Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46392 * 2 1 4 4 C 1.53042 * 109.45974 * 240.02496 * 2 1 3 5 5 C 1.53194 * 109.31328 * 178.61668 * 4 2 1 6 6 N 1.46928 * 108.77682 * 54.63626 * 5 4 2 7 7 C 1.36936 * 120.63253 * 126.36315 * 6 5 4 8 8 H 1.07997 * 119.99815 * 331.94128 * 7 6 5 9 9 C 1.38811 * 119.99731 * 152.20743 * 7 6 5 10 10 N 1.31616 * 120.00557 * 342.82633 * 9 7 6 11 11 Si 1.86802 * 119.99608 * 162.81947 * 9 7 6 12 12 H 1.48499 * 109.46959 * 90.00649 * 11 9 7 13 13 H 1.48502 * 109.47202 * 210.00157 * 11 9 7 14 14 H 1.48490 * 109.47351 * 330.00432 * 11 9 7 15 15 C 1.46924 * 118.73706 * 306.64478 * 6 5 4 16 16 C 1.52759 * 109.01048 * 53.30883 * 15 6 5 17 17 H 1.09004 * 109.56634 * 185.55329 * 16 15 6 18 18 N 1.46495 * 109.36349 * 65.49584 * 16 15 6 19 19 C 1.34783 * 119.99898 * 85.16154 * 18 16 15 20 20 O 1.21480 * 119.99722 * 0.02562 * 19 18 16 21 21 C 1.48453 * 120.00225 * 180.02562 * 19 18 16 22 22 C 1.39532 * 120.54884 * 179.72337 * 21 19 18 23 23 C 1.38762 * 118.25986 * 179.73607 * 22 21 19 24 24 C 1.50704 * 120.42504 * 180.26191 * 23 22 21 25 25 F 1.39900 * 109.46919 * 210.27877 * 24 23 22 26 26 F 1.39900 * 109.47136 * 330.27676 * 24 23 22 27 27 N 1.32205 * 119.15059 * 0.53642 * 23 22 21 28 28 C 1.31882 * 121.03402 * 359.71883 * 27 23 22 29 29 N 1.31585 * 121.91436 * 0.02562 * 28 27 23 30 30 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46636 * 299.97493 * 1 2 3 32 32 H 1.08996 * 109.46916 * 59.97202 * 1 2 3 33 33 H 1.09001 * 109.49578 * 58.66459 * 4 2 1 34 34 H 1.09000 * 109.52456 * 298.58672 * 4 2 1 35 35 H 1.08999 * 109.58822 * 294.85114 * 5 4 2 36 36 H 1.08997 * 109.58535 * 174.42227 * 5 4 2 37 37 H 0.96994 * 120.00446 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.58697 * 173.14355 * 15 6 5 39 39 H 1.09002 * 109.58667 * 293.56878 * 15 6 5 40 40 H 0.96994 * 120.00469 * 265.16605 * 18 16 15 41 41 H 1.07996 * 120.87040 * 359.97438 * 22 21 19 42 42 H 1.08996 * 109.47139 * 90.27992 * 24 23 22 43 43 H 1.07994 * 119.04078 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5714 -0.6888 -1.2642 6 7 4.0679 -1.2490 0.0002 7 6 4.9756 -2.2742 0.0003 8 1 5.0040 -2.9704 -0.8248 9 6 5.8555 -2.4219 1.0637 10 7 6.0606 -1.4201 1.8923 11 14 6.7485 -4.0427 1.3188 12 1 8.0362 -4.0200 0.5796 13 1 7.0125 -4.2399 2.7668 14 1 5.9069 -5.1565 0.8129 15 6 3.5671 -0.6923 1.2643 16 6 2.0399 -0.7207 1.2502 17 1 1.6572 -0.2205 2.1399 18 7 1.5800 -2.1115 1.2345 19 6 1.4514 -2.7918 2.3909 20 8 1.7163 -2.2515 3.4461 21 6 0.9860 -4.2014 2.3750 22 6 0.8542 -4.9182 3.5649 23 6 0.4100 -6.2310 3.4953 24 6 0.2444 -7.0482 4.7506 25 9 0.4726 -8.3979 4.4619 26 9 1.1628 -6.6156 5.7133 27 7 0.1392 -6.7574 2.3132 28 6 0.2797 -6.0532 1.2070 29 7 0.6930 -4.8041 1.2253 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6572 -0.2210 -2.1398 34 1 1.6977 -1.7558 -1.2387 35 1 3.9143 0.3406 -1.3673 36 1 3.9416 -1.2849 -2.0982 37 1 6.6752 -1.5234 2.6356 38 1 3.9346 -1.2906 2.0980 39 1 3.9097 0.3369 1.3715 40 1 1.3682 -2.5428 0.3920 41 1 1.0881 -4.4621 4.5154 42 1 -0.7686 -6.9248 5.1335 43 1 0.0497 -6.5155 0.2585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966908377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = -82.463325 kcal Electronic energy + Delta-G solvation = -30638.399401 eV Core-core repulsion = 26161.400311 eV Total energy + Delta-G solvation = -4476.999090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.15879 -48.17692 -42.50940 -40.99973 -39.15500 -36.02491 -35.56742 -34.30213 -33.72081 -32.84613 -30.91888 -29.02747 -28.80649 -26.53611 -25.70085 -24.86758 -23.75336 -22.77713 -22.16305 -20.34790 -19.86586 -19.31714 -18.68047 -18.62635 -18.09551 -17.22834 -16.90292 -16.79856 -16.75041 -16.49490 -16.08834 -15.74212 -15.55064 -15.35259 -14.99290 -14.91948 -14.78589 -14.61530 -14.49408 -14.14746 -14.05479 -13.60906 -13.17770 -13.04284 -12.77622 -12.76720 -12.64639 -12.51992 -12.32895 -12.29915 -12.03768 -11.98906 -11.60896 -11.56353 -11.28535 -11.09709 -11.06752 -10.66062 -10.56061 -10.06605 -8.66142 -7.90203 -5.33452 -0.85899 -0.53627 1.34037 1.37396 1.43622 1.53964 1.82593 2.07543 2.43494 2.51769 2.73149 2.88676 3.01181 3.25469 3.37689 3.61325 3.66870 3.77146 3.82403 3.86509 3.98868 4.11126 4.12981 4.32167 4.50591 4.66946 4.70219 4.78783 4.87787 4.92357 4.95966 5.07855 5.17085 5.23429 5.25474 5.39839 5.45856 5.50914 5.56320 5.64728 5.68738 6.36571 6.40821 6.64496 7.07835 7.12075 7.85621 8.35578 9.14877 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.004420 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.634614 B = 6332.753025 C = 7809.107862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.601 5.601 7 C -0.246 4.246 8 H 0.066 0.934 9 C -0.047 4.047 10 N -0.930 5.930 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.301 1.301 14 H -0.276 1.276 15 C 0.170 3.830 16 C 0.132 3.868 17 H 0.075 0.925 18 N -0.661 5.661 19 C 0.557 3.443 20 O -0.563 6.563 21 C 0.134 3.866 22 C -0.150 4.150 23 C 0.101 3.899 24 C 0.331 3.669 25 F -0.192 7.192 26 F -0.198 7.198 27 N -0.485 5.485 28 C 0.303 3.697 29 N -0.488 5.488 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.055 0.945 37 H 0.246 0.754 38 H 0.049 0.951 39 H 0.004 0.996 40 H 0.414 0.586 41 H 0.168 0.832 42 H 0.191 0.809 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.088 -6.570 -1.309 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.324 5.324 7 C -0.377 4.377 8 H 0.084 0.916 9 C -0.243 4.243 10 N -0.577 5.577 11 Si 0.775 3.225 12 H -0.205 1.205 13 H -0.228 1.228 14 H -0.201 1.201 15 C 0.043 3.957 16 C 0.026 3.974 17 H 0.093 0.907 18 N -0.311 5.311 19 C 0.340 3.660 20 O -0.442 6.442 21 C -0.014 4.014 22 C -0.173 4.173 23 C -0.050 4.050 24 C 0.277 3.723 25 F -0.174 7.174 26 F -0.179 7.179 27 N -0.199 5.199 28 C 0.015 3.985 29 N -0.205 5.205 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.185 0.815 42 H 0.207 0.793 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -18.945 -6.555 -1.358 20.093 hybrid contribution 1.623 -0.464 0.970 1.947 sum -17.322 -7.020 -0.389 18.694 Atomic orbital electron populations 1.21766 0.93010 1.01990 1.02511 1.21289 0.96919 0.99324 0.93052 0.89886 1.21972 0.95624 1.00345 0.97695 1.21154 0.93657 0.96037 0.88044 1.44152 1.47906 1.39572 1.00763 1.19359 1.09212 1.03377 1.05749 0.91623 1.25610 0.98771 0.99489 1.00408 1.70139 1.38591 1.30571 1.18369 0.85598 0.79187 0.81367 0.76344 1.20486 1.22763 1.20130 1.20809 0.89765 0.95518 0.89655 1.21634 0.95580 0.80797 0.99416 0.90747 1.45640 1.63348 1.13593 1.08473 1.18018 0.78449 0.84776 0.84716 1.90767 1.52216 1.69230 1.31957 1.21608 0.94689 0.94942 0.90179 1.22715 0.97810 0.95261 1.01546 1.22573 0.94532 0.92120 0.95740 1.20559 0.95353 0.74669 0.81722 1.93035 1.96157 1.34243 1.93915 1.93054 1.70935 1.89533 1.64367 1.68127 1.14841 1.38403 0.98561 1.25890 0.89303 0.85319 0.97944 1.68396 1.10343 1.13290 1.28440 0.92895 0.92817 0.90404 0.88888 0.92313 0.96496 0.92616 0.94501 0.93272 0.97784 0.74797 0.81458 0.79264 0.73465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.05 71.98 0.65 -2.23 16 2 C -0.09 -2.43 2.48 -10.76 -0.03 -2.46 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -3.28 5.19 30.67 0.16 -3.12 16 5 C 0.14 5.15 6.52 86.36 0.56 5.71 16 6 N -0.60 -28.98 2.92 -699.93 -2.04 -31.02 16 7 C -0.25 -13.43 9.58 84.03 0.81 -12.63 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 9 C -0.05 -2.71 4.91 84.86 0.42 -2.30 16 10 N -0.93 -57.09 11.20 21.65 0.24 -56.85 16 11 Si 0.95 47.01 29.59 68.60 2.03 49.04 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 C 0.17 8.22 4.87 86.22 0.42 8.64 16 16 C 0.13 4.86 2.24 44.93 0.10 4.96 16 17 H 0.07 2.83 7.58 -2.39 -0.02 2.81 16 18 N -0.66 -23.38 4.24 -445.13 -1.89 -25.27 16 19 C 0.56 21.14 7.79 86.97 0.68 21.82 16 20 O -0.56 -24.91 16.09 -3.65 -0.06 -24.97 16 21 C 0.13 4.24 6.79 41.99 0.29 4.53 16 22 C -0.15 -4.16 9.07 22.71 0.21 -3.95 16 23 C 0.10 2.31 6.61 42.63 0.28 2.59 16 24 C 0.33 5.73 5.74 71.24 0.41 6.14 16 25 F -0.19 -4.09 17.09 44.97 0.77 -3.32 16 26 F -0.20 -4.30 16.55 44.97 0.74 -3.55 16 27 N -0.48 -11.00 10.08 -188.12 -1.90 -12.90 16 28 C 0.30 6.45 12.28 180.92 2.22 8.67 16 29 N -0.49 -13.30 9.70 -189.16 -1.84 -15.14 16 30 H 0.05 1.13 7.55 -2.39 -0.02 1.11 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 35 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 37 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.05 2.87 6.06 -2.39 -0.01 2.85 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.41 13.40 6.03 -92.71 -0.56 12.84 16 41 H 0.17 4.58 7.37 -2.91 -0.02 4.56 16 42 H 0.19 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.25 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -74.03 362.06 3.74 -70.29 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.50 Total: 17.31 kcal Atomic # 6 Polarization: 29.20 SS G_CDS: 7.17 Total: 36.37 kcal Atomic # 7 Polarization: -133.76 SS G_CDS: -7.42 Total: -141.18 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.06 Total: -24.97 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.51 Total: -6.87 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.03 3.74 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966908377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.170 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds