Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08998 * 109.44992 * 2 1 4 4 C 1.53043 * 109.45532 * 119.96167 * 2 1 3 5 5 C 1.53187 * 109.30786 * 181.38500 * 4 2 1 6 6 N 1.46933 * 108.77769 * 305.36428 * 5 4 2 7 7 C 1.36929 * 120.63167 * 233.63078 * 6 5 4 8 8 H 1.07998 * 120.00354 * 27.66837 * 7 6 5 9 9 C 1.38814 * 120.00045 * 207.66881 * 7 6 5 10 10 N 1.31615 * 120.00368 * 17.36091 * 9 7 6 11 11 Si 1.86805 * 119.99928 * 197.36473 * 9 7 6 12 12 H 1.48501 * 109.47230 * 89.99831 * 11 9 7 13 13 H 1.48501 * 109.46997 * 209.99489 * 11 9 7 14 14 H 1.48500 * 109.47149 * 329.99829 * 11 9 7 15 15 C 1.46927 * 118.73537 * 53.61266 * 6 5 4 16 16 C 1.53033 * 109.45762 * 240.02882 * 2 1 3 17 17 H 1.08992 * 109.52875 * 298.58421 * 16 2 1 18 18 N 1.46499 * 109.49717 * 58.66898 * 16 2 1 19 19 C 1.34779 * 120.00025 * 204.83136 * 18 16 2 20 20 O 1.21288 * 120.00065 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00244 * 179.97438 * 19 18 16 22 22 C 1.50697 * 109.47090 * 180.02562 * 21 19 18 23 23 C 1.35309 * 126.04562 * 100.00204 * 22 21 19 24 24 N 1.34946 * 107.76628 * 179.97438 * 23 22 21 25 25 C 1.46506 * 126.02564 * 179.97438 * 24 23 22 26 26 N 1.40077 * 107.94965 * 359.97438 * 24 23 22 27 27 C 1.30903 * 108.20198 * 0.02562 * 26 24 23 28 28 Cl 1.73602 * 125.91389 * 179.97438 * 27 26 24 29 29 H 1.08990 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46867 * 299.97339 * 1 2 3 31 31 H 1.09000 * 109.46804 * 59.96857 * 1 2 3 32 32 H 1.09003 * 109.49679 * 61.43678 * 4 2 1 33 33 H 1.08995 * 109.52739 * 301.35324 * 4 2 1 34 34 H 1.09007 * 109.58846 * 185.58306 * 5 4 2 35 35 H 1.08999 * 109.70835 * 65.22467 * 5 4 2 36 36 H 0.96996 * 120.00576 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58171 * 186.60348 * 15 6 5 38 38 H 1.09003 * 109.58729 * 66.17869 * 15 6 5 39 39 H 0.97001 * 120.00238 * 24.83420 * 18 16 2 40 40 H 1.09001 * 109.46886 * 60.00333 * 21 19 18 41 41 H 1.08998 * 109.47251 * 300.00284 * 21 19 18 42 42 H 1.08002 * 126.11564 * 359.71859 * 23 22 21 43 43 H 1.08995 * 109.47394 * 90.00011 * 25 24 23 44 44 H 1.08997 * 109.46881 * 210.00572 * 25 24 23 45 45 H 1.08998 * 109.46480 * 329.99863 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2489 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0085 -2.9663 0.8285 9 6 5.8540 -2.4234 -1.0643 10 7 6.0604 -1.4218 -1.8929 11 14 6.7428 -4.0463 -1.3211 12 1 5.9252 -4.9257 -2.1949 13 1 8.0576 -3.7942 -1.9639 14 1 6.9523 -4.7090 -0.0088 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6978 -1.7556 -1.2388 18 7 1.5257 -0.0488 -2.4459 19 6 1.4003 -0.7315 -3.6012 20 8 1.7128 -1.9024 -3.6507 21 6 0.8709 -0.0404 -4.8312 22 6 0.8294 -1.0174 -5.9778 23 6 -0.2649 -1.6775 -6.4222 24 7 0.1147 -2.4522 -7.4599 25 6 -0.7559 -3.3363 -8.2389 26 7 1.4878 -2.2621 -7.6610 27 6 1.9160 -1.4019 -6.7720 28 17 3.5489 -0.8361 -6.6064 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 1.6978 -1.7556 1.2384 33 1 1.6572 -0.2211 2.1402 34 1 3.9417 -1.2845 2.0986 35 1 3.9164 0.3401 1.3686 36 1 6.6738 -1.5263 -2.6369 37 1 3.9418 -1.2847 -2.0983 38 1 3.9144 0.3409 -1.3673 39 1 1.2754 0.8876 -2.4063 40 1 1.5231 0.7943 -5.0881 41 1 -0.1347 0.3314 -4.6346 42 1 -1.2628 -1.6014 -6.0162 43 1 -1.1736 -2.7849 -9.0813 44 1 -0.1768 -4.1821 -8.6095 45 1 -1.5650 -3.6997 -7.6054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968332388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = 29.258202 kcal Electronic energy + Delta-G solvation = -28179.972963 eV Core-core repulsion = 24259.615162 eV Total energy + Delta-G solvation = -3920.357801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35532 -40.78303 -39.03512 -37.75733 -36.01261 -34.57206 -34.46874 -32.95924 -32.72505 -30.65093 -29.19968 -28.77069 -26.71574 -25.79816 -23.85175 -22.63244 -22.27493 -21.85777 -21.21626 -20.60029 -18.74261 -18.11584 -17.77205 -17.07666 -16.67650 -16.46697 -16.13315 -15.89868 -15.56762 -15.25536 -15.03791 -14.82800 -14.58471 -14.39546 -14.24421 -14.03169 -13.94273 -13.51020 -13.31363 -13.20207 -13.01216 -12.81907 -12.76753 -12.58263 -12.56546 -12.51135 -12.27806 -12.10849 -11.88237 -11.58326 -11.54715 -11.37585 -11.14050 -10.70925 -10.54510 -10.28757 -9.90416 -9.43762 -8.67545 -7.88761 -5.33820 0.52745 0.74969 1.36255 1.40990 1.42689 1.47723 1.91515 2.00152 2.44014 2.56060 3.27538 3.55695 3.77283 3.88101 3.91600 4.05361 4.09284 4.21310 4.33249 4.40173 4.44920 4.54336 4.59363 4.66648 4.68976 4.71192 4.74021 4.78219 4.97438 4.99834 5.04415 5.15009 5.17647 5.23757 5.28157 5.37234 5.53047 5.56035 5.61296 5.64266 5.88880 6.01987 6.36867 6.39973 6.84614 7.13027 7.58329 7.87314 8.35207 9.14906 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.004197 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.351974 B = 6670.481192 C = 8433.774528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.610 5.610 7 C -0.263 4.263 8 H 0.066 0.934 9 C -0.045 4.045 10 N -0.925 5.925 11 Si 0.953 3.047 12 H -0.299 1.299 13 H -0.291 1.291 14 H -0.259 1.259 15 C 0.179 3.821 16 C 0.144 3.856 17 H 0.044 0.956 18 N -0.709 5.709 19 C 0.504 3.496 20 O -0.582 6.582 21 C -0.052 4.052 22 C -0.227 4.227 23 C 0.093 3.907 24 N -0.363 5.363 25 C 0.093 3.907 26 N -0.329 5.329 27 C 0.116 3.884 28 Cl -0.012 7.012 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.021 0.979 36 H 0.245 0.755 37 H 0.041 0.959 38 H -0.004 1.004 39 H 0.413 0.587 40 H 0.109 0.891 41 H 0.151 0.849 42 H 0.232 0.768 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.279 6.430 -7.393 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.334 5.334 7 C -0.394 4.394 8 H 0.084 0.916 9 C -0.241 4.241 10 N -0.571 5.571 11 Si 0.782 3.218 12 H -0.227 1.227 13 H -0.218 1.218 14 H -0.183 1.183 15 C 0.052 3.948 16 C 0.038 3.962 17 H 0.062 0.938 18 N -0.362 5.362 19 C 0.292 3.708 20 O -0.461 6.461 21 C -0.092 4.092 22 C -0.240 4.240 23 C -0.054 4.054 24 N -0.146 5.146 25 C -0.046 4.046 26 N -0.155 5.155 27 C -0.074 4.074 28 Cl 0.016 6.984 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.250 0.750 40 H 0.127 0.873 41 H 0.169 0.831 42 H 0.248 0.752 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.571 4.798 -8.591 23.709 hybrid contribution 1.473 -0.217 0.169 1.499 sum -20.098 4.581 -8.421 22.267 Atomic orbital electron populations 1.21750 0.92671 1.01569 1.02990 1.21262 0.97180 0.99231 0.92745 0.90341 1.21963 0.95498 1.00173 0.97905 1.21172 0.93790 0.96063 0.87919 1.44256 1.48179 1.39753 1.01212 1.19470 1.09740 1.04013 1.06165 0.91586 1.25681 0.98589 0.99913 0.99965 1.70153 1.38372 1.30546 1.18018 0.85477 0.77358 0.80728 0.78279 1.22683 1.21766 1.18319 1.20810 0.90340 0.94692 0.88985 1.21348 0.94290 0.95672 0.84926 0.93752 1.45860 1.65827 1.14933 1.09565 1.21352 0.77271 0.86932 0.85279 1.90735 1.50921 1.19310 1.85164 1.19989 1.05942 0.96179 0.87097 1.19563 0.91349 1.09576 1.03491 1.23006 1.01351 0.91514 0.89552 1.48622 1.04768 1.34721 1.26470 1.22360 0.92433 0.92930 0.96893 1.77228 0.92844 1.20742 1.24727 1.22801 0.88500 0.98530 0.97599 1.98405 1.16638 1.86582 1.96778 0.94027 0.90661 0.91141 0.93368 0.88666 0.92923 0.96123 0.94601 0.94039 0.98555 0.75030 0.87315 0.83085 0.75164 0.88200 0.89726 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.02 71.99 0.65 -2.11 16 2 C -0.09 -2.47 2.27 -10.76 -0.02 -2.50 16 3 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.12 -3.67 5.36 30.67 0.16 -3.51 16 5 C 0.14 5.62 6.52 86.36 0.56 6.18 16 6 N -0.61 -32.32 2.99 -699.07 -2.09 -34.42 16 7 C -0.26 -15.58 9.58 84.04 0.81 -14.78 16 8 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 9 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 10 N -0.93 -59.30 11.19 21.65 0.24 -59.05 16 11 Si 0.95 49.59 29.59 68.60 2.03 51.62 16 12 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 13 H -0.29 -15.01 7.11 99.48 0.71 -14.31 16 14 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 15 C 0.18 9.17 4.89 86.36 0.42 9.59 16 16 C 0.14 5.58 2.06 45.07 0.09 5.67 16 17 H 0.04 2.05 7.58 -2.39 -0.02 2.03 16 18 N -0.71 -21.54 4.37 -442.17 -1.93 -23.47 16 19 C 0.50 16.89 7.79 87.66 0.68 17.57 16 20 O -0.58 -26.96 15.70 -3.05 -0.05 -27.01 16 21 C -0.05 -1.15 6.04 29.10 0.18 -0.98 16 22 C -0.23 -6.12 4.60 -20.12 -0.09 -6.21 16 23 C 0.09 1.83 11.40 83.54 0.95 2.78 16 24 N -0.36 -8.17 4.01 -369.57 -1.48 -9.65 16 25 C 0.09 1.02 11.47 127.77 1.47 2.48 16 26 N -0.33 -10.78 12.58 -49.68 -0.62 -11.41 16 27 C 0.12 3.94 7.84 85.25 0.67 4.61 16 28 Cl -0.01 -0.43 29.16 -2.72 -0.08 -0.51 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.19 7.35 -2.39 -0.02 1.18 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.15 7.93 -2.38 -0.02 2.13 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.24 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.04 2.58 6.03 -2.39 -0.01 2.57 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.41 8.78 8.30 -92.71 -0.77 8.01 16 40 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.23 1.88 8.06 -2.91 -0.02 1.85 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -90.88 383.81 3.18 -87.69 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.23 Total: 9.74 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.94 Total: 16.46 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -5.89 Total: -138.00 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.62 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -90.88 3.18 -87.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968332388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.951 kcal (2) G-P(sol) polarization free energy of solvation -90.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds