Wall clock time and date at job start Sat Apr 11 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46048 * 2 1 4 4 C 1.53069 * 109.45400 * 119.82082 * 2 1 3 5 5 C 1.53189 * 109.29639 * 181.23920 * 4 2 1 6 6 N 1.46924 * 108.89556 * 305.58015 * 5 4 2 7 7 C 1.36937 * 120.63174 * 233.55611 * 6 5 4 8 8 H 1.07993 * 119.99914 * 152.61538 * 7 6 5 9 9 C 1.38811 * 119.99546 * 332.61691 * 7 6 5 10 10 N 1.31624 * 119.99431 * 159.34986 * 9 7 6 11 11 Si 1.86794 * 120.00380 * 339.34819 * 9 7 6 12 12 H 1.48497 * 109.47178 * 92.91033 * 11 9 7 13 13 H 1.48508 * 109.47073 * 212.90567 * 11 9 7 14 14 H 1.48498 * 109.47289 * 332.90509 * 11 9 7 15 15 C 1.46926 * 118.73724 * 53.53231 * 6 5 4 16 16 C 1.53044 * 109.45653 * 240.02982 * 2 1 3 17 17 H 1.09002 * 109.52290 * 58.65021 * 16 2 1 18 18 N 1.46492 * 109.49967 * 298.56495 * 16 2 1 19 19 C 1.34780 * 119.99974 * 155.16126 * 18 16 2 20 20 O 1.21480 * 119.99971 * 0.02562 * 19 18 16 21 21 C 1.48458 * 120.00021 * 180.02562 * 19 18 16 22 22 C 1.39530 * 120.54890 * 180.02562 * 21 19 18 23 23 C 1.38759 * 118.26420 * 179.97438 * 22 21 19 24 24 C 1.50699 * 120.43026 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.47528 * 210.00337 * 24 23 22 26 26 F 1.39902 * 109.46792 * 329.99876 * 24 23 22 27 27 N 1.32208 * 119.14506 * 0.02562 * 23 22 21 28 28 C 1.31876 * 121.03930 * 359.97438 * 27 23 22 29 29 N 1.31590 * 121.91577 * 359.72091 * 28 27 23 30 30 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46724 * 299.96839 * 1 2 3 32 32 H 1.08997 * 109.47194 * 59.96597 * 1 2 3 33 33 H 1.09001 * 109.39292 * 61.36461 * 4 2 1 34 34 H 1.09008 * 109.62278 * 301.25860 * 4 2 1 35 35 H 1.09001 * 109.58833 * 185.71877 * 5 4 2 36 36 H 1.09004 * 109.58042 * 65.43741 * 5 4 2 37 37 H 0.97000 * 119.99817 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58941 * 66.18420 * 15 6 5 39 39 H 1.09004 * 109.58356 * 186.60499 * 15 6 5 40 40 H 0.97000 * 120.00392 * 335.16659 * 18 16 2 41 41 H 1.08004 * 120.86995 * 0.02562 * 22 21 19 42 42 H 1.08993 * 109.47367 * 90.00179 * 24 23 22 43 43 H 1.08001 * 119.04387 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7177 1.2522 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9758 -2.2740 0.0000 8 1 5.0118 -2.9634 -0.8306 9 6 5.8497 -2.4270 1.0675 10 7 6.4256 -3.5905 1.2849 11 14 6.2084 -0.9820 2.1956 12 1 5.2791 -1.0153 3.3534 13 1 7.6087 -1.0696 2.6822 14 1 6.0226 0.2876 1.4481 15 6 3.5713 -0.6887 -1.2643 16 6 2.0398 -0.7209 -1.2501 17 1 1.6572 -0.2213 -2.1401 18 7 1.5802 -2.1117 -1.2342 19 6 1.4546 -2.7932 -2.3902 20 8 1.7232 -2.2543 -3.4452 21 6 0.9882 -4.2026 -2.3741 22 6 0.8547 -4.9190 -3.5639 23 6 0.4155 -6.2334 -3.4938 24 6 0.2533 -7.0520 -4.7486 25 9 -0.7683 -7.9899 -4.5648 26 9 -0.0742 -6.2091 -5.8161 27 7 0.1402 -6.7580 -2.3119 28 6 0.2774 -6.0526 -1.2061 29 7 0.6962 -4.8053 -1.2242 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8896 33 1 1.6958 -1.7520 1.2419 34 1 1.6594 -0.2161 2.1421 35 1 3.9418 -1.2845 2.0984 36 1 3.9164 0.3402 1.3684 37 1 7.0360 -3.6976 2.0311 38 1 3.9143 0.3408 -1.3675 39 1 3.9417 -1.2847 -2.0984 40 1 1.3660 -2.5422 -0.3917 41 1 1.0879 -4.4627 -4.5147 42 1 1.1869 -7.5699 -4.9678 43 1 0.0437 -6.5135 -0.2578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966908376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:03 Heat of formation + Delta-G solvation = -78.605273 kcal Electronic energy + Delta-G solvation = -30315.817555 eV Core-core repulsion = 25838.985762 eV Total energy + Delta-G solvation = -4476.831793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.14730 -48.15720 -42.51585 -41.08266 -39.30056 -36.16719 -35.57661 -34.20389 -33.71866 -33.38259 -31.22579 -29.19637 -28.83161 -26.57558 -25.47598 -24.87053 -24.18556 -22.97714 -22.18420 -20.44457 -19.88554 -19.30324 -18.67957 -18.66401 -18.08122 -17.23170 -17.21685 -16.86479 -16.76426 -16.64904 -16.18953 -15.74277 -15.58969 -15.30853 -15.18739 -14.97429 -14.91805 -14.80295 -14.47559 -14.24267 -14.04627 -13.85960 -13.61982 -13.11820 -12.95967 -12.77563 -12.65693 -12.37623 -12.30739 -12.21706 -12.03599 -11.87371 -11.62563 -11.55289 -11.36795 -11.17164 -11.06512 -10.73841 -10.64848 -10.13776 -8.87478 -8.15604 -5.47138 -0.85312 -0.52993 1.30389 1.43113 1.49860 1.51845 1.82932 2.04384 2.42112 2.50142 2.71796 2.87954 3.01309 3.07562 3.32265 3.38396 3.61785 3.72480 3.80031 3.83233 3.89117 4.00389 4.11046 4.30134 4.32324 4.51934 4.55301 4.67662 4.69777 4.84917 4.90338 4.95002 4.98032 5.02220 5.12556 5.18671 5.35381 5.38768 5.45719 5.55059 5.85973 6.11107 6.35769 6.63284 6.92240 6.99359 7.62958 8.01751 9.04553 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003408 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.096327 B = 8213.247328 C = 9107.752532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.098 0.902 4 C -0.123 4.123 5 C 0.116 3.884 6 N -0.612 5.612 7 C -0.238 4.238 8 H 0.036 0.964 9 C -0.034 4.034 10 N -0.959 5.959 11 Si 0.952 3.048 12 H -0.270 1.270 13 H -0.317 1.317 14 H -0.260 1.260 15 C 0.135 3.865 16 C 0.135 3.865 17 H 0.096 0.904 18 N -0.669 5.669 19 C 0.563 3.437 20 O -0.557 6.557 21 C 0.129 3.871 22 C -0.145 4.145 23 C 0.099 3.901 24 C 0.333 3.667 25 F -0.191 7.191 26 F -0.192 7.192 27 N -0.486 5.486 28 C 0.302 3.698 29 N -0.492 5.492 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.260 0.740 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.413 0.587 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 -0.287 -6.066 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.116 0.884 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.336 5.336 7 C -0.368 4.368 8 H 0.054 0.946 9 C -0.229 4.229 10 N -0.605 5.605 11 Si 0.781 3.219 12 H -0.197 1.197 13 H -0.247 1.247 14 H -0.184 1.184 15 C 0.009 3.991 16 C 0.030 3.970 17 H 0.114 0.886 18 N -0.319 5.319 19 C 0.346 3.654 20 O -0.435 6.435 21 C -0.019 4.019 22 C -0.168 4.168 23 C -0.051 4.051 24 C 0.279 3.721 25 F -0.172 7.172 26 F -0.174 7.174 27 N -0.201 5.201 28 C 0.014 3.986 29 N -0.209 5.209 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.251 0.749 41 H 0.192 0.808 42 H 0.198 0.802 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -17.006 -0.327 -5.852 17.988 hybrid contribution 0.988 0.276 0.180 1.042 sum -16.018 -0.050 -5.672 16.992 Atomic orbital electron populations 1.21772 0.93040 1.01873 1.02780 1.21312 0.96975 0.99832 0.92355 0.88388 1.22013 0.94887 1.00669 0.98654 1.21477 0.94778 0.96614 0.87985 1.44336 1.48363 1.39704 1.01215 1.18637 1.10258 1.02488 1.05417 0.94616 1.25883 0.97706 0.98831 1.00459 1.69981 1.34297 1.24183 1.32050 0.85850 0.75376 0.81545 0.79167 1.19682 1.24655 1.18436 1.21432 0.92841 0.97231 0.87634 1.21644 0.94437 0.80795 1.00138 0.88565 1.45780 1.63571 1.13836 1.08700 1.17910 0.78293 0.84548 0.84620 1.90751 1.52159 1.69085 1.31501 1.21683 0.94911 0.95277 0.90015 1.22724 0.97939 0.94643 1.01486 1.22585 0.94608 0.92288 0.95608 1.20423 0.91804 0.80502 0.79376 1.93036 1.63410 1.65378 1.95354 1.93048 1.94346 1.72887 1.57073 1.68114 1.14357 1.38878 0.98723 1.25781 0.89442 0.85489 0.97845 1.68405 1.10246 1.13349 1.28850 0.93355 0.90708 0.92016 0.92669 0.89025 0.93279 0.94457 0.93104 0.93124 0.94320 0.74937 0.80806 0.80231 0.74074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.05 71.98 0.65 -1.95 16 2 C -0.09 -2.08 2.47 -10.75 -0.03 -2.10 16 3 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.12 -3.49 5.21 30.68 0.16 -3.33 16 5 C 0.12 4.46 4.20 86.36 0.36 4.83 16 6 N -0.61 -27.43 2.69 -699.11 -1.88 -29.31 16 7 C -0.24 -13.36 10.04 84.03 0.84 -12.52 16 8 H 0.04 2.29 8.05 -2.91 -0.02 2.26 16 9 C -0.03 -1.98 5.23 84.86 0.44 -1.53 16 10 N -0.96 -59.95 13.97 21.65 0.30 -59.65 16 11 Si 0.95 45.63 24.34 68.60 1.67 47.30 16 12 H -0.27 -12.02 6.62 99.48 0.66 -11.36 16 13 H -0.32 -15.76 7.11 99.48 0.71 -15.05 16 14 H -0.26 -11.84 6.64 99.48 0.66 -11.18 16 15 C 0.13 5.17 6.12 86.36 0.53 5.70 16 16 C 0.14 4.09 2.24 45.07 0.10 4.19 16 17 H 0.10 2.77 7.58 -2.39 -0.02 2.75 16 18 N -0.67 -21.32 4.25 -444.46 -1.89 -23.20 16 19 C 0.56 18.95 7.80 86.97 0.68 19.63 16 20 O -0.56 -20.83 16.09 -3.65 -0.06 -20.89 16 21 C 0.13 3.86 6.79 41.99 0.29 4.15 16 22 C -0.15 -3.69 9.06 22.71 0.21 -3.48 16 23 C 0.10 2.20 6.61 42.63 0.28 2.48 16 24 C 0.33 5.47 5.74 71.24 0.41 5.88 16 25 F -0.19 -3.78 17.09 44.97 0.77 -3.01 16 26 F -0.19 -3.55 16.56 44.97 0.74 -2.81 16 27 N -0.49 -11.29 10.08 -188.12 -1.90 -13.19 16 28 C 0.30 6.84 12.28 180.92 2.22 9.07 16 29 N -0.49 -13.69 9.70 -189.15 -1.84 -15.53 16 30 H 0.05 0.98 7.54 -2.39 -0.02 0.96 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.67 6.41 -2.39 -0.02 1.65 16 34 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.05 2.14 4.49 -2.39 -0.01 2.13 16 36 H 0.04 1.37 7.07 -2.38 -0.02 1.36 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.69 7.93 -2.38 -0.02 1.67 16 40 H 0.41 13.05 6.03 -92.71 -0.56 12.49 16 41 H 0.17 4.12 7.38 -2.91 -0.02 4.09 16 42 H 0.18 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.24 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -73.07 355.68 3.48 -69.59 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.41 Total: 19.69 kcal Atomic # 6 Polarization: 23.86 SS G_CDS: 7.14 Total: 31.01 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -7.20 Total: -140.87 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.51 Total: -5.82 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.67 Total: 47.30 kcal Total: -73.07 3.48 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966908376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.018 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds