Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70181 * 2 1 4 4 C 1.53196 * 109.58717 * 239.64432 * 2 1 3 5 5 C 1.53045 * 109.30889 * 185.57649 * 4 2 1 6 6 H 1.09005 * 109.44558 * 181.37807 * 5 4 2 7 7 N 1.46500 * 109.46259 * 301.34175 * 5 4 2 8 8 C 1.34770 * 120.00302 * 205.07339 * 7 5 4 9 9 O 1.21480 * 120.00062 * 359.97438 * 8 7 5 10 10 C 1.48456 * 120.00038 * 180.02562 * 8 7 5 11 11 C 1.39544 * 120.54932 * 179.97438 * 10 8 7 12 12 C 1.38756 * 118.26069 * 179.97438 * 11 10 8 13 13 C 1.50701 * 120.42036 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.46875 * 209.99991 * 13 12 11 15 15 F 1.39892 * 109.47486 * 329.99604 * 13 12 11 16 16 N 1.32204 * 119.15283 * 359.97438 * 12 11 10 17 17 C 1.31883 * 121.03425 * 0.02562 * 16 12 11 18 18 N 1.31586 * 121.91523 * 359.70916 * 17 16 12 19 19 C 1.53034 * 109.54086 * 61.36786 * 5 4 2 20 20 C 1.53192 * 109.31037 * 298.63368 * 19 5 4 21 21 N 1.46921 * 108.77775 * 54.63589 * 20 19 5 22 22 C 1.36938 * 120.63183 * 126.41376 * 21 20 19 23 23 H 1.08001 * 119.99789 * 209.52381 * 22 21 20 24 24 C 1.38815 * 119.99873 * 29.53018 * 22 21 20 25 25 N 1.31612 * 120.00169 * 16.11971 * 24 22 21 26 26 Si 1.86799 * 119.99538 * 196.12794 * 24 22 21 27 27 H 1.48501 * 109.47488 * 94.01896 * 26 24 22 28 28 H 1.48502 * 109.46661 * 214.01954 * 26 24 22 29 29 H 1.48495 * 109.47274 * 334.01316 * 26 24 22 30 30 H 1.09010 * 109.46813 * 180.35533 * 1 2 3 31 31 H 1.08992 * 109.47241 * 300.35499 * 1 2 3 32 32 H 1.09000 * 109.47244 * 60.36098 * 1 2 3 33 33 H 1.09002 * 109.49545 * 65.62955 * 4 2 1 34 34 H 1.08995 * 109.52514 * 305.54096 * 4 2 1 35 35 H 0.97006 * 119.99849 * 25.07238 * 7 5 4 36 36 H 1.07995 * 120.86427 * 359.97438 * 11 10 8 37 37 H 1.08995 * 109.47344 * 90.00140 * 13 12 11 38 38 H 1.07999 * 119.04061 * 180.02562 * 17 16 12 39 39 H 1.09005 * 109.49792 * 58.58384 * 19 5 4 40 40 H 1.09001 * 109.50223 * 178.68193 * 19 5 4 41 41 H 1.09003 * 109.58693 * 174.42424 * 20 19 5 42 42 H 1.09001 * 109.58508 * 294.84508 * 20 19 5 43 43 H 0.97002 * 119.99761 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 1 3.9376 -1.3449 -2.0668 7 7 4.1570 0.4899 -1.0749 8 6 5.4206 0.7008 -1.4936 9 8 6.0709 -0.2184 -1.9494 10 6 6.0181 2.0564 -1.3966 11 6 7.3255 2.2875 -1.8261 12 6 7.8363 3.5728 -1.7142 13 6 9.2421 3.8771 -2.1636 14 9 9.7627 4.9213 -1.3917 15 9 10.0391 2.7383 -2.0056 16 7 7.0735 4.5272 -1.2091 17 6 5.8414 4.2744 -0.8125 18 7 5.3138 3.0724 -0.9044 19 6 3.9570 -1.6656 0.0635 20 6 3.4650 -0.9469 1.3237 21 7 2.0225 -0.6996 1.1945 22 6 1.1537 -1.1127 2.1690 23 1 0.1383 -1.3752 1.9112 24 6 1.5782 -1.1941 3.4882 25 7 2.6853 -0.5884 3.8618 26 14 0.5780 -2.1635 4.7329 27 1 1.1101 -3.5467 4.8262 28 1 0.6706 -1.5067 6.0615 29 1 -0.8420 -2.2075 4.3005 30 1 -0.3633 -1.0278 0.0064 31 1 -0.3633 0.5193 0.8867 32 1 -0.3634 0.5082 -0.8932 33 1 1.7660 -0.1668 -2.1368 34 1 1.6031 -1.7253 -1.2919 35 1 3.6379 1.2239 -0.7106 36 1 7.9241 1.4870 -2.2350 37 1 9.2324 4.1711 -3.2132 38 1 5.2464 5.0784 -0.4051 39 1 3.4984 -2.6528 0.0052 40 1 5.0413 -1.7695 0.1038 41 1 3.6518 -1.5717 2.1972 42 1 3.9903 0.0021 1.4317 43 1 2.9820 -0.6456 4.7836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947445308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = -60.256995 kcal Electronic energy + Delta-G solvation = -29906.066828 eV Core-core repulsion = 25430.030676 eV Total energy + Delta-G solvation = -4476.036152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.43880 -47.44145 -41.58874 -39.72449 -37.74895 -34.77186 -34.31943 -32.84068 -32.37033 -31.24621 -29.70358 -28.07392 -26.49620 -25.53370 -24.83231 -24.00230 -22.14231 -21.32492 -20.63620 -18.94921 -18.70325 -18.38694 -18.00850 -17.27727 -16.51924 -16.05221 -15.89599 -15.72365 -15.52216 -15.26367 -14.96828 -14.51156 -14.24123 -14.00378 -13.96943 -13.76146 -13.74431 -13.32567 -13.18232 -12.89977 -12.51160 -12.06129 -11.90158 -11.47859 -11.41890 -11.25597 -11.16279 -11.03821 -10.73271 -10.69596 -10.44730 -10.40522 -10.18222 -10.17469 -10.11093 -9.73549 -9.67778 -9.34397 -8.77189 -8.48440 -6.66475 -5.80103 -3.24380 0.10563 0.31719 2.58063 2.71486 2.97376 3.36046 3.43455 3.44375 3.45932 3.55117 3.60032 3.83922 4.20844 4.40800 4.46670 4.53373 4.59757 4.99963 5.14079 5.26922 5.32015 5.32679 5.54554 5.60483 5.73816 5.91434 6.06448 6.15275 6.26055 6.29751 6.32423 6.40547 6.49154 6.54480 6.67189 6.84897 6.96887 7.02655 7.32822 7.42492 7.63421 7.66978 7.80514 8.18535 8.43585 9.19250 9.82872 10.39553 11.28124 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002780 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.388769 B =10069.985850 C =10489.890301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.139 4.139 5 C 0.151 3.849 6 H 0.077 0.923 7 N -0.682 5.682 8 C 0.565 3.435 9 O -0.530 6.530 10 C 0.148 3.852 11 C -0.143 4.143 12 C 0.095 3.905 13 C 0.331 3.669 14 F -0.181 7.181 15 F -0.187 7.187 16 N -0.481 5.481 17 C 0.304 3.696 18 N -0.477 5.477 19 C -0.154 4.154 20 C 0.175 3.825 21 N -0.586 5.586 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.170 0.830 37 H 0.138 0.862 38 H 0.213 0.787 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.018 0.982 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 8.773 -14.653 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.039 0.961 4 C -0.179 4.179 5 C 0.047 3.953 6 H 0.095 0.905 7 N -0.333 5.333 8 C 0.347 3.653 9 O -0.406 6.406 10 C -0.001 4.001 11 C -0.165 4.165 12 C -0.054 4.054 13 C 0.276 3.724 14 F -0.162 7.162 15 F -0.168 7.168 16 N -0.196 5.196 17 C 0.016 3.984 18 N -0.193 5.193 19 C -0.195 4.195 20 C 0.049 3.951 21 N -0.310 5.310 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.195 4.195 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.252 0.748 36 H 0.187 0.813 37 H 0.155 0.845 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.963 8.810 -14.396 18.662 hybrid contribution -0.077 -0.700 0.832 1.090 sum 7.886 8.110 -13.563 17.661 Atomic orbital electron populations 1.21794 0.95742 1.01563 1.00289 1.20398 0.93274 0.93194 0.87138 0.96054 1.22381 0.93476 1.02569 0.99441 1.21057 0.93413 0.81631 0.99164 0.90531 1.46061 1.13090 1.13511 1.60666 1.17648 0.82727 0.85561 0.79341 1.90788 1.61144 1.42355 1.46307 1.21879 0.91205 0.94379 0.92667 1.22665 0.96650 0.98299 0.98920 1.22181 0.96755 0.90554 0.95908 1.20036 0.81869 0.74143 0.96305 1.93065 1.87479 1.57513 1.78192 1.93064 1.74980 1.51707 1.97051 1.68025 1.06837 1.35510 1.09193 1.25134 0.88211 0.93214 0.91866 1.68443 1.38048 1.00661 1.12164 1.22580 1.00001 0.99554 0.97319 1.20702 0.83294 0.97076 0.93991 1.44128 1.02916 1.64960 1.18951 1.19175 0.95100 1.37781 0.86100 0.91205 1.25088 0.97918 0.99498 0.96980 1.70029 1.24352 1.43432 1.16708 0.86315 0.79779 0.79888 0.81002 1.21544 1.21866 1.20407 0.92650 0.91905 0.94297 0.92460 0.90362 0.74828 0.81280 0.84459 0.77104 0.91413 0.92716 0.89679 0.96405 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.95 37.16 0.30 -2.09 16 2 C 0.17 3.16 3.20 -67.60 -0.22 2.95 16 3 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 4 C -0.14 -2.21 5.07 -26.61 -0.13 -2.35 16 5 C 0.15 2.50 2.78 -67.89 -0.19 2.31 16 6 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 7 N -0.68 -10.91 4.26 -54.52 -0.23 -11.15 16 8 C 0.56 8.96 7.79 -12.05 -0.09 8.86 16 9 O -0.53 -9.40 16.09 5.38 0.09 -9.31 16 10 C 0.15 2.02 6.79 -82.63 -0.56 1.46 16 11 C -0.14 -1.65 9.07 -38.90 -0.35 -2.01 16 12 C 0.10 1.00 6.61 -82.24 -0.54 0.46 16 13 C 0.33 2.68 5.74 36.01 0.21 2.88 16 14 F -0.18 -1.85 17.09 2.25 0.04 -1.81 16 15 F -0.19 -1.76 16.56 2.25 0.04 -1.72 16 16 N -0.48 -5.35 10.08 -10.81 -0.11 -5.46 16 17 C 0.30 3.27 12.28 -92.26 -1.13 2.13 16 18 N -0.48 -6.19 9.70 -11.14 -0.11 -6.30 16 19 C -0.15 -2.95 5.77 -26.61 -0.15 -3.11 16 20 C 0.18 4.04 5.03 -3.71 -0.02 4.02 16 21 N -0.59 -13.65 2.99 -164.77 -0.49 -14.14 16 22 C -0.25 -6.51 8.58 -15.06 -0.13 -6.64 16 23 H 0.07 1.76 6.22 -52.49 -0.33 1.44 16 24 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 25 N -0.90 -25.60 11.25 55.49 0.62 -24.98 16 26 Si 0.90 21.27 29.58 -169.99 -5.03 16.24 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H 0.05 0.99 7.40 -51.92 -0.38 0.60 16 31 H 0.06 1.20 7.66 -51.93 -0.40 0.81 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.41 6.64 6.25 -40.82 -0.26 6.38 16 36 H 0.17 1.80 7.37 -52.49 -0.39 1.41 16 37 H 0.14 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.21 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 2.25 6.14 -51.93 -0.32 1.93 16 42 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -30.98 358.74 -8.19 -39.17 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.30 Total: 5.13 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -3.11 Total: 8.92 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.32 Total: -62.02 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.98 -8.19 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947445308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.088 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds