Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08998 * 109.44992 * 2 1 4 4 C 1.53043 * 109.45532 * 119.96167 * 2 1 3 5 5 C 1.53187 * 109.30786 * 181.38500 * 4 2 1 6 6 N 1.46933 * 108.77769 * 305.36428 * 5 4 2 7 7 C 1.36929 * 120.63167 * 233.63078 * 6 5 4 8 8 H 1.07998 * 120.00354 * 27.66837 * 7 6 5 9 9 C 1.38814 * 120.00045 * 207.66881 * 7 6 5 10 10 N 1.31615 * 120.00368 * 17.36091 * 9 7 6 11 11 Si 1.86805 * 119.99928 * 197.36473 * 9 7 6 12 12 H 1.48501 * 109.47230 * 89.99831 * 11 9 7 13 13 H 1.48501 * 109.46997 * 209.99489 * 11 9 7 14 14 H 1.48500 * 109.47149 * 329.99829 * 11 9 7 15 15 C 1.46927 * 118.73537 * 53.61266 * 6 5 4 16 16 C 1.53033 * 109.45762 * 240.02882 * 2 1 3 17 17 H 1.08992 * 109.52875 * 298.58421 * 16 2 1 18 18 N 1.46499 * 109.49717 * 58.66898 * 16 2 1 19 19 C 1.34779 * 120.00025 * 204.83136 * 18 16 2 20 20 O 1.21288 * 120.00065 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00244 * 179.97438 * 19 18 16 22 22 C 1.50697 * 109.47090 * 180.02562 * 21 19 18 23 23 C 1.35309 * 126.04562 * 100.00204 * 22 21 19 24 24 N 1.34946 * 107.76628 * 179.97438 * 23 22 21 25 25 C 1.46506 * 126.02564 * 179.97438 * 24 23 22 26 26 N 1.40077 * 107.94965 * 359.97438 * 24 23 22 27 27 C 1.30903 * 108.20198 * 0.02562 * 26 24 23 28 28 Cl 1.73602 * 125.91389 * 179.97438 * 27 26 24 29 29 H 1.08990 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46867 * 299.97339 * 1 2 3 31 31 H 1.09000 * 109.46804 * 59.96857 * 1 2 3 32 32 H 1.09003 * 109.49679 * 61.43678 * 4 2 1 33 33 H 1.08995 * 109.52739 * 301.35324 * 4 2 1 34 34 H 1.09007 * 109.58846 * 185.58306 * 5 4 2 35 35 H 1.08999 * 109.70835 * 65.22467 * 5 4 2 36 36 H 0.96996 * 120.00576 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58171 * 186.60348 * 15 6 5 38 38 H 1.09003 * 109.58729 * 66.17869 * 15 6 5 39 39 H 0.97001 * 120.00238 * 24.83420 * 18 16 2 40 40 H 1.09001 * 109.46886 * 60.00333 * 21 19 18 41 41 H 1.08998 * 109.47251 * 300.00284 * 21 19 18 42 42 H 1.08002 * 126.11564 * 359.71859 * 23 22 21 43 43 H 1.08995 * 109.47394 * 90.00011 * 25 24 23 44 44 H 1.08997 * 109.46881 * 210.00572 * 25 24 23 45 45 H 1.08998 * 109.46480 * 329.99863 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2489 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0085 -2.9663 0.8285 9 6 5.8540 -2.4234 -1.0643 10 7 6.0604 -1.4218 -1.8929 11 14 6.7428 -4.0463 -1.3211 12 1 5.9252 -4.9257 -2.1949 13 1 8.0576 -3.7942 -1.9639 14 1 6.9523 -4.7090 -0.0088 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6978 -1.7556 -1.2388 18 7 1.5257 -0.0488 -2.4459 19 6 1.4003 -0.7315 -3.6012 20 8 1.7128 -1.9024 -3.6507 21 6 0.8709 -0.0404 -4.8312 22 6 0.8294 -1.0174 -5.9778 23 6 -0.2649 -1.6775 -6.4222 24 7 0.1147 -2.4522 -7.4599 25 6 -0.7559 -3.3363 -8.2389 26 7 1.4878 -2.2621 -7.6610 27 6 1.9160 -1.4019 -6.7720 28 17 3.5489 -0.8361 -6.6064 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 1.6978 -1.7556 1.2384 33 1 1.6572 -0.2211 2.1402 34 1 3.9417 -1.2845 2.0986 35 1 3.9164 0.3401 1.3686 36 1 6.6738 -1.5263 -2.6369 37 1 3.9418 -1.2847 -2.0983 38 1 3.9144 0.3409 -1.3673 39 1 1.2754 0.8876 -2.4063 40 1 1.5231 0.7943 -5.0881 41 1 -0.1347 0.3314 -4.6346 42 1 -1.2628 -1.6014 -6.0162 43 1 -1.1736 -2.7849 -9.0813 44 1 -0.1768 -4.1821 -8.6095 45 1 -1.5650 -3.6997 -7.6054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968332388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = 55.993708 kcal Electronic energy + Delta-G solvation = -28178.813625 eV Core-core repulsion = 24259.615162 eV Total energy + Delta-G solvation = -3919.198463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36628 -39.34949 -37.48454 -36.52806 -34.23716 -33.55694 -32.98946 -31.86311 -30.89551 -29.19349 -28.07083 -27.23665 -25.70747 -23.97991 -22.31428 -21.32032 -21.04061 -20.64792 -19.78107 -19.17108 -17.09519 -16.72532 -16.59914 -15.56792 -15.47488 -15.06344 -14.91556 -14.50368 -13.76842 -13.71248 -13.64615 -13.55105 -13.38173 -13.25595 -13.13443 -12.78919 -12.59607 -12.33474 -11.95851 -11.78246 -11.58485 -11.53310 -11.51046 -11.36014 -10.83385 -10.65918 -10.52845 -10.42977 -10.37791 -10.09528 -9.88532 -9.81866 -9.42335 -9.32983 -9.18369 -8.43916 -8.38020 -8.33454 -6.58028 -5.67684 -3.10719 1.58798 1.71194 2.49403 2.87284 3.22185 3.48719 3.55174 3.57109 3.80267 4.37658 4.61223 4.63541 4.88777 4.98416 5.11403 5.16253 5.22393 5.30571 5.36184 5.46065 5.50247 5.57261 5.60519 5.68067 5.90286 5.96817 6.05520 6.08760 6.15922 6.18689 6.29500 6.45723 6.51306 6.62079 6.79683 6.80314 6.83236 7.02460 7.09663 7.40115 7.41862 7.82618 7.91865 8.09557 8.56199 8.85000 9.31232 9.95267 10.49877 11.39994 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.004197 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.351974 B = 6670.481192 C = 8433.774528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.258 4.258 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.898 3.102 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.167 3.833 16 C 0.126 3.874 17 H 0.079 0.921 18 N -0.722 5.722 19 C 0.509 3.491 20 O -0.522 6.522 21 C -0.064 4.064 22 C -0.198 4.198 23 C 0.073 3.927 24 N -0.368 5.368 25 C 0.105 3.895 26 N -0.285 5.285 27 C 0.143 3.857 28 Cl 0.016 6.984 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.015 0.985 39 H 0.390 0.610 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.180 0.820 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.170 5.323 -8.326 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.387 4.387 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.728 3.272 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.205 1.205 15 C 0.040 3.960 16 C 0.021 3.979 17 H 0.097 0.903 18 N -0.373 5.373 19 C 0.293 3.707 20 O -0.397 6.397 21 C -0.105 4.105 22 C -0.211 4.211 23 C -0.073 4.073 24 N -0.151 5.151 25 C -0.036 4.036 26 N -0.111 5.111 27 C -0.049 4.049 28 Cl 0.044 6.956 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.033 0.967 39 H 0.223 0.777 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.197 0.803 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.431 3.648 -9.544 20.205 hybrid contribution 0.271 0.174 0.473 0.573 sum -17.160 3.822 -9.070 19.782 Atomic orbital electron populations 1.21837 0.96132 1.01416 1.00616 1.21301 0.94460 0.99650 0.95707 0.91566 1.22064 0.98979 0.99978 0.95479 1.20947 0.90810 0.96415 0.90233 1.43963 1.48160 1.39793 0.99210 1.19125 1.09904 1.03255 1.06431 0.91721 1.24986 0.97111 0.97239 0.99648 1.70002 1.37428 1.28938 1.17602 0.86360 0.78755 0.84118 0.77957 1.21281 1.21785 1.20469 1.21105 0.86639 0.97342 0.90939 1.21915 0.98237 0.96221 0.81539 0.90259 1.46043 1.66702 1.13939 1.10666 1.20412 0.78632 0.87522 0.84112 1.90756 1.48363 1.16320 1.84217 1.19949 1.03153 0.97048 0.90393 1.19222 0.91320 1.07845 1.02666 1.22224 1.00090 0.93901 0.91101 1.48138 1.05870 1.34854 1.26224 1.21892 0.92587 0.93426 0.95704 1.77353 0.90121 1.19919 1.23659 1.22577 0.88992 0.97285 0.96019 1.98433 1.14313 1.86218 1.96614 0.93072 0.93297 0.93198 0.92214 0.92756 0.92755 0.96501 0.93699 0.88609 0.96665 0.77673 0.88146 0.88439 0.80282 0.90603 0.89096 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.02 37.16 0.34 -1.47 16 2 C -0.09 -1.46 2.27 -90.57 -0.21 -1.66 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 5 C 0.14 2.99 6.52 -3.71 -0.02 2.97 16 6 N -0.59 -15.16 2.99 -172.31 -0.52 -15.68 16 7 C -0.26 -7.38 9.58 -15.06 -0.14 -7.52 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16 9 C 0.01 0.28 4.91 -17.43 -0.09 0.19 16 10 N -0.90 -27.24 11.19 55.49 0.62 -26.61 16 11 Si 0.90 23.21 29.59 -169.99 -5.03 18.18 16 12 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.17 4.10 4.89 -3.71 -0.02 4.09 16 16 C 0.13 2.44 2.06 -67.81 -0.14 2.30 16 17 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 18 N -0.72 -11.38 4.37 -53.69 -0.23 -11.61 16 19 C 0.51 8.65 7.79 -10.98 -0.09 8.56 16 20 O -0.52 -11.69 15.70 5.55 0.09 -11.60 16 21 C -0.06 -0.79 6.04 -29.04 -0.18 -0.96 16 22 C -0.20 -2.80 4.60 -105.02 -0.48 -3.28 16 23 C 0.07 0.83 11.40 -17.23 -0.20 0.63 16 24 N -0.37 -4.49 4.01 -68.16 -0.27 -4.76 16 25 C 0.10 0.72 11.47 59.85 0.69 1.41 16 26 N -0.29 -4.61 12.58 32.95 0.41 -4.20 16 27 C 0.14 2.38 7.84 -17.30 -0.14 2.24 16 28 Cl 0.02 0.28 29.16 -51.86 -1.51 -1.23 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.10 2.81 6.03 -51.93 -0.31 2.50 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.39 4.71 8.30 -40.82 -0.34 4.38 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -37.33 383.81 -8.36 -45.68 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.88 Total: 0.84 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.81 Total: 5.21 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.01 Total: -62.87 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.03 Total: 18.18 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.33 -8.36 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968332388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.678 kcal (2) G-P(sol) polarization free energy of solvation -37.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds