Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 N 1.46507 * 109.46705 * 119.99412 * 2 1 3 5 5 N 1.39922 * 125.74896 * 300.00022 * 4 2 1 6 6 C 1.30420 * 108.95442 * 179.71658 * 5 4 2 7 7 C 1.41338 * 108.05132 * 0.44277 * 6 5 4 8 8 C 1.47294 * 126.43950 * 179.81623 * 7 6 5 9 9 O 1.21618 * 120.00585 * 213.12107 * 8 7 6 10 10 N 1.34782 * 119.99542 * 33.12354 * 8 7 6 11 11 C 1.47420 * 125.65250 * 355.77143 * 10 8 7 12 12 C 1.54910 * 104.83602 * 155.83629 * 11 10 8 13 13 H 1.08998 * 111.00235 * 278.94150 * 12 11 10 14 14 N 1.46501 * 111.00460 * 155.08237 * 12 11 10 15 15 C 1.36936 * 119.99563 * 92.80840 * 14 12 11 16 16 H 1.07997 * 120.00299 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99959 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99719 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00328 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46924 * 60.00019 * 19 17 15 21 21 H 1.48504 * 109.47027 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47015 * 299.99940 * 19 17 15 23 23 C 1.55164 * 101.57753 * 37.00873 * 12 11 10 24 24 C 1.47025 * 125.64348 * 175.73402 * 10 8 7 25 25 H 1.08993 * 109.88425 * 61.67391 * 24 10 8 26 26 C 1.53004 * 109.88347 * 300.50516 * 24 10 8 27 27 C 1.34346 * 125.74409 * 120.00445 * 4 2 1 28 28 Cl 1.73601 * 126.32334 * 359.97438 * 27 4 2 29 29 H 1.09004 * 109.47678 * 300.00417 * 1 2 3 30 30 H 1.09002 * 109.47133 * 60.00582 * 1 2 3 31 31 H 1.08998 * 109.47452 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47208 * 239.99401 * 2 1 3 33 33 H 1.08994 * 109.47676 * 59.99688 * 3 2 1 34 34 H 1.09008 * 109.47009 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47319 * 299.99320 * 3 2 1 36 36 H 1.08004 * 125.97196 * 180.26888 * 6 5 4 37 37 H 1.09004 * 110.36509 * 36.99717 * 11 10 8 38 38 H 1.09002 * 110.36652 * 274.68131 * 11 10 8 39 39 H 0.96998 * 119.99821 * 272.80385 * 14 12 11 40 40 H 0.96999 * 120.00051 * 180.02562 * 18 17 15 41 41 H 1.09006 * 110.71431 * 82.86023 * 23 12 11 42 42 H 1.09003 * 110.71924 * 206.13163 * 23 12 11 43 43 H 1.08997 * 109.47209 * 302.19506 * 26 24 10 44 44 H 1.09003 * 109.46581 * 62.19777 * 26 24 10 45 45 H 1.09001 * 109.46925 * 182.19116 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 7 1.7553 -0.3187 2.5194 6 6 2.3441 -1.1620 3.3214 7 6 3.0256 -2.1151 2.5311 8 6 3.8270 -3.2483 3.0242 9 8 4.8015 -3.6216 2.3996 10 7 3.4802 -3.8717 4.1678 11 6 2.3820 -3.4710 5.0659 12 6 1.9974 -4.7658 5.8244 13 1 1.3440 -5.3939 5.2189 14 7 1.3756 -4.4541 7.1138 15 6 0.0135 -4.3517 7.2100 16 1 -0.6024 -4.5003 6.3353 17 6 -0.5757 -4.0558 8.4315 18 7 0.1750 -3.8732 9.4972 19 14 -2.4338 -3.9153 8.5627 20 1 -3.0567 -5.2038 8.1667 21 1 -2.8082 -3.5949 9.9636 22 1 -2.9134 -2.8362 7.6623 23 6 3.3837 -5.4341 6.0225 24 6 4.1341 -5.0646 4.7256 25 1 5.1774 -4.8441 4.9510 26 6 4.0474 -6.2205 3.7270 27 6 2.7939 -1.7874 1.2077 28 17 3.3940 -2.6370 -0.1822 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3180 -1.1348 4.4008 37 1 1.5339 -3.1040 4.4878 38 1 2.7235 -2.7085 5.7659 39 1 1.9288 -4.3204 7.8992 40 1 -0.2367 -3.6668 10.3509 41 1 3.8910 -5.0187 6.8933 42 1 3.2810 -6.5154 6.1140 43 1 3.0019 -6.4208 3.4930 44 1 4.5793 -5.9526 2.8141 45 1 4.4995 -7.1116 4.1626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989238354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = 50.441643 kcal Electronic energy + Delta-G solvation = -27916.744627 eV Core-core repulsion = 23997.305409 eV Total energy + Delta-G solvation = -3919.439218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61237 -39.62049 -37.26871 -37.04536 -35.97124 -34.15741 -31.96875 -31.31603 -30.81713 -29.63047 -28.29263 -27.69068 -25.47783 -24.19147 -23.60412 -22.94010 -21.14230 -20.53393 -20.00449 -18.84238 -17.57575 -17.35361 -16.55829 -15.86167 -15.53301 -15.25527 -14.96081 -14.61580 -14.48305 -14.05557 -13.75549 -13.38532 -13.26003 -13.14428 -12.93911 -12.86391 -12.72222 -12.63815 -12.36151 -12.19840 -12.08698 -11.84752 -11.75858 -11.71371 -11.38188 -11.17581 -10.97850 -10.89120 -10.71590 -10.61245 -10.27117 -10.00656 -9.77989 -9.61962 -9.58605 -9.01013 -8.78930 -8.25989 -7.09262 -5.85533 -3.16282 1.16931 1.23763 2.14791 2.28461 3.16417 3.39980 3.44832 3.45458 3.47978 4.03032 4.45751 4.50185 4.54081 4.64661 4.80716 5.01412 5.12090 5.14686 5.17068 5.21233 5.29859 5.33893 5.37537 5.46767 5.50635 5.62419 5.66830 5.74294 5.78043 5.88351 5.89339 6.13455 6.16278 6.22880 6.24144 6.32737 6.40906 6.48184 6.57741 6.72072 6.87037 7.30628 7.62919 7.87081 8.31967 8.47712 9.44173 9.97743 10.32817 11.36314 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.003667 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.873418 B = 7633.480596 C = 9632.715189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.161 4.161 4 N -0.348 5.348 5 N -0.269 5.269 6 C 0.092 3.908 7 C -0.257 4.257 8 C 0.606 3.394 9 O -0.543 6.543 10 N -0.603 5.603 11 C 0.069 3.931 12 C 0.174 3.826 13 H 0.067 0.933 14 N -0.711 5.711 15 C -0.249 4.249 16 H 0.071 0.929 17 C -0.006 4.006 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.138 4.138 24 C 0.142 3.858 25 H 0.071 0.929 26 C -0.160 4.160 27 C 0.173 3.827 28 Cl 0.016 6.984 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.202 0.798 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 5.725 -19.468 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.218 4.218 4 N -0.132 5.132 5 N -0.089 5.089 6 C -0.094 4.094 7 C -0.273 4.273 8 C 0.394 3.606 9 O -0.422 6.422 10 N -0.336 5.336 11 C -0.057 4.057 12 C 0.062 3.938 13 H 0.085 0.915 14 N -0.351 5.351 15 C -0.380 4.380 16 H 0.089 0.911 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.177 4.177 24 C 0.039 3.961 25 H 0.089 0.911 26 C -0.219 4.219 27 C 0.015 3.985 28 Cl 0.044 6.956 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.219 0.781 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.987 6.610 -20.167 21.801 hybrid contribution -0.395 -0.527 0.330 0.737 sum 4.592 6.083 -19.836 21.250 Atomic orbital electron populations 1.22142 0.92401 1.03469 1.03911 1.21539 0.96329 0.94322 0.83170 1.22133 1.01965 0.93846 1.03885 1.48910 1.37568 1.19803 1.06892 1.77315 1.23691 1.22880 0.85051 1.24310 0.93243 0.91188 1.00705 1.19856 1.12835 1.04346 0.90270 1.16677 0.83326 0.80902 0.79675 1.90753 1.27294 1.66660 1.57487 1.48360 1.34170 1.28854 1.22195 1.23634 0.88247 1.01541 0.92275 1.21275 0.91751 0.91889 0.88925 0.91495 1.42311 1.04502 1.83712 1.04548 1.19201 0.82851 1.41323 0.94608 0.91061 1.24744 0.97855 1.02059 0.95658 1.69647 1.34114 1.54288 0.99619 0.86284 0.85339 0.77928 0.76717 1.21182 1.21636 1.21137 1.23041 0.97295 1.01668 0.95722 1.21470 0.96686 0.84760 0.93232 0.91107 1.22127 1.02277 0.97385 1.00063 1.21935 0.96159 0.89998 0.90374 1.98427 1.85262 1.73704 1.38211 0.90542 0.90293 0.91760 0.87862 0.90610 0.91867 0.90285 0.78135 0.91051 0.91182 0.77830 0.93283 0.90552 0.90169 0.92473 0.91571 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.44 37.16 0.35 -0.90 16 2 C 0.15 1.28 3.66 -67.93 -0.25 1.03 16 3 C -0.16 -1.18 9.44 37.16 0.35 -0.83 16 4 N -0.35 -4.29 3.25 -51.12 -0.17 -4.46 16 5 N -0.27 -3.76 12.33 30.87 0.38 -3.38 16 6 C 0.09 1.32 10.05 -16.97 -0.17 1.15 16 7 C -0.26 -3.92 5.68 -105.02 -0.60 -4.51 16 8 C 0.61 10.11 7.44 -12.58 -0.09 10.02 16 9 O -0.54 -10.07 15.42 5.26 0.08 -9.99 16 10 N -0.60 -9.58 3.08 -164.32 -0.51 -10.08 16 11 C 0.07 1.14 5.04 -2.53 -0.01 1.13 16 12 C 0.17 3.19 3.71 -65.78 -0.24 2.94 16 13 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 14 N -0.71 -16.39 5.24 -51.35 -0.27 -16.66 16 15 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 19 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.14 -2.13 6.14 -24.89 -0.15 -2.28 16 24 C 0.14 2.10 3.47 -66.95 -0.23 1.87 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 C -0.16 -2.20 9.05 37.16 0.34 -1.87 16 27 C 0.17 2.38 7.51 -16.43 -0.12 2.26 16 28 Cl 0.02 0.19 27.59 -51.86 -1.43 -1.24 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.75 7.23 -51.93 -0.38 0.38 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.20 2.66 6.42 -52.48 -0.34 2.33 16 37 H 0.07 1.20 6.54 -51.93 -0.34 0.86 16 38 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 39 H 0.39 9.50 7.76 -40.82 -0.32 9.19 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.08 1.18 8.00 -51.93 -0.42 0.77 16 42 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.99 6.90 -51.93 -0.36 0.63 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -30.58 382.85 -8.24 -38.82 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.72 Total: 7.61 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.08 Total: 3.11 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.16 Total: -60.58 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.43 Total: -1.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.58 -8.24 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989238354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.260 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds