Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 N 1.46507 * 109.46705 * 119.99412 * 2 1 3 5 5 N 1.39922 * 125.74896 * 300.00022 * 4 2 1 6 6 C 1.30420 * 108.95442 * 179.71658 * 5 4 2 7 7 C 1.41338 * 108.05132 * 0.44277 * 6 5 4 8 8 C 1.47294 * 126.43950 * 179.81623 * 7 6 5 9 9 O 1.21618 * 120.00585 * 213.12107 * 8 7 6 10 10 N 1.34782 * 119.99542 * 33.12354 * 8 7 6 11 11 C 1.47420 * 125.65250 * 355.77143 * 10 8 7 12 12 C 1.54910 * 104.83602 * 155.83629 * 11 10 8 13 13 H 1.08998 * 111.00235 * 278.94150 * 12 11 10 14 14 N 1.46501 * 111.00460 * 155.08237 * 12 11 10 15 15 C 1.36936 * 119.99563 * 92.80840 * 14 12 11 16 16 H 1.07997 * 120.00299 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99959 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99719 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00328 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46924 * 60.00019 * 19 17 15 21 21 H 1.48504 * 109.47027 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47015 * 299.99940 * 19 17 15 23 23 C 1.55164 * 101.57753 * 37.00873 * 12 11 10 24 24 C 1.47025 * 125.64348 * 175.73402 * 10 8 7 25 25 H 1.08993 * 109.88425 * 61.67391 * 24 10 8 26 26 C 1.53004 * 109.88347 * 300.50516 * 24 10 8 27 27 C 1.34346 * 125.74409 * 120.00445 * 4 2 1 28 28 Cl 1.73601 * 126.32334 * 359.97438 * 27 4 2 29 29 H 1.09004 * 109.47678 * 300.00417 * 1 2 3 30 30 H 1.09002 * 109.47133 * 60.00582 * 1 2 3 31 31 H 1.08998 * 109.47452 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47208 * 239.99401 * 2 1 3 33 33 H 1.08994 * 109.47676 * 59.99688 * 3 2 1 34 34 H 1.09008 * 109.47009 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47319 * 299.99320 * 3 2 1 36 36 H 1.08004 * 125.97196 * 180.26888 * 6 5 4 37 37 H 1.09004 * 110.36509 * 36.99717 * 11 10 8 38 38 H 1.09002 * 110.36652 * 274.68131 * 11 10 8 39 39 H 0.96998 * 119.99821 * 272.80385 * 14 12 11 40 40 H 0.96999 * 120.00051 * 180.02562 * 18 17 15 41 41 H 1.09006 * 110.71431 * 82.86023 * 23 12 11 42 42 H 1.09003 * 110.71924 * 206.13163 * 23 12 11 43 43 H 1.08997 * 109.47209 * 302.19506 * 26 24 10 44 44 H 1.09003 * 109.46581 * 62.19777 * 26 24 10 45 45 H 1.09001 * 109.46925 * 182.19116 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 7 1.7553 -0.3187 2.5194 6 6 2.3441 -1.1620 3.3214 7 6 3.0256 -2.1151 2.5311 8 6 3.8270 -3.2483 3.0242 9 8 4.8015 -3.6216 2.3996 10 7 3.4802 -3.8717 4.1678 11 6 2.3820 -3.4710 5.0659 12 6 1.9974 -4.7658 5.8244 13 1 1.3440 -5.3939 5.2189 14 7 1.3756 -4.4541 7.1138 15 6 0.0135 -4.3517 7.2100 16 1 -0.6024 -4.5003 6.3353 17 6 -0.5757 -4.0558 8.4315 18 7 0.1750 -3.8732 9.4972 19 14 -2.4338 -3.9153 8.5627 20 1 -3.0567 -5.2038 8.1667 21 1 -2.8082 -3.5949 9.9636 22 1 -2.9134 -2.8362 7.6623 23 6 3.3837 -5.4341 6.0225 24 6 4.1341 -5.0646 4.7256 25 1 5.1774 -4.8441 4.9510 26 6 4.0474 -6.2205 3.7270 27 6 2.7939 -1.7874 1.2077 28 17 3.3940 -2.6370 -0.1822 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3180 -1.1348 4.4008 37 1 1.5339 -3.1040 4.4878 38 1 2.7235 -2.7085 5.7659 39 1 1.9288 -4.3204 7.8992 40 1 -0.2367 -3.6668 10.3509 41 1 3.8910 -5.0187 6.8933 42 1 3.2810 -6.5154 6.1140 43 1 3.0019 -6.4208 3.4930 44 1 4.5793 -5.9526 2.8141 45 1 4.4995 -7.1116 4.1626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989238354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = 32.318443 kcal Electronic energy + Delta-G solvation = -27917.530508 eV Core-core repulsion = 23997.305409 eV Total energy + Delta-G solvation = -3920.225099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67461 -40.91440 -38.62409 -38.09043 -36.77015 -35.92581 -33.31254 -32.97629 -31.82728 -30.72495 -29.91830 -28.28797 -26.74982 -25.87252 -24.81750 -24.08076 -22.43259 -21.57034 -21.30141 -20.04535 -19.25794 -18.57408 -17.75958 -17.07017 -16.82297 -16.59201 -16.13348 -15.93177 -15.53235 -15.31194 -15.15294 -14.74697 -14.56445 -14.43422 -14.16665 -14.07133 -13.74448 -13.40633 -13.31595 -13.15817 -13.08203 -13.04009 -12.99142 -12.93371 -12.73461 -12.45090 -12.27160 -12.16483 -12.10074 -12.02392 -11.89534 -11.67498 -11.40164 -11.03162 -10.82989 -10.58312 -9.92298 -9.57297 -9.00313 -7.91326 -5.20538 0.12870 0.16090 0.99929 1.36840 1.52369 1.53292 1.59297 1.91963 2.21107 2.59629 3.15058 3.40373 3.51666 3.70220 3.80937 3.89261 3.91884 3.94956 4.01356 4.04039 4.16738 4.28123 4.39774 4.52947 4.56660 4.59601 4.62467 4.72037 4.73427 4.77961 4.82931 4.95649 5.03347 5.08896 5.16318 5.20838 5.24448 5.29494 5.39798 5.51153 5.53031 5.58674 6.23800 6.29839 6.55411 7.17854 7.38100 8.09556 8.34264 9.31179 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.003667 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.873418 B = 7633.480596 C = 9632.715189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 C -0.155 4.155 4 N -0.338 5.338 5 N -0.280 5.280 6 C 0.088 3.912 7 C -0.282 4.282 8 C 0.606 3.394 9 O -0.565 6.565 10 N -0.602 5.602 11 C 0.085 3.915 12 C 0.168 3.832 13 H 0.063 0.937 14 N -0.720 5.720 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.965 5.965 19 Si 0.965 3.035 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.279 1.279 23 C -0.125 4.125 24 C 0.141 3.859 25 H 0.076 0.924 26 C -0.152 4.152 27 C 0.173 3.827 28 Cl 0.030 6.970 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.205 0.795 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.378 0.622 40 H 0.251 0.749 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.063 5.876 -21.467 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 C -0.213 4.213 4 N -0.121 5.121 5 N -0.101 5.101 6 C -0.098 4.098 7 C -0.298 4.298 8 C 0.396 3.604 9 O -0.445 6.445 10 N -0.334 5.334 11 C -0.041 4.041 12 C 0.057 3.943 13 H 0.081 0.919 14 N -0.359 5.359 15 C -0.374 4.374 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.615 5.615 19 Si 0.794 3.206 20 H -0.206 1.206 21 H -0.224 1.224 22 H -0.206 1.206 23 C -0.164 4.164 24 C 0.038 3.962 25 H 0.094 0.906 26 C -0.210 4.210 27 C 0.013 3.987 28 Cl 0.058 6.942 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.221 0.779 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.653 6.762 -22.223 23.690 hybrid contribution -0.248 -0.564 0.793 1.005 sum 4.405 6.198 -21.429 22.738 Atomic orbital electron populations 1.22135 0.91480 1.03090 1.04731 1.22025 0.97121 0.95091 0.82272 1.22125 1.01519 0.92883 1.04758 1.49285 1.36419 1.19164 1.07247 1.77272 1.23860 1.23031 0.85904 1.24346 0.93292 0.91176 1.00985 1.19850 1.14069 1.04695 0.91231 1.16851 0.83117 0.81034 0.79425 1.90733 1.28214 1.67495 1.58041 1.48352 1.33851 1.29169 1.22040 1.23280 0.88476 1.00283 0.92044 1.21403 0.92968 0.92777 0.87104 0.91924 1.42399 1.03662 1.83981 1.05906 1.19545 0.84308 1.39096 0.94468 0.90597 1.25429 1.01510 1.03169 0.95663 1.69786 1.35419 1.56429 0.99820 0.85352 0.81088 0.78030 0.76121 1.20578 1.22420 1.20552 1.22941 0.95199 1.02217 0.96048 1.21561 0.96699 0.84820 0.93130 0.90607 1.22061 1.02024 0.97719 0.99240 1.22042 0.95918 0.90239 0.90497 1.98430 1.85082 1.73456 1.37226 0.92050 0.87120 0.92701 0.86119 0.91968 0.92507 0.87152 0.77872 0.91267 0.91487 0.78897 0.94007 0.90592 0.88818 0.92890 0.92808 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.44 71.98 0.68 -1.44 16 2 C 0.13 2.07 3.66 44.99 0.16 2.23 16 3 C -0.16 -1.96 9.44 71.98 0.68 -1.28 16 4 N -0.34 -7.98 3.25 -315.63 -1.03 -9.01 16 5 N -0.28 -7.70 12.33 -56.25 -0.69 -8.39 16 6 C 0.09 2.51 10.05 85.67 0.86 3.38 16 7 C -0.28 -8.51 5.68 -20.12 -0.11 -8.62 16 8 C 0.61 19.96 7.44 86.62 0.64 20.60 16 9 O -0.56 -20.61 15.42 -4.09 -0.06 -20.68 16 10 N -0.60 -18.74 3.08 -792.03 -2.44 -21.18 16 11 C 0.09 2.79 5.04 86.86 0.44 3.23 16 12 C 0.17 6.05 3.71 46.39 0.17 6.22 16 13 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 14 N -0.72 -33.15 5.24 -316.37 -1.66 -34.81 16 15 C -0.24 -12.54 9.96 84.03 0.84 -11.71 16 16 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 17 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 18 N -0.96 -56.18 13.06 21.65 0.28 -55.89 16 19 Si 0.96 44.27 29.55 68.60 2.03 46.29 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 C -0.13 -3.70 6.14 31.79 0.20 -3.50 16 24 C 0.14 3.99 3.47 45.34 0.16 4.15 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 C -0.15 -3.93 9.05 71.98 0.65 -3.28 16 27 C 0.17 4.59 7.51 84.32 0.63 5.23 16 28 Cl 0.03 0.69 27.59 -2.72 -0.08 0.61 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 1.46 7.23 -2.39 -0.02 1.44 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.20 5.46 6.42 -2.91 -0.02 5.45 16 37 H 0.07 2.31 6.54 -2.39 -0.02 2.29 16 38 H 0.07 2.26 7.70 -2.39 -0.02 2.24 16 39 H 0.38 18.72 7.76 -92.71 -0.72 18.00 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.08 2.28 8.00 -2.38 -0.02 2.26 16 42 H 0.09 2.53 7.83 -2.39 -0.02 2.51 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.54 6.90 -2.39 -0.02 1.52 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.01 382.85 3.11 -61.90 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.29 Total: 28.99 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 6.47 Total: 12.15 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -5.54 Total: -129.28 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.06 Total: -20.68 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: 0.69 SS G_CDS: -0.08 Total: 0.61 kcal Total: -65.01 3.11 -61.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989238354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.222 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds