Wall clock time and date at job start Sat Apr 11 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58215 * 2 1 4 4 C 1.53196 * 109.69891 * 239.64970 * 2 1 3 5 5 C 1.53042 * 109.30981 * 294.76907 * 4 2 1 6 6 H 1.09004 * 109.45519 * 58.64976 * 5 4 2 7 7 N 1.46499 * 109.45830 * 178.61659 * 5 4 2 8 8 C 1.34781 * 120.00190 * 205.00599 * 7 5 4 9 9 O 1.21285 * 119.99653 * 359.97438 * 8 7 5 10 10 C 1.50691 * 120.00059 * 180.02562 * 8 7 5 11 11 C 1.50704 * 109.46925 * 179.97438 * 10 8 7 12 12 C 1.35312 * 126.04259 * 99.71682 * 11 10 8 13 13 N 1.34956 * 107.76402 * 179.89818 * 12 11 10 14 14 C 1.46490 * 126.02445 * 180.10615 * 13 12 11 15 15 N 1.40084 * 107.94487 * 0.36071 * 13 12 11 16 16 C 1.30897 * 108.20669 * 359.77533 * 15 13 12 17 17 Cl 1.73592 * 125.91529 * 180.02562 * 16 15 13 18 18 C 1.53039 * 109.54227 * 298.63919 * 5 4 2 19 19 C 1.52760 * 109.38104 * 61.24015 * 18 5 4 20 20 N 1.46919 * 109.59219 * 120.28630 * 2 1 3 21 21 C 1.36941 * 120.62992 * 246.29708 * 20 2 1 22 22 H 1.07996 * 120.00020 * 331.91171 * 21 20 2 23 23 C 1.38812 * 119.99995 * 151.90765 * 21 20 2 24 24 N 1.31621 * 119.99722 * 343.22679 * 23 21 20 25 25 Si 1.86797 * 120.00136 * 163.22713 * 23 21 20 26 26 H 1.48501 * 109.46972 * 60.00030 * 25 23 21 27 27 H 1.48503 * 109.47012 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47071 * 299.99984 * 25 23 21 29 29 H 1.09008 * 109.46781 * 299.71191 * 1 2 3 30 30 H 1.08997 * 109.47864 * 59.71429 * 1 2 3 31 31 H 1.09004 * 109.46827 * 179.72168 * 1 2 3 32 32 H 1.08998 * 109.50167 * 54.72557 * 4 2 1 33 33 H 1.09001 * 109.49587 * 174.78904 * 4 2 1 34 34 H 0.97001 * 120.00278 * 24.99845 * 7 5 4 35 35 H 1.09003 * 109.47290 * 299.99113 * 10 8 7 36 36 H 1.08995 * 109.47527 * 59.99722 * 10 8 7 37 37 H 1.07998 * 126.12053 * 0.02562 * 12 11 10 38 38 H 1.09004 * 109.46890 * 270.27798 * 14 13 12 39 39 H 1.09003 * 109.47833 * 30.27735 * 14 13 12 40 40 H 1.08999 * 109.47355 * 150.27963 * 14 13 12 41 41 H 1.08997 * 109.49835 * 181.31796 * 18 5 4 42 42 H 1.08999 * 109.49752 * 301.41513 * 18 5 4 43 43 H 1.09003 * 109.50686 * 185.71284 * 19 18 5 44 44 H 1.08998 * 109.43572 * 65.42623 * 19 18 5 45 45 H 0.97006 * 119.99968 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2446 5 6 1.6473 -2.2043 -1.1692 6 1 0.5624 -2.2838 -1.0993 7 7 2.1109 -2.8975 -2.3736 8 6 1.4863 -4.0172 -2.7894 9 8 0.5407 -4.4511 -2.1660 10 6 1.9636 -4.7305 -4.0280 11 6 1.1030 -5.9433 -4.2723 12 6 0.0788 -6.0285 -5.1525 13 7 -0.4312 -7.2753 -5.0712 14 6 -1.5536 -7.7997 -5.8530 15 7 0.2981 -7.9778 -4.1033 16 6 1.2178 -7.1788 -3.6245 17 17 2.3794 -7.5819 -2.3991 18 6 2.2858 -2.8448 0.0654 19 6 1.7769 -2.1411 1.3221 20 7 2.0227 -0.6980 1.1952 21 6 2.7029 -0.0177 2.1698 22 1 3.2721 0.8641 1.9156 23 6 2.6607 -0.4616 3.4843 24 7 1.7304 -1.3127 3.8620 25 14 3.9241 0.1489 4.7173 26 1 3.8280 1.6262 4.8343 27 1 3.6634 -0.4710 6.0414 28 1 5.2858 -0.2236 4.2564 29 1 -0.3633 0.5094 0.8926 30 1 -0.3635 0.5182 -0.8873 31 1 -0.3633 -1.0277 -0.0050 32 1 1.6104 -0.2791 -2.1367 33 1 3.1324 -0.6470 -1.2897 34 1 2.8673 -2.5506 -2.8720 35 1 1.8958 -4.0583 -4.8833 36 1 2.9992 -5.0418 -3.8917 37 1 -0.2671 -5.2405 -5.8049 38 1 -2.4864 -7.6104 -5.3216 39 1 -1.5822 -7.3058 -6.8243 40 1 -1.4277 -8.8730 -5.9949 41 1 2.0202 -3.9012 0.1057 42 1 3.3696 -2.7436 0.0083 43 1 2.3053 -2.5263 2.1942 44 1 0.7075 -2.3215 1.4310 45 1 1.7006 -1.6227 4.7807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947722593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:49 Heat of formation + Delta-G solvation = 31.383064 kcal Electronic energy + Delta-G solvation = -27597.426524 eV Core-core repulsion = 23677.160864 eV Total energy + Delta-G solvation = -3920.265660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.34784 -40.79726 -39.20025 -37.76303 -35.91257 -34.48723 -34.23856 -32.99559 -32.36980 -31.26467 -29.31450 -28.38245 -26.75528 -26.02028 -23.74092 -23.33346 -22.27138 -21.86201 -21.06367 -19.99375 -18.81006 -17.97096 -17.74474 -17.21770 -16.58190 -16.41212 -16.15023 -15.95031 -15.55072 -15.48070 -15.00211 -14.68945 -14.52575 -14.35911 -14.19524 -14.04944 -13.96402 -13.83661 -13.28019 -13.11703 -12.89489 -12.78328 -12.61192 -12.58694 -12.52214 -12.50033 -12.25959 -12.01355 -11.99488 -11.72852 -11.53843 -11.43538 -11.07571 -10.72741 -10.52628 -10.28703 -9.84358 -9.43733 -8.65706 -7.83874 -5.29375 0.52091 0.75855 1.42054 1.47533 1.50410 1.56688 1.87159 1.99517 2.50111 2.53182 3.31806 3.57038 3.65072 3.87046 3.91696 4.09312 4.16130 4.31763 4.36082 4.40213 4.44395 4.49689 4.56265 4.61105 4.70952 4.73563 4.74542 4.82148 4.88072 4.97340 5.00573 5.15018 5.16872 5.20289 5.24510 5.37732 5.47967 5.54837 5.69535 5.72903 5.78958 6.01677 6.41401 6.42760 6.81278 7.17597 7.52418 7.90304 8.42643 9.22562 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.002618 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.011682 B =10692.310480 C =11412.474161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.116 4.116 5 C 0.164 3.836 6 H 0.059 0.941 7 N -0.714 5.714 8 C 0.507 3.493 9 O -0.582 6.582 10 C -0.053 4.053 11 C -0.228 4.228 12 C 0.091 3.909 13 N -0.363 5.363 14 C 0.092 3.908 15 N -0.328 5.328 16 C 0.119 3.881 17 Cl -0.008 7.008 18 C -0.131 4.131 19 C 0.187 3.813 20 N -0.599 5.599 21 C -0.257 4.257 22 H 0.073 0.927 23 C -0.054 4.054 24 N -0.938 5.938 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.300 1.300 28 H -0.277 1.277 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.147 0.853 36 H 0.114 0.886 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.058 0.942 43 H 0.048 0.952 44 H -0.014 1.014 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -7.192 -27.528 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 H 0.088 0.912 4 C -0.155 4.155 5 C 0.059 3.941 6 H 0.077 0.923 7 N -0.366 5.366 8 C 0.294 3.706 9 O -0.461 6.461 10 C -0.094 4.094 11 C -0.240 4.240 12 C -0.056 4.056 13 N -0.146 5.146 14 C -0.047 4.047 15 N -0.155 5.155 16 C -0.072 4.072 17 Cl 0.020 6.980 18 C -0.172 4.172 19 C 0.060 3.940 20 N -0.322 5.322 21 C -0.387 4.387 22 H 0.091 0.909 23 C -0.250 4.250 24 N -0.584 5.584 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.227 1.227 28 H -0.203 1.203 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.165 0.835 36 H 0.132 0.868 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.149 0.851 40 H 0.111 0.889 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.004 0.996 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.331 -8.819 -26.869 28.375 hybrid contribution 0.980 0.599 1.732 2.078 sum -1.351 -8.220 -25.137 26.481 Atomic orbital electron populations 1.22179 0.98325 1.00130 1.00504 1.20735 0.92116 0.95547 0.86394 0.91199 1.22113 1.01854 0.92873 0.98701 1.20607 0.97962 0.92027 0.83499 0.92266 1.46039 1.35494 1.27072 1.27973 1.21329 0.82262 0.80206 0.86771 1.90717 1.30378 1.66259 1.58717 1.19994 0.99576 0.93466 0.96316 1.19556 1.05061 0.95132 1.04279 1.23019 0.93338 0.89100 1.00162 1.48607 1.26941 1.09411 1.29635 1.22353 0.84457 1.02380 0.95482 1.77235 1.08865 1.21432 1.07924 1.22748 0.94833 0.94481 0.95098 1.98383 1.54090 1.94370 1.51195 1.22233 1.00231 0.98016 0.96684 1.20277 0.95166 0.83829 0.94704 1.44345 1.64351 1.03353 1.20111 1.19510 1.21686 1.10258 0.87260 0.90946 1.25840 0.99522 1.00769 0.98825 1.70213 1.33913 1.37509 1.16760 0.85363 0.79361 0.78080 0.77779 1.19838 1.22657 1.20346 0.95523 0.90497 0.94946 0.88719 0.90815 0.74806 0.83492 0.86842 0.75519 0.89891 0.85083 0.88920 0.94376 0.92305 0.93329 0.99621 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 9.04 71.98 0.65 -5.12 16 2 C 0.16 6.18 3.28 44.98 0.15 6.32 16 3 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 4 C -0.12 -3.42 5.03 30.67 0.15 -3.27 16 5 C 0.16 5.42 2.21 45.02 0.10 5.52 16 6 H 0.06 2.31 5.94 -2.38 -0.01 2.29 16 7 N -0.71 -17.20 5.08 -442.40 -2.25 -19.44 16 8 C 0.51 13.38 7.79 87.65 0.68 14.06 16 9 O -0.58 -21.94 15.70 -3.04 -0.05 -21.99 16 10 C -0.05 -0.88 6.04 29.10 0.18 -0.70 16 11 C -0.23 -4.89 4.60 -20.12 -0.09 -4.98 16 12 C 0.09 1.42 11.40 83.54 0.95 2.37 16 13 N -0.36 -6.70 4.01 -369.58 -1.48 -8.18 16 14 C 0.09 0.73 11.47 127.77 1.47 2.19 16 15 N -0.33 -9.04 12.58 -49.69 -0.62 -9.67 16 16 C 0.12 3.28 7.84 85.25 0.67 3.95 16 17 Cl -0.01 -0.23 29.16 -2.72 -0.08 -0.31 16 18 C -0.13 -5.40 5.64 30.53 0.17 -5.23 16 19 C 0.19 9.57 4.86 86.22 0.42 9.99 16 20 N -0.60 -29.77 2.70 -676.06 -1.83 -31.60 16 21 C -0.26 -14.02 9.58 84.03 0.81 -13.21 16 22 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 23 C -0.05 -3.09 4.92 84.86 0.42 -2.68 16 24 N -0.94 -57.49 11.20 21.65 0.24 -57.25 16 25 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 29 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.32 5.76 -2.39 -0.01 1.31 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.41 6.60 8.60 -92.71 -0.80 5.80 16 35 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.23 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.05 2.84 6.07 -2.39 -0.01 2.82 16 44 H -0.01 -0.81 7.52 -2.39 -0.02 -0.83 16 45 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -83.56 380.65 2.89 -80.67 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.21 Total: 10.99 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.72 Total: 9.22 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.94 Total: -126.14 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -83.56 2.89 -80.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947722593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.052 kcal (2) G-P(sol) polarization free energy of solvation -83.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds