20073 1.73444 1.19451 0.88711 0.96496 1.29688 0.90192 1.25328 0.97645 0.99690 1.03691 1.69813 1.06196 1.31673 1.53936 0.85412 0.78057 0.80544 0.77405 1.22044 1.23399 1.19451 0.92018 0.92249 0.92191 0.93315 0.93330 0.93191 0.93373 0.89311 0.93350 0.75593 0.85084 0.87171 0.85403 0.85977 0.88094 0.79646 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.84 71.98 0.64 -2.74 16 2 C -0.11 -3.38 2.69 -10.80 -0.03 -3.41 16 3 C -0.13 -4.53 8.26 71.98 0.59 -3.93 16 4 C 0.17 6.04 2.18 44.99 0.10 6.13 16 5 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 6 C 0.12 3.96 4.73 86.38 0.41 4.37 16 7 N -0.70 -23.59 5.38 -466.40 -2.51 -26.10 16 8 C 0.60 21.07 7.31 86.65 0.63 21.71 16 9 O -0.57 -23.11 17.11 -4.04 -0.07 -23.18 16 10 C -0.29 -9.24 5.88 -20.13 -0.12 -9.36 16 11 C 0.15 4.89 7.89 85.66 0.68 5.57 16 12 Cl 0.01 0.51 29.19 -2.72 -0.08 0.43 16 13 N -0.29 -8.51 12.64 -48.95 -0.62 -9.13 16 14 N -0.43 -8.82 7.17 -46.79 -0.34 -9.16 16 15 H 0.46 5.43 7.95 -213.43 -1.70 3.73 16 16 C 0.20 4.58 6.80 42.15 0.29 4.86 16 17 C -0.14 -2.18 6.02 -11.54 -0.07 -2.25 16 18 C -0.15 -1.21 10.14 30.60 0.31 -0.90 16 19 C -0.15 -1.60 10.23 30.59 0.31 -1.29 16 20 N -0.73 -32.84 4.44 -322.93 -1.43 -34.27 16 21 C -0.21 -10.55 7.57 84.04 0.64 -9.92 16 22 H 0.08 3.82 7.40 -2.91 -0.02 3.80 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.96 -57.12 13.06 21.65 0.28 -56.84 16 25 Si 0.95 44.68 29.55 68.60 2.03 46.70 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 27 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.36 6.55 -2.39 -0.02 1.35 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 2.02 6.01 -2.39 -0.01 2.00 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.54 6.71 -2.38 -0.02 2.53 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.41 14.49 8.12 -92.71 -0.75 13.74 16 39 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.11 0.56 7.16 -2.39 -0.02 0.54 16 41 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.37 19.01 7.80 -92.71 -0.72 18.28 16 45 H 0.24 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -68.70 389.41 -0.02 -68.71 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -2.12 Total: 37.39 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 4.84 Total: 5.44 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -4.62 Total: -135.50 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.07 Total: -23.18 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -0.08 Total: 0.43 kcal Total: -68.70 -0.02 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753830238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.466 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds