Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.69838 * 2 1 4 4 C 1.53193 * 109.58556 * 120.35361 * 2 1 3 5 5 C 1.53041 * 109.31045 * 174.42231 * 4 2 1 6 6 H 1.09000 * 109.46460 * 58.64277 * 5 4 2 7 7 N 1.46500 * 109.45993 * 178.61468 * 5 4 2 8 8 C 1.34776 * 120.00031 * 204.99609 * 7 5 4 9 9 O 1.21478 * 120.00238 * 0.02562 * 8 7 5 10 10 C 1.48460 * 120.00119 * 179.97438 * 8 7 5 11 11 C 1.39528 * 120.54953 * 180.02562 * 10 8 7 12 12 C 1.38762 * 118.26073 * 180.02562 * 11 10 8 13 13 C 1.50701 * 120.42471 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47429 * 209.99721 * 13 12 11 15 15 F 1.39897 * 109.47526 * 330.00167 * 13 12 11 16 16 N 1.32201 * 119.15088 * 0.02562 * 12 11 10 17 17 C 1.31882 * 121.03425 * 359.95531 * 16 12 11 18 18 N 1.31584 * 121.91656 * 0.04226 * 17 16 12 19 19 C 1.53039 * 109.53951 * 298.63334 * 5 4 2 20 20 C 1.53201 * 109.31182 * 61.36640 * 19 5 4 21 21 N 1.46920 * 109.58476 * 239.64432 * 2 1 3 22 22 C 1.36939 * 120.63454 * 6.57753 * 21 2 1 23 23 H 1.08000 * 119.99778 * 330.16857 * 22 21 2 24 24 C 1.38816 * 120.00075 * 150.16082 * 22 21 2 25 25 N 1.31625 * 119.99921 * 344.51235 * 24 22 21 26 26 Si 1.86791 * 119.99981 * 164.51137 * 24 22 21 27 27 H 1.48502 * 109.47272 * 60.00366 * 26 24 22 28 28 H 1.48502 * 109.47163 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47361 * 300.00049 * 26 24 22 30 30 H 1.09006 * 109.47144 * 299.64367 * 1 2 3 31 31 H 1.09000 * 109.47618 * 59.64651 * 1 2 3 32 32 H 1.09004 * 109.47530 * 179.64945 * 1 2 3 33 33 H 1.09001 * 109.49847 * 54.47080 * 4 2 1 34 34 H 1.09000 * 109.52436 * 294.38981 * 4 2 1 35 35 H 0.96999 * 119.99972 * 25.00176 * 7 5 4 36 36 H 1.07998 * 120.87256 * 359.74973 * 11 10 8 37 37 H 1.09008 * 109.47231 * 90.00368 * 13 12 11 38 38 H 1.08006 * 119.04182 * 180.02562 * 17 16 12 39 39 H 1.09000 * 109.50310 * 181.31409 * 19 5 4 40 40 H 1.08999 * 109.50011 * 301.41904 * 19 5 4 41 41 H 1.08997 * 109.58660 * 185.58131 * 20 19 5 42 42 H 1.08996 * 109.70217 * 65.21748 * 20 19 5 43 43 H 0.96993 * 120.00000 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8479 1.1702 6 1 4.0061 0.1474 1.0991 7 7 4.0652 -1.5157 2.3754 8 6 5.3294 -1.3021 2.7907 9 8 6.0561 -0.5556 2.1660 10 6 5.8336 -1.9783 4.0124 11 6 7.1403 -1.7651 4.4530 12 6 7.5622 -2.4218 5.6003 13 6 8.9636 -2.2273 6.1192 14 9 9.3825 -3.3885 6.7775 15 9 9.8246 -1.9616 5.0490 16 7 6.7194 -3.2210 6.2316 17 6 5.4904 -3.4000 5.7881 18 7 5.0471 -2.7983 4.7051 19 6 3.9569 -1.6657 -0.0634 20 6 3.4650 -0.9470 -1.3238 21 7 2.0224 -0.6995 -1.1944 22 6 1.1535 -1.1136 -2.1685 23 1 0.1397 -1.3810 -1.9096 24 6 1.5758 -1.1894 -3.4887 25 7 2.6863 -0.5883 -3.8600 26 14 0.5680 -2.1445 -4.7382 27 1 -0.7927 -1.5568 -4.8300 28 1 1.2284 -2.0721 -6.0663 29 1 0.4666 -3.5633 -4.3120 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5193 -0.8868 32 1 -0.3634 -1.0277 -0.0063 33 1 1.6029 -1.7253 1.2914 34 1 1.7659 -0.1673 2.1371 35 1 3.4848 -2.1115 2.8744 36 1 7.8072 -1.1096 3.9127 37 1 8.9801 -1.3889 6.8157 38 1 4.8285 -4.0599 6.3294 39 1 5.0412 -1.7696 -0.1037 40 1 3.4982 -2.6528 -0.0052 41 1 3.6517 -1.5718 -2.1971 42 1 3.9899 0.0019 -1.4342 43 1 2.9815 -0.6416 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947445306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = -62.830390 kcal Electronic energy + Delta-G solvation = -29200.232381 eV Core-core repulsion = 24724.084638 eV Total energy + Delta-G solvation = -4476.147742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.53862 -47.54189 -41.74274 -39.69242 -37.73192 -34.99582 -34.56086 -32.99056 -32.42661 -31.34207 -29.59671 -28.20481 -26.50968 -25.71866 -24.61793 -24.05548 -22.14244 -21.41402 -20.27696 -19.57664 -18.67627 -18.59094 -18.11040 -17.37016 -16.48828 -16.27776 -16.03889 -15.81310 -15.68006 -15.40571 -15.04370 -14.52910 -14.33854 -14.06321 -13.92301 -13.84997 -13.66520 -13.42522 -13.31642 -12.86425 -12.75542 -12.17172 -11.63378 -11.59068 -11.32728 -11.25585 -11.18055 -10.97162 -10.94699 -10.68020 -10.55830 -10.37804 -10.32296 -10.17058 -10.07522 -9.89036 -9.78153 -9.44222 -8.84523 -8.44930 -6.65926 -5.78894 -3.23326 -0.05619 0.15943 2.44100 2.58849 2.81631 3.30233 3.37382 3.39996 3.43953 3.44196 3.48530 3.69121 4.07268 4.29347 4.38451 4.46570 4.47880 4.86874 5.00001 5.21168 5.33130 5.40037 5.51243 5.57152 5.72088 5.92203 6.11611 6.12161 6.17281 6.28671 6.32965 6.38416 6.46031 6.57955 6.73090 6.77649 6.99662 7.07261 7.25574 7.33963 7.51554 7.65781 7.81186 8.06031 8.45589 9.20679 9.84085 10.41256 11.29958 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.002245 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.421709 B =12471.379012 C =12940.629576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.148 3.852 6 H 0.085 0.915 7 N -0.694 5.694 8 C 0.562 3.438 9 O -0.519 6.519 10 C 0.147 3.853 11 C -0.141 4.141 12 C 0.098 3.902 13 C 0.330 3.670 14 F -0.181 7.181 15 F -0.186 7.186 16 N -0.481 5.481 17 C 0.301 3.699 18 N -0.482 5.482 19 C -0.147 4.147 20 C 0.176 3.824 21 N -0.587 5.587 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.407 0.593 36 H 0.171 0.829 37 H 0.140 0.860 38 H 0.212 0.788 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.022 0.978 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 -2.969 22.158 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.045 3.955 6 H 0.103 0.897 7 N -0.344 5.344 8 C 0.344 3.656 9 O -0.393 6.393 10 C -0.002 4.002 11 C -0.164 4.164 12 C -0.052 4.052 13 C 0.276 3.724 14 F -0.162 7.162 15 F -0.167 7.167 16 N -0.196 5.196 17 C 0.013 3.987 18 N -0.199 5.199 19 C -0.188 4.188 20 C 0.049 3.951 21 N -0.310 5.310 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.189 0.811 37 H 0.157 0.843 38 H 0.228 0.772 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.040 0.960 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.622 -3.013 21.941 23.422 hybrid contribution -0.087 -0.476 -0.858 0.985 sum 7.535 -3.489 21.082 22.659 Atomic orbital electron populations 1.21789 0.95660 1.01491 1.00336 1.20356 0.93158 0.93555 0.86520 0.95476 1.22399 0.93218 1.01926 0.99861 1.21222 0.94697 0.96821 0.82762 0.89656 1.46229 1.12260 1.47295 1.28604 1.17689 0.83156 0.81844 0.82876 1.90841 1.56363 1.36632 1.55505 1.21935 0.90733 0.92688 0.94857 1.22712 0.97508 1.00123 0.96048 1.22213 0.96651 0.93575 0.92726 1.20054 0.81706 0.87296 0.83372 1.93064 1.90725 1.51703 1.80752 1.93074 1.71241 1.94076 1.58310 1.68020 1.04609 1.14690 1.32239 1.25110 0.89598 0.94480 0.89482 1.68408 1.37507 1.06712 1.07237 1.22597 0.99813 0.99722 0.96643 1.20736 0.83329 0.97323 0.93692 1.44153 1.02939 1.64858 1.19089 1.19110 0.95205 1.37873 0.86071 0.91290 1.25114 0.97898 0.99479 0.97027 1.70008 1.24105 1.43630 1.16863 0.86399 0.79615 0.80196 0.80702 1.20893 1.21688 1.21076 0.94287 0.91822 0.92720 0.91579 0.92526 0.75755 0.81120 0.84344 0.77157 0.92819 0.92440 0.89296 0.96010 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.95 37.16 0.30 -2.12 16 2 C 0.17 3.38 3.50 -67.60 -0.24 3.15 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.15 2.47 2.42 -67.89 -0.16 2.31 16 6 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 7 N -0.69 -9.70 5.07 -54.51 -0.28 -9.98 16 8 C 0.56 8.13 7.79 -12.05 -0.09 8.04 16 9 O -0.52 -9.06 16.09 5.38 0.09 -8.98 16 10 C 0.15 1.73 6.79 -82.64 -0.56 1.16 16 11 C -0.14 -1.44 9.07 -38.91 -0.35 -1.79 16 12 C 0.10 0.88 6.61 -82.24 -0.54 0.34 16 13 C 0.33 2.30 5.74 36.01 0.21 2.51 16 14 F -0.18 -1.63 17.09 2.25 0.04 -1.59 16 15 F -0.19 -1.57 16.56 2.25 0.04 -1.54 16 16 N -0.48 -4.47 10.08 -10.81 -0.11 -4.58 16 17 C 0.30 2.51 12.27 -92.26 -1.13 1.38 16 18 N -0.48 -4.96 9.70 -11.14 -0.11 -5.06 16 19 C -0.15 -2.84 5.65 -26.61 -0.15 -3.00 16 20 C 0.18 4.14 5.28 -3.70 -0.02 4.12 16 21 N -0.59 -14.03 2.99 -164.77 -0.49 -14.52 16 22 C -0.25 -6.61 8.58 -15.06 -0.13 -6.74 16 23 H 0.07 1.75 6.23 -52.49 -0.33 1.42 16 24 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 25 N -0.90 -25.84 11.23 55.49 0.62 -25.22 16 26 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 32 H 0.05 0.98 7.40 -51.93 -0.38 0.60 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.41 4.90 7.99 -40.82 -0.33 4.57 16 36 H 0.17 1.65 7.37 -52.49 -0.39 1.26 16 37 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.21 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 2.35 6.15 -51.93 -0.32 2.03 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -31.44 363.02 -8.33 -39.77 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.47 Total: 2.85 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -3.10 Total: 7.08 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.36 Total: -59.36 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.44 -8.33 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947445306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.063 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds