Wall clock time and date at job start Sat Apr 11 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58215 * 2 1 4 4 C 1.53196 * 109.69891 * 239.64970 * 2 1 3 5 5 C 1.53042 * 109.30981 * 294.76907 * 4 2 1 6 6 H 1.09004 * 109.45519 * 58.64976 * 5 4 2 7 7 N 1.46499 * 109.45830 * 178.61659 * 5 4 2 8 8 C 1.34781 * 120.00190 * 205.00599 * 7 5 4 9 9 O 1.21285 * 119.99653 * 359.97438 * 8 7 5 10 10 C 1.50691 * 120.00059 * 180.02562 * 8 7 5 11 11 C 1.50704 * 109.46925 * 179.97438 * 10 8 7 12 12 C 1.35312 * 126.04259 * 99.71682 * 11 10 8 13 13 N 1.34956 * 107.76402 * 179.89818 * 12 11 10 14 14 C 1.46490 * 126.02445 * 180.10615 * 13 12 11 15 15 N 1.40084 * 107.94487 * 0.36071 * 13 12 11 16 16 C 1.30897 * 108.20669 * 359.77533 * 15 13 12 17 17 Cl 1.73592 * 125.91529 * 180.02562 * 16 15 13 18 18 C 1.53039 * 109.54227 * 298.63919 * 5 4 2 19 19 C 1.52760 * 109.38104 * 61.24015 * 18 5 4 20 20 N 1.46919 * 109.59219 * 120.28630 * 2 1 3 21 21 C 1.36941 * 120.62992 * 246.29708 * 20 2 1 22 22 H 1.07996 * 120.00020 * 331.91171 * 21 20 2 23 23 C 1.38812 * 119.99995 * 151.90765 * 21 20 2 24 24 N 1.31621 * 119.99722 * 343.22679 * 23 21 20 25 25 Si 1.86797 * 120.00136 * 163.22713 * 23 21 20 26 26 H 1.48501 * 109.46972 * 60.00030 * 25 23 21 27 27 H 1.48503 * 109.47012 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47071 * 299.99984 * 25 23 21 29 29 H 1.09008 * 109.46781 * 299.71191 * 1 2 3 30 30 H 1.08997 * 109.47864 * 59.71429 * 1 2 3 31 31 H 1.09004 * 109.46827 * 179.72168 * 1 2 3 32 32 H 1.08998 * 109.50167 * 54.72557 * 4 2 1 33 33 H 1.09001 * 109.49587 * 174.78904 * 4 2 1 34 34 H 0.97001 * 120.00278 * 24.99845 * 7 5 4 35 35 H 1.09003 * 109.47290 * 299.99113 * 10 8 7 36 36 H 1.08995 * 109.47527 * 59.99722 * 10 8 7 37 37 H 1.07998 * 126.12053 * 0.02562 * 12 11 10 38 38 H 1.09004 * 109.46890 * 270.27798 * 14 13 12 39 39 H 1.09003 * 109.47833 * 30.27735 * 14 13 12 40 40 H 1.08999 * 109.47355 * 150.27963 * 14 13 12 41 41 H 1.08997 * 109.49835 * 181.31796 * 18 5 4 42 42 H 1.08999 * 109.49752 * 301.41513 * 18 5 4 43 43 H 1.09003 * 109.50686 * 185.71284 * 19 18 5 44 44 H 1.08998 * 109.43572 * 65.42623 * 19 18 5 45 45 H 0.97006 * 119.99968 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2446 5 6 1.6473 -2.2043 -1.1692 6 1 0.5624 -2.2838 -1.0993 7 7 2.1109 -2.8975 -2.3736 8 6 1.4863 -4.0172 -2.7894 9 8 0.5407 -4.4511 -2.1660 10 6 1.9636 -4.7305 -4.0280 11 6 1.1030 -5.9433 -4.2723 12 6 0.0788 -6.0285 -5.1525 13 7 -0.4312 -7.2753 -5.0712 14 6 -1.5536 -7.7997 -5.8530 15 7 0.2981 -7.9778 -4.1033 16 6 1.2178 -7.1788 -3.6245 17 17 2.3794 -7.5819 -2.3991 18 6 2.2858 -2.8448 0.0654 19 6 1.7769 -2.1411 1.3221 20 7 2.0227 -0.6980 1.1952 21 6 2.7029 -0.0177 2.1698 22 1 3.2721 0.8641 1.9156 23 6 2.6607 -0.4616 3.4843 24 7 1.7304 -1.3127 3.8620 25 14 3.9241 0.1489 4.7173 26 1 3.8280 1.6262 4.8343 27 1 3.6634 -0.4710 6.0414 28 1 5.2858 -0.2236 4.2564 29 1 -0.3633 0.5094 0.8926 30 1 -0.3635 0.5182 -0.8873 31 1 -0.3633 -1.0277 -0.0050 32 1 1.6104 -0.2791 -2.1367 33 1 3.1324 -0.6470 -1.2897 34 1 2.8673 -2.5506 -2.8720 35 1 1.8958 -4.0583 -4.8833 36 1 2.9992 -5.0418 -3.8917 37 1 -0.2671 -5.2405 -5.8049 38 1 -2.4864 -7.6104 -5.3216 39 1 -1.5822 -7.3058 -6.8243 40 1 -1.4277 -8.8730 -5.9949 41 1 2.0202 -3.9012 0.1057 42 1 3.3696 -2.7436 0.0083 43 1 2.3053 -2.5263 2.1942 44 1 0.7075 -2.3215 1.4310 45 1 1.7006 -1.6227 4.7807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947722593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:50 Heat of formation + Delta-G solvation = 55.801681 kcal Electronic energy + Delta-G solvation = -27596.367653 eV Core-core repulsion = 23677.160864 eV Total energy + Delta-G solvation = -3919.206789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55413 -39.52763 -37.66153 -36.79399 -34.38351 -33.73309 -32.52177 -32.04021 -30.73447 -29.60992 -28.41598 -26.89012 -25.91374 -24.18852 -22.11307 -21.75182 -21.50428 -20.80743 -19.99014 -18.35801 -17.33978 -16.96744 -16.48449 -15.81786 -15.68202 -15.26705 -14.96078 -14.64744 -13.94075 -13.87624 -13.70357 -13.65766 -13.58251 -13.25755 -12.93201 -12.78017 -12.66606 -12.38087 -12.19905 -11.91230 -11.76014 -11.60277 -11.35860 -11.01819 -10.88510 -10.73335 -10.65404 -10.55760 -10.28836 -10.15997 -9.98454 -9.65893 -9.64047 -9.44700 -9.28535 -8.63169 -8.60747 -8.34557 -6.63614 -5.74221 -3.17252 1.36986 1.52758 2.29765 2.67313 2.94678 3.40683 3.47097 3.47634 3.59638 4.21011 4.48289 4.52062 4.78053 4.78693 4.95641 5.03881 5.12338 5.31602 5.37422 5.39510 5.43929 5.47256 5.66105 5.72761 5.85772 5.98524 6.08465 6.12968 6.30182 6.39042 6.52348 6.53214 6.62538 6.63440 6.73452 6.87579 6.95489 7.04178 7.20726 7.23194 7.45533 7.74611 7.83651 7.85548 8.50063 8.57298 9.25749 9.89343 10.46333 11.33972 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.002618 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.011682 B =10692.310480 C =11412.474161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.064 0.936 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.083 0.917 7 N -0.728 5.728 8 C 0.509 3.491 9 O -0.529 6.529 10 C -0.065 4.065 11 C -0.201 4.201 12 C 0.076 3.924 13 N -0.365 5.365 14 C 0.103 3.897 15 N -0.284 5.284 16 C 0.143 3.857 17 Cl 0.009 6.991 18 C -0.146 4.146 19 C 0.174 3.826 20 N -0.585 5.585 21 C -0.254 4.254 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.182 0.818 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.020 0.980 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -8.901 -23.512 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 H 0.082 0.918 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.101 0.899 7 N -0.378 5.378 8 C 0.294 3.706 9 O -0.405 6.405 10 C -0.106 4.106 11 C -0.213 4.213 12 C -0.070 4.070 13 N -0.148 5.148 14 C -0.038 4.038 15 N -0.109 5.109 16 C -0.049 4.049 17 Cl 0.037 6.963 18 C -0.187 4.187 19 C 0.048 3.952 20 N -0.306 5.306 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.199 0.801 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.038 0.962 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.056 -10.544 -22.785 25.292 hybrid contribution 1.323 1.148 0.573 1.843 sum -1.733 -9.396 -22.212 24.180 Atomic orbital electron populations 1.22299 0.98775 1.01083 0.99974 1.20430 0.91737 0.95063 0.86582 0.91779 1.22288 1.01093 0.94347 0.99433 1.21048 0.99657 0.91152 0.83368 0.89866 1.46321 1.34905 1.27297 1.29326 1.20503 0.83303 0.80766 0.86064 1.90724 1.27869 1.65041 1.56864 1.19955 0.99612 0.93776 0.97271 1.19215 1.03427 0.95335 1.03366 1.22268 0.94985 0.88781 1.00977 1.48160 1.26884 1.09119 1.30669 1.21931 0.85871 1.01676 0.94279 1.77350 1.07760 1.19736 1.06070 1.22486 0.94519 0.93133 0.94756 1.98405 1.53417 1.94162 1.50297 1.22479 1.00084 0.99229 0.96860 1.20635 0.97708 0.82857 0.93977 1.44131 1.63997 1.03327 1.19171 1.19105 1.22092 1.10458 0.86662 0.91784 1.25057 0.97671 0.99956 0.96830 1.70030 1.31855 1.35540 1.16946 0.86394 0.81593 0.78320 0.80564 1.20939 1.21700 1.21086 0.92663 0.94586 0.93221 0.92713 0.91939 0.77363 0.88175 0.88123 0.80140 0.90345 0.89063 0.89059 0.92884 0.92803 0.89479 0.96219 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.04 37.16 0.34 -2.79 16 2 C 0.17 3.43 3.28 -67.60 -0.22 3.21 16 3 H 0.06 1.29 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.16 5.03 -26.61 -0.13 -2.30 16 5 C 0.15 2.61 2.21 -67.89 -0.15 2.46 16 6 H 0.08 1.64 5.94 -51.93 -0.31 1.33 16 7 N -0.73 -9.84 5.08 -53.77 -0.27 -10.12 16 8 C 0.51 7.27 7.79 -10.99 -0.09 7.18 16 9 O -0.53 -10.06 15.70 5.55 0.09 -9.98 16 10 C -0.06 -0.65 6.04 -29.04 -0.18 -0.83 16 11 C -0.20 -2.38 4.60 -105.01 -0.48 -2.86 16 12 C 0.08 0.72 11.40 -17.22 -0.20 0.53 16 13 N -0.37 -3.75 4.01 -68.17 -0.27 -4.02 16 14 C 0.10 0.54 11.47 59.84 0.69 1.23 16 15 N -0.28 -3.94 12.58 32.94 0.41 -3.52 16 16 C 0.14 1.99 7.84 -17.30 -0.14 1.86 16 17 Cl 0.01 0.13 29.16 -51.86 -1.51 -1.38 16 18 C -0.15 -2.96 5.64 -26.83 -0.15 -3.11 16 19 C 0.17 4.26 4.86 -3.93 -0.02 4.24 16 20 N -0.58 -14.34 2.70 -165.04 -0.45 -14.79 16 21 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 22 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 23 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 24 N -0.90 -26.34 11.20 55.49 0.62 -25.72 16 25 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.01 5.76 -51.93 -0.30 0.71 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.39 4.02 8.60 -40.82 -0.35 3.67 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 44 H 0.02 0.52 7.52 -51.93 -0.39 0.13 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -35.25 380.65 -8.33 -43.58 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.70 Total: 1.68 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.96 Total: 1.82 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.04 Total: -58.17 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.51 Total: -1.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.25 -8.33 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947722593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.380 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds