Wall clock time and date at job start Sat Apr 11 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.69838 * 2 1 4 4 C 1.53193 * 109.58556 * 120.35361 * 2 1 3 5 5 C 1.53041 * 109.31045 * 174.42231 * 4 2 1 6 6 H 1.09000 * 109.46460 * 58.64277 * 5 4 2 7 7 N 1.46500 * 109.45993 * 178.61468 * 5 4 2 8 8 C 1.34776 * 120.00031 * 204.99609 * 7 5 4 9 9 O 1.21478 * 120.00238 * 0.02562 * 8 7 5 10 10 C 1.48460 * 120.00119 * 179.97438 * 8 7 5 11 11 C 1.39528 * 120.54953 * 180.02562 * 10 8 7 12 12 C 1.38762 * 118.26073 * 180.02562 * 11 10 8 13 13 C 1.50701 * 120.42471 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47429 * 209.99721 * 13 12 11 15 15 F 1.39897 * 109.47526 * 330.00167 * 13 12 11 16 16 N 1.32201 * 119.15088 * 0.02562 * 12 11 10 17 17 C 1.31882 * 121.03425 * 359.95531 * 16 12 11 18 18 N 1.31584 * 121.91656 * 0.04226 * 17 16 12 19 19 C 1.53039 * 109.53951 * 298.63334 * 5 4 2 20 20 C 1.53201 * 109.31182 * 61.36640 * 19 5 4 21 21 N 1.46920 * 109.58476 * 239.64432 * 2 1 3 22 22 C 1.36939 * 120.63454 * 6.57753 * 21 2 1 23 23 H 1.08000 * 119.99778 * 330.16857 * 22 21 2 24 24 C 1.38816 * 120.00075 * 150.16082 * 22 21 2 25 25 N 1.31625 * 119.99921 * 344.51235 * 24 22 21 26 26 Si 1.86791 * 119.99981 * 164.51137 * 24 22 21 27 27 H 1.48502 * 109.47272 * 60.00366 * 26 24 22 28 28 H 1.48502 * 109.47163 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47361 * 300.00049 * 26 24 22 30 30 H 1.09006 * 109.47144 * 299.64367 * 1 2 3 31 31 H 1.09000 * 109.47618 * 59.64651 * 1 2 3 32 32 H 1.09004 * 109.47530 * 179.64945 * 1 2 3 33 33 H 1.09001 * 109.49847 * 54.47080 * 4 2 1 34 34 H 1.09000 * 109.52436 * 294.38981 * 4 2 1 35 35 H 0.96999 * 119.99972 * 25.00176 * 7 5 4 36 36 H 1.07998 * 120.87256 * 359.74973 * 11 10 8 37 37 H 1.09008 * 109.47231 * 90.00368 * 13 12 11 38 38 H 1.08006 * 119.04182 * 180.02562 * 17 16 12 39 39 H 1.09000 * 109.50310 * 181.31409 * 19 5 4 40 40 H 1.08999 * 109.50011 * 301.41904 * 19 5 4 41 41 H 1.08997 * 109.58660 * 185.58131 * 20 19 5 42 42 H 1.08996 * 109.70217 * 65.21748 * 20 19 5 43 43 H 0.96993 * 120.00000 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8479 1.1702 6 1 4.0061 0.1474 1.0991 7 7 4.0652 -1.5157 2.3754 8 6 5.3294 -1.3021 2.7907 9 8 6.0561 -0.5556 2.1660 10 6 5.8336 -1.9783 4.0124 11 6 7.1403 -1.7651 4.4530 12 6 7.5622 -2.4218 5.6003 13 6 8.9636 -2.2273 6.1192 14 9 9.3825 -3.3885 6.7775 15 9 9.8246 -1.9616 5.0490 16 7 6.7194 -3.2210 6.2316 17 6 5.4904 -3.4000 5.7881 18 7 5.0471 -2.7983 4.7051 19 6 3.9569 -1.6657 -0.0634 20 6 3.4650 -0.9470 -1.3238 21 7 2.0224 -0.6995 -1.1944 22 6 1.1535 -1.1136 -2.1685 23 1 0.1397 -1.3810 -1.9096 24 6 1.5758 -1.1894 -3.4887 25 7 2.6863 -0.5883 -3.8600 26 14 0.5680 -2.1445 -4.7382 27 1 -0.7927 -1.5568 -4.8300 28 1 1.2284 -2.0721 -6.0663 29 1 0.4666 -3.5633 -4.3120 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5193 -0.8868 32 1 -0.3634 -1.0277 -0.0063 33 1 1.6029 -1.7253 1.2914 34 1 1.7659 -0.1673 2.1371 35 1 3.4848 -2.1115 2.8744 36 1 7.8072 -1.1096 3.9127 37 1 8.9801 -1.3889 6.8157 38 1 4.8285 -4.0599 6.3294 39 1 5.0412 -1.7696 -0.1037 40 1 3.4982 -2.6528 -0.0052 41 1 3.6517 -1.5718 -2.1971 42 1 3.9899 0.0019 -1.4342 43 1 2.9815 -0.6416 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947445306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:34 Heat of formation + Delta-G solvation = -82.794547 kcal Electronic energy + Delta-G solvation = -29201.098092 eV Core-core repulsion = 24724.084638 eV Total energy + Delta-G solvation = -4477.013453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.13837 -48.15565 -42.53345 -40.90676 -39.27627 -36.29086 -35.54033 -34.20671 -33.75529 -32.92412 -31.29558 -28.89595 -28.05221 -26.99703 -26.00782 -24.86467 -23.74559 -22.69791 -21.61952 -21.09604 -19.71845 -19.33952 -18.66153 -18.29987 -18.01507 -17.42577 -16.94298 -16.86976 -16.76698 -16.62865 -16.10023 -15.77899 -15.58986 -15.47095 -15.12270 -14.94657 -14.85636 -14.55296 -14.47181 -14.35942 -14.03985 -13.33441 -12.96365 -12.77771 -12.73016 -12.68705 -12.62338 -12.37305 -12.32481 -12.13912 -12.04712 -11.93376 -11.74298 -11.64742 -11.53226 -11.20630 -11.08068 -10.66120 -10.54148 -10.14704 -8.63392 -7.83352 -5.29804 -0.89060 -0.54202 1.46159 1.48188 1.50299 1.56505 1.68267 2.04537 2.47137 2.53422 2.66912 2.85633 3.03601 3.32567 3.35623 3.57912 3.61791 3.75818 3.83187 3.84430 4.02354 4.11634 4.25069 4.32770 4.37763 4.60395 4.69715 4.74641 4.78657 4.91118 4.94774 5.04476 5.06485 5.15073 5.33471 5.39110 5.44857 5.52080 5.56691 5.71559 5.74091 6.30027 6.44217 6.61731 6.94824 7.18124 7.89782 8.42573 9.24055 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.002245 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.421709 B =12471.379012 C =12940.629576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.160 3.840 3 H 0.015 0.985 4 C -0.118 4.118 5 C 0.159 3.841 6 H 0.067 0.933 7 N -0.684 5.684 8 C 0.563 3.437 9 O -0.555 6.555 10 C 0.134 3.866 11 C -0.146 4.146 12 C 0.103 3.897 13 C 0.329 3.671 14 F -0.193 7.193 15 F -0.196 7.196 16 N -0.486 5.486 17 C 0.305 3.695 18 N -0.487 5.487 19 C -0.132 4.132 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.249 4.249 23 H 0.080 0.920 24 C -0.056 4.056 25 N -0.940 5.940 26 Si 0.963 3.037 27 H -0.273 1.273 28 H -0.301 1.301 29 H -0.278 1.278 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.420 0.580 36 H 0.171 0.829 37 H 0.186 0.814 38 H 0.250 0.750 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.054 0.946 42 H -0.009 1.009 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 -4.078 25.366 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.032 0.968 4 C -0.158 4.158 5 C 0.055 3.945 6 H 0.085 0.915 7 N -0.334 5.334 8 C 0.347 3.653 9 O -0.432 6.432 10 C -0.014 4.014 11 C -0.168 4.168 12 C -0.047 4.047 13 C 0.275 3.725 14 F -0.174 7.174 15 F -0.177 7.177 16 N -0.201 5.201 17 C 0.018 3.982 18 N -0.203 5.203 19 C -0.172 4.172 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.097 0.903 24 C -0.251 4.251 25 N -0.587 5.587 26 Si 0.791 3.209 27 H -0.199 1.199 28 H -0.227 1.227 29 H -0.204 1.204 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.258 0.742 36 H 0.188 0.812 37 H 0.203 0.797 38 H 0.265 0.735 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.009 0.991 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.455 -4.144 25.206 26.347 hybrid contribution 0.291 -0.117 -1.753 1.781 sum 6.747 -4.261 23.452 24.773 Atomic orbital electron populations 1.21710 0.93856 1.01713 1.01163 1.20638 0.94738 0.92976 0.86282 0.96776 1.22202 0.92055 1.02431 0.99083 1.20847 0.95405 0.95499 0.82744 0.91524 1.45931 1.12532 1.47297 1.27630 1.18053 0.82685 0.81203 0.83369 1.90825 1.57223 1.38250 1.56938 1.21476 0.91575 0.93930 0.94451 1.22725 0.96989 1.00548 0.96580 1.22527 0.97598 0.92657 0.91952 1.20534 0.80194 0.88126 0.83649 1.93040 1.90731 1.52733 1.80877 1.93056 1.71479 1.94098 1.59093 1.68135 1.05038 1.14568 1.32331 1.25897 0.89743 0.93878 0.88675 1.68402 1.37413 1.06706 1.07828 1.22330 0.99211 0.99611 0.96028 1.20434 0.83729 0.95564 0.94546 1.44414 1.02604 1.65594 1.20065 1.19496 0.95700 1.36233 0.86491 0.90292 1.25871 0.99160 1.00996 0.99034 1.70184 1.26093 1.45787 1.16610 0.85406 0.78386 0.79084 0.77979 1.19913 1.22721 1.20434 0.90387 0.94160 0.92645 0.90611 0.89050 0.74184 0.81190 0.79749 0.73452 0.93434 0.92057 0.92793 0.99053 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.95 71.98 0.57 -3.69 16 2 C 0.16 6.16 3.50 44.97 0.16 6.31 16 3 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 4 C -0.12 -3.52 4.84 30.67 0.15 -3.37 16 5 C 0.16 5.21 2.42 45.02 0.11 5.32 16 6 H 0.07 2.48 7.58 -2.39 -0.02 2.46 16 7 N -0.68 -18.07 5.07 -444.69 -2.25 -20.33 16 8 C 0.56 15.91 7.79 86.97 0.68 16.59 16 9 O -0.56 -19.67 16.09 -3.65 -0.06 -19.73 16 10 C 0.13 2.96 6.79 41.99 0.29 3.24 16 11 C -0.15 -2.79 9.07 22.71 0.21 -2.58 16 12 C 0.10 1.63 6.61 42.63 0.28 1.91 16 13 C 0.33 3.82 5.74 71.24 0.41 4.23 16 14 F -0.19 -3.07 17.09 44.97 0.77 -2.30 16 15 F -0.20 -3.04 16.56 44.97 0.74 -2.30 16 16 N -0.49 -7.70 10.08 -188.11 -1.90 -9.59 16 17 C 0.31 4.14 12.27 180.92 2.22 6.36 16 18 N -0.49 -8.80 9.70 -189.15 -1.84 -10.63 16 19 C -0.13 -5.16 5.65 30.67 0.17 -4.99 16 20 C 0.18 9.07 5.28 86.36 0.46 9.53 16 21 N -0.60 -29.24 2.99 -675.22 -2.02 -31.25 16 22 C -0.25 -13.12 8.58 84.03 0.72 -12.40 16 23 H 0.08 3.94 6.23 -2.91 -0.02 3.93 16 24 C -0.06 -3.09 4.94 84.86 0.42 -2.67 16 25 N -0.94 -56.28 11.23 21.65 0.24 -56.03 16 26 Si 0.96 44.62 29.58 68.60 2.03 46.65 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 30 H 0.08 2.00 8.14 -2.38 -0.02 1.99 16 31 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 32 H 0.05 1.84 7.40 -2.38 -0.02 1.83 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.42 9.01 7.99 -92.71 -0.74 8.27 16 36 H 0.17 3.22 7.37 -2.91 -0.02 3.20 16 37 H 0.19 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.25 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 3.02 6.15 -2.39 -0.01 3.01 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -71.30 363.02 2.88 -68.42 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.32 Total: 13.31 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.84 Total: 23.79 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -7.76 Total: -127.84 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.51 Total: -4.60 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.30 2.88 -68.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947445306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.376 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds