Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46048 * 2 1 4 4 C 1.53069 * 109.45400 * 119.82082 * 2 1 3 5 5 C 1.53189 * 109.29639 * 181.23920 * 4 2 1 6 6 N 1.46924 * 108.89556 * 305.58015 * 5 4 2 7 7 C 1.36937 * 120.63174 * 233.55611 * 6 5 4 8 8 H 1.07993 * 119.99914 * 152.61538 * 7 6 5 9 9 C 1.38811 * 119.99546 * 332.61691 * 7 6 5 10 10 N 1.31624 * 119.99431 * 159.34986 * 9 7 6 11 11 Si 1.86794 * 120.00380 * 339.34819 * 9 7 6 12 12 H 1.48497 * 109.47178 * 92.91033 * 11 9 7 13 13 H 1.48508 * 109.47073 * 212.90567 * 11 9 7 14 14 H 1.48498 * 109.47289 * 332.90509 * 11 9 7 15 15 C 1.46926 * 118.73724 * 53.53231 * 6 5 4 16 16 C 1.53044 * 109.45653 * 240.02982 * 2 1 3 17 17 H 1.09002 * 109.52290 * 58.65021 * 16 2 1 18 18 N 1.46492 * 109.49967 * 298.56495 * 16 2 1 19 19 C 1.34780 * 119.99974 * 155.16126 * 18 16 2 20 20 O 1.21480 * 119.99971 * 0.02562 * 19 18 16 21 21 C 1.48458 * 120.00021 * 180.02562 * 19 18 16 22 22 C 1.39530 * 120.54890 * 180.02562 * 21 19 18 23 23 C 1.38759 * 118.26420 * 179.97438 * 22 21 19 24 24 C 1.50699 * 120.43026 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.47528 * 210.00337 * 24 23 22 26 26 F 1.39902 * 109.46792 * 329.99876 * 24 23 22 27 27 N 1.32208 * 119.14506 * 0.02562 * 23 22 21 28 28 C 1.31876 * 121.03930 * 359.97438 * 27 23 22 29 29 N 1.31590 * 121.91577 * 359.72091 * 28 27 23 30 30 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46724 * 299.96839 * 1 2 3 32 32 H 1.08997 * 109.47194 * 59.96597 * 1 2 3 33 33 H 1.09001 * 109.39292 * 61.36461 * 4 2 1 34 34 H 1.09008 * 109.62278 * 301.25860 * 4 2 1 35 35 H 1.09001 * 109.58833 * 185.71877 * 5 4 2 36 36 H 1.09004 * 109.58042 * 65.43741 * 5 4 2 37 37 H 0.97000 * 119.99817 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58941 * 66.18420 * 15 6 5 39 39 H 1.09004 * 109.58356 * 186.60499 * 15 6 5 40 40 H 0.97000 * 120.00392 * 335.16659 * 18 16 2 41 41 H 1.08004 * 120.86995 * 0.02562 * 22 21 19 42 42 H 1.08993 * 109.47367 * 90.00179 * 24 23 22 43 43 H 1.08001 * 119.04387 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7177 1.2522 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9758 -2.2740 0.0000 8 1 5.0118 -2.9634 -0.8306 9 6 5.8497 -2.4270 1.0675 10 7 6.4256 -3.5905 1.2849 11 14 6.2084 -0.9820 2.1956 12 1 5.2791 -1.0153 3.3534 13 1 7.6087 -1.0696 2.6822 14 1 6.0226 0.2876 1.4481 15 6 3.5713 -0.6887 -1.2643 16 6 2.0398 -0.7209 -1.2501 17 1 1.6572 -0.2213 -2.1401 18 7 1.5802 -2.1117 -1.2342 19 6 1.4546 -2.7932 -2.3902 20 8 1.7232 -2.2543 -3.4452 21 6 0.9882 -4.2026 -2.3741 22 6 0.8547 -4.9190 -3.5639 23 6 0.4155 -6.2334 -3.4938 24 6 0.2533 -7.0520 -4.7486 25 9 -0.7683 -7.9899 -4.5648 26 9 -0.0742 -6.2091 -5.8161 27 7 0.1402 -6.7580 -2.3119 28 6 0.2774 -6.0526 -1.2061 29 7 0.6962 -4.8053 -1.2242 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8896 33 1 1.6958 -1.7520 1.2419 34 1 1.6594 -0.2161 2.1421 35 1 3.9418 -1.2845 2.0984 36 1 3.9164 0.3402 1.3684 37 1 7.0360 -3.6976 2.0311 38 1 3.9143 0.3408 -1.3675 39 1 3.9417 -1.2847 -2.0984 40 1 1.3660 -2.5422 -0.3917 41 1 1.0879 -4.4627 -4.5147 42 1 1.1869 -7.5699 -4.9678 43 1 0.0437 -6.5135 -0.2578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966908376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = -57.081679 kcal Electronic energy + Delta-G solvation = -30314.884222 eV Core-core repulsion = 25838.985762 eV Total energy + Delta-G solvation = -4475.898460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.37271 -47.37385 -41.48151 -39.79159 -37.90577 -34.68511 -34.37170 -32.87817 -32.71323 -31.45535 -29.81132 -28.01308 -27.66195 -25.37738 -24.05477 -23.73117 -22.78628 -21.41502 -21.05068 -19.02806 -18.79660 -18.34351 -17.92520 -17.24640 -16.75430 -16.17209 -15.79820 -15.64759 -15.47964 -15.27821 -15.10747 -14.53329 -14.25086 -14.12790 -13.81518 -13.78565 -13.68779 -13.49678 -13.44011 -13.20785 -12.60224 -12.35507 -12.00396 -11.97950 -11.69161 -11.56689 -11.31845 -11.27943 -11.03642 -10.72433 -10.68068 -10.36526 -10.26213 -10.06185 -9.96479 -9.75791 -9.57738 -9.46839 -8.95759 -8.53194 -6.99676 -5.97987 -3.33916 0.22095 0.42842 2.67432 2.83072 3.05484 3.27978 3.45737 3.47946 3.56845 3.65381 3.70141 3.92797 4.31034 4.49404 4.50530 4.63919 4.68373 4.89156 4.91782 5.07140 5.11949 5.13854 5.25130 5.38770 5.66764 5.68567 5.79561 5.84661 5.91856 6.01480 6.02794 6.16277 6.25875 6.33198 6.41758 6.47255 6.58251 6.59869 6.72295 6.83805 7.52087 7.74895 7.92320 8.28154 8.29026 8.90226 9.68642 10.04901 11.18006 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003408 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.096327 B = 8213.247328 C = 9107.752532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.601 5.601 7 C -0.255 4.255 8 H 0.081 0.919 9 C 0.024 3.976 10 N -0.908 5.908 11 Si 0.884 3.116 12 H -0.289 1.289 13 H -0.305 1.305 14 H -0.271 1.271 15 C 0.137 3.863 16 C 0.130 3.870 17 H 0.086 0.914 18 N -0.670 5.670 19 C 0.567 3.433 20 O -0.532 6.532 21 C 0.151 3.849 22 C -0.142 4.142 23 C 0.096 3.904 24 C 0.331 3.669 25 F -0.183 7.183 26 F -0.188 7.188 27 N -0.482 5.482 28 C 0.303 3.697 29 N -0.476 5.476 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.412 0.588 41 H 0.169 0.831 42 H 0.140 0.860 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 -1.638 -6.726 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.100 0.900 4 C -0.171 4.171 5 C -0.003 4.003 6 N -0.325 5.325 7 C -0.383 4.383 8 H 0.099 0.901 9 C -0.175 4.175 10 N -0.551 5.551 11 Si 0.715 3.285 12 H -0.217 1.217 13 H -0.233 1.233 14 H -0.196 1.196 15 C 0.010 3.990 16 C 0.025 3.975 17 H 0.104 0.896 18 N -0.321 5.321 19 C 0.350 3.650 20 O -0.408 6.408 21 C 0.001 3.999 22 C -0.165 4.165 23 C -0.054 4.054 24 C 0.276 3.724 25 F -0.164 7.164 26 F -0.169 7.169 27 N -0.197 5.197 28 C 0.015 3.985 29 N -0.192 5.192 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.250 0.750 41 H 0.187 0.813 42 H 0.157 0.843 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.934 -1.719 -6.515 16.383 hybrid contribution 0.392 0.775 0.484 0.994 sum -14.542 -0.943 -6.031 15.771 Atomic orbital electron populations 1.21852 0.95415 1.01728 1.01297 1.21326 0.95168 0.99865 0.94936 0.89993 1.22108 0.98577 1.00221 0.96213 1.21374 0.91558 0.97072 0.90267 1.44302 1.48795 1.40294 0.99090 1.18832 1.09689 1.02514 1.07257 0.90100 1.25264 0.97377 0.96627 0.98216 1.69839 1.32634 1.22013 1.30626 0.86945 0.76248 0.84847 0.80507 1.21709 1.23289 1.19598 1.21336 0.90249 0.97416 0.90046 1.21692 0.97258 0.80433 0.98161 0.89567 1.45750 1.63891 1.13627 1.08790 1.17581 0.78822 0.83748 0.84868 1.90782 1.51025 1.68249 1.30794 1.21838 0.93394 0.95790 0.88836 1.22647 0.97835 0.94140 1.01901 1.22140 0.95972 0.92584 0.94680 1.20056 0.90616 0.80953 0.80762 1.93052 1.62729 1.65218 1.95362 1.93054 1.94203 1.72593 1.57065 1.68002 1.14369 1.38877 0.98414 1.25093 0.90565 0.86178 0.96640 1.68422 1.09448 1.12279 1.29026 0.92795 0.92719 0.92943 0.91870 0.92175 0.90830 0.95597 0.92815 0.94724 0.91250 0.74971 0.81340 0.84338 0.77234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.05 37.16 0.34 -1.32 16 2 C -0.09 -1.29 2.47 -90.56 -0.22 -1.51 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -2.06 5.21 -26.60 -0.14 -2.20 16 5 C 0.12 2.49 4.20 -3.71 -0.02 2.47 16 6 N -0.60 -13.50 2.69 -172.32 -0.46 -13.97 16 7 C -0.25 -6.91 10.04 -15.06 -0.15 -7.06 16 8 H 0.08 2.42 8.05 -52.49 -0.42 1.99 16 9 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 10 N -0.91 -27.38 13.97 55.49 0.78 -26.60 16 11 Si 0.88 21.88 24.34 -169.99 -4.14 17.74 16 12 H -0.29 -6.87 6.62 56.52 0.37 -6.49 16 13 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 14 H -0.27 -6.58 6.64 56.52 0.38 -6.21 16 15 C 0.14 2.63 6.12 -3.71 -0.02 2.61 16 16 C 0.13 2.05 2.24 -67.81 -0.15 1.90 16 17 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 18 N -0.67 -10.73 4.25 -54.44 -0.23 -10.96 16 19 C 0.57 9.38 7.80 -12.05 -0.09 9.29 16 20 O -0.53 -9.74 16.09 5.38 0.09 -9.65 16 21 C 0.15 2.22 6.79 -82.63 -0.56 1.66 16 22 C -0.14 -1.81 9.06 -38.91 -0.35 -2.17 16 23 C 0.10 1.11 6.61 -82.24 -0.54 0.56 16 24 C 0.33 3.00 5.74 36.01 0.21 3.21 16 25 F -0.18 -1.96 17.09 2.25 0.04 -1.92 16 26 F -0.19 -1.86 16.56 2.25 0.04 -1.83 16 27 N -0.48 -5.89 10.08 -10.81 -0.11 -6.00 16 28 C 0.30 3.58 12.28 -92.26 -1.13 2.45 16 29 N -0.48 -6.65 9.70 -11.14 -0.11 -6.76 16 30 H 0.05 0.63 7.54 -51.93 -0.39 0.23 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.02 6.41 -51.93 -0.33 0.68 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.07 1.66 4.49 -51.93 -0.23 1.43 16 36 H 0.03 0.52 7.07 -51.93 -0.37 0.16 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 40 H 0.41 6.57 6.03 -40.82 -0.25 6.33 16 41 H 0.17 1.98 7.38 -52.48 -0.39 1.59 16 42 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -32.37 355.68 -7.02 -39.40 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.34 Total: 4.70 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -2.94 Total: 10.48 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.14 Total: -64.28 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.75 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.37 -7.02 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966908376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.685 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds