Wall clock time and date at job start Sat Apr 11 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.44458 * 2 1 4 4 C 1.53040 * 109.45712 * 240.04103 * 2 1 3 5 5 C 1.53192 * 109.31149 * 178.61234 * 4 2 1 6 6 N 1.46924 * 108.77760 * 54.62855 * 5 4 2 7 7 C 1.36940 * 120.63219 * 126.37039 * 6 5 4 8 8 H 1.08000 * 119.99785 * 332.62219 * 7 6 5 9 9 C 1.38811 * 120.00119 * 152.61548 * 7 6 5 10 10 N 1.31623 * 119.99726 * 159.37260 * 9 7 6 11 11 Si 1.86800 * 120.00085 * 339.37758 * 9 7 6 12 12 H 1.48502 * 109.47045 * 92.93663 * 11 9 7 13 13 H 1.48497 * 109.46860 * 212.93233 * 11 9 7 14 14 H 1.48495 * 109.46928 * 332.93435 * 11 9 7 15 15 C 1.46926 * 118.74335 * 306.39803 * 6 5 4 16 16 C 1.53033 * 109.46357 * 119.96601 * 2 1 3 17 17 H 1.09009 * 109.49220 * 61.40432 * 16 2 1 18 18 N 1.46495 * 109.49939 * 301.34259 * 16 2 1 19 19 C 1.34780 * 120.00338 * 154.99954 * 18 16 2 20 20 O 1.21281 * 119.99604 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00300 * 179.97438 * 19 18 16 22 22 C 1.50695 * 109.47098 * 180.02562 * 21 19 18 23 23 C 1.35312 * 126.04519 * 99.99957 * 22 21 19 24 24 N 1.34950 * 107.76132 * 180.02562 * 23 22 21 25 25 C 1.46501 * 126.02408 * 179.97438 * 24 23 22 26 26 N 1.40081 * 107.95329 * 0.22894 * 24 23 22 27 27 C 1.30906 * 108.19734 * 359.61496 * 26 24 23 28 28 Cl 1.73599 * 125.91142 * 180.13902 * 27 26 24 29 29 H 1.08995 * 109.47089 * 300.02890 * 1 2 3 30 30 H 1.08994 * 109.47401 * 60.03566 * 1 2 3 31 31 H 1.09001 * 109.46794 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.49656 * 298.55847 * 4 2 1 33 33 H 1.08993 * 109.50358 * 58.65914 * 4 2 1 34 34 H 1.08991 * 109.59157 * 174.41958 * 5 4 2 35 35 H 1.09004 * 109.58462 * 294.69975 * 5 4 2 36 36 H 0.96997 * 119.99926 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.58532 * 293.81987 * 15 6 5 38 38 H 1.08995 * 109.59389 * 173.39680 * 15 6 5 39 39 H 0.97002 * 120.00261 * 334.99613 * 18 16 2 40 40 H 1.08994 * 109.47070 * 59.99779 * 21 19 18 41 41 H 1.09000 * 109.47082 * 299.99890 * 21 19 18 42 42 H 1.07989 * 126.11825 * 0.02562 * 23 22 21 43 43 H 1.09001 * 109.47608 * 89.99959 * 25 24 23 44 44 H 1.09000 * 109.46864 * 329.99481 * 25 24 23 45 45 H 1.09005 * 109.47127 * 210.00526 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5714 -0.6884 -1.2644 6 7 4.0680 -1.2486 -0.0002 7 6 4.9759 -2.2738 -0.0003 8 1 5.0118 -2.9633 -0.8307 9 6 5.8502 -2.4266 1.0670 10 7 6.4266 -3.5898 1.2842 11 14 6.2087 -0.9815 2.1951 12 1 5.2802 -1.0157 3.3536 13 1 7.6093 -1.0682 2.6807 14 1 6.0215 0.2880 1.4479 15 6 3.5715 -0.6886 1.2641 16 6 2.0400 -0.7207 1.2500 17 1 1.6975 -1.7555 1.2384 18 7 1.5257 -0.0488 2.4459 19 6 1.3973 -0.7324 3.6003 20 8 1.7071 -1.9039 3.6490 21 6 0.8687 -0.0410 4.8307 22 6 0.8246 -1.0188 5.9764 23 6 1.7366 -1.1221 6.9707 24 7 1.3374 -2.1139 7.7941 25 6 2.0336 -2.5635 9.0022 26 7 0.1430 -2.6417 7.2870 27 6 -0.1667 -1.9813 6.2000 28 17 -1.5620 -2.2563 5.2044 29 1 -0.3633 0.5143 0.8897 30 1 -0.3634 0.5132 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6979 -1.7555 -1.2384 33 1 1.6572 -0.2206 -2.1399 34 1 3.9417 -1.2842 -2.0986 35 1 3.9142 0.3409 -1.3701 36 1 7.0373 -3.6967 2.0301 37 1 3.9143 0.3410 1.3673 38 1 3.9419 -1.2844 2.0983 39 1 1.2776 0.8882 2.4069 40 1 -0.1355 0.3339 4.6336 41 1 1.5232 0.7915 5.0890 42 1 2.6249 -0.5187 7.0848 43 1 1.6742 -1.9966 9.8610 44 1 3.1054 -2.4041 8.8844 45 1 1.8393 -3.6244 9.1600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968332390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:17 Heat of formation + Delta-G solvation = 60.879310 kcal Electronic energy + Delta-G solvation = -28250.932548 eV Core-core repulsion = 24331.945941 eV Total energy + Delta-G solvation = -3918.986607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45749 -39.59556 -37.75885 -36.76035 -34.45314 -33.64011 -33.14052 -31.96888 -31.31278 -29.55328 -28.32083 -27.47697 -25.82463 -23.86155 -22.83135 -21.40979 -21.28389 -20.73290 -20.05849 -19.33754 -17.20680 -16.86107 -16.72275 -15.78417 -15.63666 -15.25157 -15.01683 -14.87164 -14.21919 -13.89626 -13.69654 -13.65141 -13.50001 -13.34813 -13.25469 -13.06252 -12.62527 -12.44617 -12.25625 -12.02004 -11.83164 -11.80867 -11.70728 -11.56379 -11.32225 -10.81234 -10.66758 -10.58752 -10.48836 -10.21100 -10.03472 -9.68858 -9.53632 -9.40169 -9.31653 -8.77388 -8.54277 -8.42528 -6.92081 -5.89277 -3.25010 1.42528 1.63243 2.37759 2.76443 3.04393 3.38328 3.48557 3.52259 3.59335 4.33046 4.59063 4.61980 4.86385 4.88614 5.02053 5.04768 5.06885 5.16011 5.16417 5.27854 5.33659 5.40143 5.48495 5.49242 5.78561 5.81331 5.88878 5.90018 5.97931 6.07554 6.10712 6.17143 6.32706 6.36170 6.56278 6.65035 6.66558 6.71204 6.73120 6.88211 7.02920 7.32544 7.87326 8.02209 8.38735 8.65811 8.99246 9.78023 10.14224 11.26721 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.004210 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.933032 B = 6648.599018 C = 8375.676080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.127 4.127 5 C 0.146 3.854 6 N -0.602 5.602 7 C -0.262 4.262 8 H 0.086 0.914 9 C 0.028 3.972 10 N -0.905 5.905 11 Si 0.881 3.119 12 H -0.287 1.287 13 H -0.304 1.304 14 H -0.272 1.272 15 C 0.121 3.879 16 C 0.134 3.866 17 H 0.090 0.910 18 N -0.727 5.727 19 C 0.505 3.495 20 O -0.516 6.516 21 C -0.063 4.063 22 C -0.203 4.203 23 C 0.079 3.921 24 N -0.364 5.364 25 C 0.103 3.897 26 N -0.284 5.284 27 C 0.144 3.856 28 Cl 0.005 6.995 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.393 0.607 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.182 0.818 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.983 11.557 10.694 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.167 4.167 5 C 0.020 3.980 6 N -0.325 5.325 7 C -0.390 4.390 8 H 0.104 0.896 9 C -0.172 4.172 10 N -0.548 5.548 11 Si 0.712 3.288 12 H -0.215 1.215 13 H -0.233 1.233 14 H -0.197 1.197 15 C -0.006 4.006 16 C 0.028 3.972 17 H 0.108 0.892 18 N -0.379 5.379 19 C 0.290 3.710 20 O -0.390 6.390 21 C -0.105 4.105 22 C -0.215 4.215 23 C -0.067 4.067 24 N -0.147 5.147 25 C -0.038 4.038 26 N -0.109 5.109 27 C -0.048 4.048 28 Cl 0.033 6.967 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.226 0.774 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.199 0.801 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.988 9.547 11.655 20.558 hybrid contribution 0.374 1.756 0.133 1.800 sum -13.615 11.303 11.788 21.262 Atomic orbital electron populations 1.21827 0.95541 1.01822 1.00862 1.21296 0.95046 0.99490 0.95249 0.91442 1.22072 0.98500 1.00526 0.95606 1.20974 0.91101 0.96539 0.89414 1.44283 1.48580 1.40492 0.99179 1.18897 1.09527 1.02957 1.07625 0.89633 1.25253 0.97366 0.96579 0.97963 1.69842 1.32513 1.21940 1.30479 0.86936 0.76022 0.84863 0.80960 1.21519 1.23290 1.19704 1.21683 0.91222 0.96936 0.90744 1.21718 0.95838 0.97409 0.82206 0.89169 1.46099 1.67106 1.14074 1.10671 1.20534 0.78572 0.87613 0.84272 1.90786 1.47996 1.16014 1.84246 1.19936 1.03392 0.96794 0.90341 1.19179 0.97421 1.04309 1.00597 1.22309 0.99576 0.93322 0.91501 1.48152 1.18115 1.26787 1.21607 1.21948 0.96386 1.02453 0.82990 1.77323 0.99989 1.21033 1.12548 1.22413 0.92380 0.96388 0.93625 1.98381 1.37090 1.95989 1.65286 0.93045 0.93018 0.92758 0.91671 0.92215 0.91726 0.95977 0.92854 0.96007 0.90373 0.77415 0.88179 0.88151 0.80097 0.90452 0.88937 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.02 37.16 0.34 -1.38 16 2 C -0.09 -1.34 2.27 -90.58 -0.21 -1.55 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -2.02 5.36 -26.61 -0.14 -2.17 16 5 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 6 N -0.60 -14.64 2.77 -172.32 -0.48 -15.11 16 7 C -0.26 -7.58 10.03 -15.06 -0.15 -7.73 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 9 C 0.03 0.83 5.23 -17.43 -0.09 0.74 16 10 N -0.91 -28.87 13.97 55.49 0.78 -28.10 16 11 Si 0.88 23.29 24.35 -169.99 -4.14 19.15 16 12 H -0.29 -7.56 6.62 56.52 0.37 -7.18 16 13 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 14 H -0.27 -6.94 6.63 56.52 0.37 -6.56 16 15 C 0.12 2.73 3.78 -3.71 -0.01 2.72 16 16 C 0.13 2.44 2.06 -67.82 -0.14 2.30 16 17 H 0.09 1.96 7.58 -51.92 -0.39 1.56 16 18 N -0.73 -10.72 4.37 -53.69 -0.23 -10.96 16 19 C 0.51 8.25 7.79 -10.98 -0.09 8.17 16 20 O -0.52 -11.34 15.70 5.56 0.09 -11.25 16 21 C -0.06 -0.74 6.04 -29.04 -0.18 -0.91 16 22 C -0.20 -2.78 4.60 -105.02 -0.48 -3.26 16 23 C 0.08 0.95 11.40 -17.22 -0.20 0.76 16 24 N -0.36 -4.50 4.01 -68.16 -0.27 -4.77 16 25 C 0.10 0.76 11.47 59.85 0.69 1.45 16 26 N -0.28 -4.35 12.58 32.95 0.41 -3.94 16 27 C 0.14 2.18 7.84 -17.30 -0.14 2.04 16 28 Cl 0.00 0.07 29.16 -51.86 -1.51 -1.45 16 29 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.26 7.93 -51.93 -0.41 0.84 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 37 H 0.02 0.48 7.08 -51.93 -0.37 0.12 16 38 H 0.08 2.07 4.50 -51.93 -0.23 1.84 16 39 H 0.39 4.21 8.31 -40.82 -0.34 3.87 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -38.36 377.40 -7.31 -45.66 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.81 Total: 1.10 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.82 Total: 3.98 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 0.20 Total: -62.88 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.14 Total: 19.15 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.51 Total: -1.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.36 -7.31 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968332390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.544 kcal (2) G-P(sol) polarization free energy of solvation -38.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds