Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47123 * 2 1 4 4 N 1.39926 * 125.75362 * 270.18344 * 3 2 1 5 5 C 1.30417 * 108.96063 * 180.27291 * 4 3 2 6 6 C 1.50695 * 125.97556 * 179.70883 * 5 4 3 7 7 C 1.41343 * 108.04614 * 359.74356 * 5 4 3 8 8 C 1.47296 * 126.43362 * 180.02562 * 7 5 4 9 9 O 1.21615 * 119.99844 * 269.97228 * 8 7 5 10 10 N 1.34779 * 120.00239 * 89.97549 * 8 7 5 11 11 C 1.46502 * 119.99890 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47222 * 324.99540 * 11 10 8 13 13 C 1.52995 * 109.47196 * 84.99891 * 11 10 8 14 14 C 1.53004 * 109.46661 * 204.99865 * 11 10 8 15 15 C 1.53939 * 113.73992 * 161.99670 * 14 11 10 16 16 N 1.47809 * 86.03896 * 222.08285 * 15 14 11 17 17 C 1.36942 * 134.46145 * 204.64994 * 16 15 14 18 18 H 1.08001 * 120.00047 * 179.86293 * 17 16 15 19 19 C 1.38811 * 119.99361 * 359.85819 * 17 16 15 20 20 N 1.31612 * 120.00808 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99503 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47091 * 120.00246 * 21 19 17 24 24 H 1.48498 * 109.47016 * 240.00326 * 21 19 17 25 25 C 1.47582 * 91.05056 * 24.54763 * 16 15 14 26 26 C 1.34351 * 125.74743 * 90.00026 * 3 2 1 27 27 Cl 1.73604 * 126.31818 * 0.02562 * 26 3 2 28 28 H 1.09002 * 109.47429 * 299.99687 * 1 2 3 29 29 H 1.09004 * 109.47300 * 60.00032 * 1 2 3 30 30 H 1.08996 * 109.47449 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46992 * 240.00474 * 2 1 3 32 32 H 1.08995 * 109.47522 * 120.00086 * 2 1 3 33 33 H 1.08999 * 109.47127 * 270.04011 * 6 5 4 34 34 H 1.08997 * 109.47214 * 30.04224 * 6 5 4 35 35 H 1.08996 * 109.47171 * 150.04237 * 6 5 4 36 36 H 0.97002 * 119.99831 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47269 * 55.80736 * 13 11 10 38 38 H 1.08997 * 109.46956 * 175.80464 * 13 11 10 39 39 H 1.08999 * 109.47037 * 295.80315 * 13 11 10 40 40 H 1.08999 * 112.94227 * 293.58356 * 14 11 10 41 41 H 1.09002 * 113.77264 * 336.34958 * 15 14 11 42 42 H 1.08999 * 113.77193 * 107.74897 * 15 14 11 43 43 H 0.96994 * 120.00253 * 179.97438 * 20 19 17 44 44 H 1.08995 * 113.77181 * 221.15308 * 25 16 15 45 45 H 1.08996 * 113.86784 * 89.76747 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2874 2.1533 -1.1355 5 6 2.7103 3.3281 -0.7588 6 6 3.1153 4.4575 -1.6706 7 6 2.7230 3.3564 0.6543 8 6 3.1310 4.4891 1.5029 9 8 4.2907 4.6006 1.8519 10 7 2.2192 5.4018 1.8928 11 6 2.6252 6.5287 2.7364 12 1 3.4041 6.2040 3.4262 13 6 3.1628 7.6578 1.8550 14 6 1.4181 7.0321 3.5305 15 6 1.7937 7.8971 4.7472 16 7 0.7423 7.1527 5.4718 17 6 -0.0417 7.4176 6.5629 18 1 -0.7591 6.6854 6.9030 19 6 0.0858 8.6273 7.2317 20 7 0.9597 9.5198 6.8171 21 14 -0.9832 8.9884 8.7205 22 1 -1.8770 7.8313 8.9806 23 1 -0.1191 9.2219 9.9054 24 1 -1.8029 10.1988 8.4594 25 6 0.8748 6.0108 4.5463 26 6 2.2799 2.1213 1.0904 27 17 2.1023 1.6170 2.7421 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.1798 4.3816 -1.8921 34 1 2.5459 4.3976 -2.5981 35 1 2.9131 5.4100 -1.1810 36 1 1.2943 5.3130 1.6142 37 1 2.4098 7.9319 1.1161 38 1 3.3951 8.5235 2.4752 39 1 4.0664 7.3226 1.3459 40 1 0.6482 7.4745 2.8984 41 1 2.8003 7.7135 5.1229 42 1 1.5734 8.9567 4.6177 43 1 1.0485 10.3651 7.2843 44 1 -0.0777 5.5672 4.2566 45 1 1.6103 5.2707 4.8614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970897490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = 59.297704 kcal Electronic energy + Delta-G solvation = -27483.649178 eV Core-core repulsion = 23564.593988 eV Total energy + Delta-G solvation = -3919.055191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61557 -40.78381 -39.47247 -38.14352 -36.13190 -35.94016 -34.12787 -32.40008 -32.25519 -30.69989 -29.29638 -28.69636 -26.59728 -25.80459 -25.01681 -23.43533 -22.38977 -21.63712 -21.17878 -20.56001 -18.85077 -18.68492 -17.65913 -17.32245 -16.85880 -16.54258 -16.30330 -15.87579 -15.71561 -15.20838 -15.17200 -14.85782 -14.61889 -14.30897 -14.11728 -13.99527 -13.64739 -13.36964 -13.34678 -13.24020 -13.14931 -13.06296 -12.94144 -12.87435 -12.68052 -12.67238 -12.34663 -12.27069 -11.99568 -11.83508 -11.79304 -11.56979 -11.20815 -10.95852 -10.86439 -10.36271 -10.03752 -9.80440 -8.90225 -7.89403 -5.22580 0.16337 0.28146 1.19133 1.41089 1.45786 1.47020 1.51135 1.57005 2.27009 2.48024 3.24269 3.31123 3.41032 3.69402 3.74337 3.96841 3.97857 4.01363 4.04548 4.23703 4.26533 4.32813 4.49719 4.61575 4.67516 4.71250 4.74067 4.79172 4.79985 4.89052 4.90680 4.96558 4.99818 5.14714 5.16335 5.27228 5.31946 5.37844 5.53589 5.54678 5.57101 5.68336 5.95818 6.32335 6.58182 6.93751 7.24422 7.61990 8.58168 9.27756 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002840 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.608242 B = 9857.703580 C =11035.483977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.344 5.344 4 N -0.284 5.284 5 C 0.117 3.883 6 C -0.077 4.077 7 C -0.279 4.279 8 C 0.604 3.396 9 O -0.571 6.571 10 N -0.695 5.695 11 C 0.162 3.838 12 H 0.062 0.938 13 C -0.152 4.152 14 C -0.109 4.109 15 C 0.172 3.828 16 N -0.643 5.643 17 C -0.235 4.235 18 H 0.082 0.918 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.289 1.289 25 C 0.128 3.872 26 C 0.156 3.844 27 Cl 0.018 6.982 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.012 0.988 42 H 0.048 0.952 43 H 0.249 0.751 44 H 0.058 0.942 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 -18.370 -20.096 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.126 5.126 4 N -0.108 5.108 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.295 4.295 8 C 0.389 3.611 9 O -0.450 6.450 10 N -0.345 5.345 11 C 0.057 3.943 12 H 0.081 0.919 13 C -0.210 4.210 14 C -0.128 4.128 15 C 0.046 3.954 16 N -0.370 5.370 17 C -0.364 4.364 18 H 0.100 0.900 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.806 3.194 22 H -0.190 1.190 23 H -0.222 1.222 24 H -0.216 1.216 25 C 0.003 3.997 26 C -0.002 4.002 27 Cl 0.046 6.954 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.248 0.752 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.030 0.970 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.490 -19.088 -20.419 27.956 hybrid contribution -0.445 0.679 2.182 2.328 sum 0.045 -18.410 -18.237 25.913 Atomic orbital electron populations 1.22164 0.92468 1.04982 1.02671 1.22310 0.96728 0.75222 1.06670 1.48934 1.49160 1.13321 1.01175 1.77221 1.23606 1.04116 1.05827 1.22674 0.95977 0.94905 0.91313 1.20415 1.03060 0.92318 0.97781 1.19787 1.19887 0.95135 0.94722 1.17241 0.84636 0.80928 0.78332 1.90777 1.20108 1.76850 1.57246 1.45939 1.12381 1.25089 1.51097 1.20828 0.95858 0.86115 0.91545 0.91945 1.22048 1.01419 0.97498 1.00026 1.23451 0.97072 0.97504 0.94812 1.22127 0.89959 0.96343 0.86954 1.46421 1.41407 1.16377 1.32781 1.19459 1.12858 1.00253 1.03815 0.90017 1.25613 1.01035 0.96814 1.02532 1.69995 1.38998 1.08123 1.42995 0.85027 0.77843 0.77839 0.78714 1.19021 1.22159 1.21608 1.22652 0.98042 0.90882 0.88145 1.22047 1.01731 0.92037 0.84395 1.98462 1.95881 1.90839 1.10226 0.92662 0.92117 0.87433 0.86174 0.87174 0.89158 0.88291 0.89581 0.75237 0.90455 0.91717 0.92566 0.87594 0.97019 0.93393 0.94227 0.92372 0.95112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.24 71.98 0.74 -0.76 16 2 C 0.11 1.21 6.97 86.38 0.60 1.81 16 3 N -0.34 -6.61 3.58 -336.06 -1.20 -7.81 16 4 N -0.28 -6.11 12.49 -46.66 -0.58 -6.69 16 5 C 0.12 2.54 7.26 43.53 0.32 2.86 16 6 C -0.08 -1.19 10.28 71.23 0.73 -0.46 16 7 C -0.28 -6.99 5.88 -20.12 -0.12 -7.11 16 8 C 0.60 17.46 7.16 86.63 0.62 18.08 16 9 O -0.57 -21.09 16.77 -4.08 -0.07 -21.15 16 10 N -0.69 -17.87 4.94 -445.93 -2.20 -20.07 16 11 C 0.16 4.87 2.29 44.99 0.10 4.98 16 12 H 0.06 2.26 7.48 -2.39 -0.02 2.24 16 13 C -0.15 -3.99 9.46 71.98 0.68 -3.30 16 14 C -0.11 -3.79 3.35 -10.14 -0.03 -3.82 16 15 C 0.17 8.13 6.90 86.44 0.60 8.73 16 16 N -0.64 -33.30 3.70 -716.17 -2.65 -35.95 16 17 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 20 N -0.95 -57.81 11.39 21.65 0.25 -57.57 16 21 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 C 0.13 5.08 8.38 86.49 0.72 5.81 16 26 C 0.16 3.55 7.54 84.32 0.64 4.19 16 27 Cl 0.02 0.39 28.56 -2.72 -0.08 0.31 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 0.94 7.77 -2.39 -0.02 0.93 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.27 8.00 -2.39 -0.02 1.25 16 36 H 0.41 8.73 8.59 -92.71 -0.80 7.93 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.80 7.99 -2.39 -0.02 1.78 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.01 0.60 8.04 -2.39 -0.02 0.58 16 42 H 0.05 2.51 7.16 -2.39 -0.02 2.49 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -75.05 394.92 2.65 -72.40 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.21 Total: 13.30 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.96 Total: 15.12 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -6.40 Total: -128.10 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.07 Total: -21.15 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.31 kcal Total: -75.05 2.65 -72.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970897490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.701 kcal (2) G-P(sol) polarization free energy of solvation -75.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds