Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 N 1.46502 * 109.47149 * 119.99289 * 2 1 3 5 5 N 1.39932 * 125.75159 * 299.98107 * 4 2 1 6 6 C 1.30404 * 108.96000 * 180.02562 * 5 4 2 7 7 C 1.41338 * 108.05164 * 359.97438 * 6 5 4 8 8 C 1.47300 * 126.43767 * 179.97438 * 7 6 5 9 9 O 1.21621 * 119.99983 * 180.02562 * 8 7 6 10 10 N 1.34769 * 120.00208 * 0.03234 * 8 7 6 11 11 C 1.47028 * 125.64746 * 359.97055 * 10 8 7 12 12 C 1.54326 * 107.27035 * 178.98293 * 11 10 8 13 13 H 1.08994 * 110.72533 * 96.34527 * 12 11 10 14 14 N 1.46505 * 110.71655 * 219.44280 * 12 11 10 15 15 C 1.36931 * 119.99788 * 273.54427 * 14 12 11 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 12 18 18 N 1.31617 * 119.99873 * 180.27450 * 17 15 14 19 19 Si 1.86800 * 120.00209 * 0.27770 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99559 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00079 * 19 17 15 22 22 H 1.48507 * 109.46904 * 329.99901 * 19 17 15 23 23 C 1.55158 * 102.94077 * 337.80309 * 12 11 10 24 24 C 1.47423 * 125.65219 * 180.02562 * 10 8 7 25 25 H 1.09006 * 110.36813 * 85.13817 * 24 10 8 26 26 C 1.52998 * 110.36799 * 322.93133 * 24 10 8 27 27 C 1.34353 * 125.75103 * 120.28910 * 4 2 1 28 28 Cl 1.73601 * 126.31611 * 359.96895 * 27 4 2 29 29 H 1.09000 * 109.47635 * 300.00206 * 1 2 3 30 30 H 1.09007 * 109.46924 * 60.00611 * 1 2 3 31 31 H 1.09002 * 109.47073 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47536 * 239.99841 * 2 1 3 33 33 H 1.09007 * 109.47089 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46959 * 299.99281 * 3 2 1 35 35 H 1.09001 * 109.47699 * 59.99660 * 3 2 1 36 36 H 1.08003 * 125.97858 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.88116 * 59.56115 * 11 10 8 38 38 H 1.09006 * 109.87821 * 298.39605 * 11 10 8 39 39 H 0.97000 * 119.99792 * 93.54222 * 14 12 11 40 40 H 0.97000 * 120.00553 * 180.02562 * 18 17 15 41 41 H 1.09003 * 111.00099 * 153.58417 * 23 12 11 42 42 H 1.09003 * 111.00670 * 277.43261 * 23 12 11 43 43 H 1.09002 * 109.47148 * 61.44670 * 26 24 10 44 44 H 1.09000 * 109.47516 * 181.45338 * 26 24 10 45 45 H 1.09003 * 109.46997 * 301.45090 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 7 1.7558 -0.3184 2.5194 6 6 2.3499 -1.1577 3.3214 7 6 3.0258 -2.1149 2.5311 8 6 3.8278 -3.2477 3.0243 9 8 4.3620 -4.0037 2.2355 10 7 3.9695 -3.4466 4.3497 11 6 3.3815 -2.6134 5.4088 12 6 3.7901 -3.2353 6.7609 13 1 4.6705 -2.7356 7.1649 14 7 2.6798 -3.1769 7.7149 15 6 2.4954 -2.0585 8.4832 16 1 3.1682 -1.2193 8.3856 17 6 1.4399 -2.0009 9.3830 18 7 1.2595 -0.9238 10.1176 19 14 0.2758 -3.4521 9.5514 20 1 0.7876 -4.3790 10.5926 21 1 -1.0710 -2.9636 9.9421 22 1 0.1855 -4.1674 8.2531 23 6 4.1131 -4.7053 6.3838 24 6 4.7406 -4.5349 4.9777 25 1 5.7913 -4.2565 5.0604 26 6 4.5950 -5.8258 4.1696 27 6 2.7985 -1.7842 1.2078 28 17 3.4051 -2.6291 -0.1821 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9565 0.8899 36 1 2.3285 -1.1274 4.4008 37 1 2.2954 -2.6082 5.3163 38 1 3.7667 -1.5963 5.3371 39 1 2.0753 -3.9305 7.8022 40 1 0.5222 -0.8837 10.7466 41 1 4.8295 -5.1392 7.0814 42 1 3.2042 -5.3052 6.3360 43 1 4.9905 -5.6725 3.1655 44 1 5.1490 -6.6261 4.6601 45 1 3.5414 -6.0986 4.1073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989238356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = 63.623905 kcal Electronic energy + Delta-G solvation = -27997.896261 eV Core-core repulsion = 24079.028669 eV Total energy + Delta-G solvation = -3918.867592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61890 -39.71431 -37.31709 -37.01046 -35.98312 -34.29233 -32.12857 -31.55424 -30.78176 -29.58790 -28.88831 -27.68850 -25.64898 -24.13636 -23.53074 -22.67316 -20.99927 -20.70176 -20.14103 -19.01441 -17.68523 -17.39751 -16.48507 -16.27110 -15.75517 -15.19334 -14.80115 -14.61177 -14.51552 -14.04456 -13.92177 -13.53496 -13.38445 -13.30019 -12.99547 -12.73092 -12.64409 -12.61712 -12.20306 -12.16922 -12.09196 -11.99783 -11.82511 -11.74808 -11.49685 -11.35611 -11.10264 -10.83728 -10.79102 -10.69291 -10.39553 -10.10076 -9.66791 -9.58705 -9.40613 -9.02418 -8.82466 -8.28197 -7.41602 -5.85821 -3.23982 1.19070 1.19770 2.12928 2.30156 3.20646 3.32765 3.35811 3.41807 3.53848 4.03271 4.45873 4.51477 4.53436 4.62130 4.75566 4.99630 5.02601 5.08236 5.11345 5.15092 5.20572 5.34426 5.36697 5.38189 5.43677 5.51717 5.59515 5.75382 5.76169 5.76873 5.81556 5.94054 6.01927 6.09773 6.24331 6.34191 6.37128 6.40884 6.46192 6.66217 6.80215 7.33064 7.81135 7.89186 8.32856 8.46973 9.09580 9.81913 9.99954 11.31695 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.003679 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.763229 B = 7609.447079 C = 9423.746545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.161 4.161 4 N -0.349 5.349 5 N -0.269 5.269 6 C 0.081 3.919 7 C -0.264 4.264 8 C 0.607 3.393 9 O -0.543 6.543 10 N -0.605 5.605 11 C 0.066 3.934 12 C 0.177 3.823 13 H 0.076 0.924 14 N -0.738 5.738 15 C -0.255 4.255 16 H 0.093 0.907 17 C 0.012 3.988 18 N -0.928 5.928 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.140 4.140 24 C 0.141 3.859 25 H 0.075 0.925 26 C -0.163 4.163 27 C 0.178 3.822 28 Cl 0.020 6.980 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.214 0.786 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -1.273 -21.589 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.132 5.132 5 N -0.089 5.089 6 C -0.106 4.106 7 C -0.280 4.280 8 C 0.396 3.604 9 O -0.422 6.422 10 N -0.338 5.338 11 C -0.060 4.060 12 C 0.066 3.934 13 H 0.094 0.906 14 N -0.379 5.379 15 C -0.384 4.384 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.575 5.575 19 Si 0.712 3.288 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.179 4.179 24 C 0.038 3.962 25 H 0.093 0.907 26 C -0.221 4.221 27 C 0.020 3.980 28 Cl 0.049 6.951 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.230 0.770 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.575 -0.366 -22.262 22.413 hybrid contribution -0.535 -1.580 0.171 1.677 sum 2.040 -1.947 -22.091 22.270 Atomic orbital electron populations 1.22138 0.92440 1.03361 1.03947 1.21541 0.96320 0.94373 0.83191 1.22139 1.01976 0.93808 1.03948 1.49005 1.37173 1.19994 1.07060 1.77368 1.23672 1.22961 0.84912 1.25023 0.93305 0.90770 1.01500 1.19878 1.13473 1.04399 0.90202 1.16643 0.79726 0.83154 0.80840 1.90710 1.49734 1.46998 1.54796 1.48289 1.51363 1.29757 1.04431 1.23520 0.98821 0.94722 0.88908 1.21165 0.91969 0.92790 0.87524 0.90642 1.42744 1.31928 1.18580 1.44677 1.19072 1.11057 0.94124 1.14163 0.88886 1.24668 0.98462 0.96895 0.98473 1.69693 1.32738 1.27511 1.27528 0.86603 0.81303 0.83065 0.77846 1.20955 1.21684 1.20229 1.23186 1.01394 0.98487 0.94828 1.21820 0.95128 0.87201 0.92013 0.90708 1.22170 1.02105 0.95598 1.02208 1.22005 0.95556 0.89835 0.90622 1.98429 1.84808 1.73973 1.37939 0.90512 0.90278 0.91862 0.87886 0.91860 0.90281 0.90523 0.76987 0.90519 0.91434 0.80213 0.92898 0.89853 0.90709 0.89556 0.92446 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.45 37.16 0.35 -0.90 16 2 C 0.15 1.29 3.66 -67.93 -0.25 1.04 16 3 C -0.16 -1.22 9.44 37.16 0.35 -0.87 16 4 N -0.35 -4.36 3.25 -51.12 -0.17 -4.53 16 5 N -0.27 -3.89 12.33 30.86 0.38 -3.51 16 6 C 0.08 1.20 10.44 -16.98 -0.18 1.02 16 7 C -0.26 -4.03 6.10 -105.02 -0.64 -4.67 16 8 C 0.61 9.89 7.62 -12.58 -0.10 9.79 16 9 O -0.54 -9.54 13.30 5.26 0.07 -9.47 16 10 N -0.60 -9.27 3.24 -164.34 -0.53 -9.81 16 11 C 0.07 1.05 4.73 -3.06 -0.01 1.03 16 12 C 0.18 3.03 3.59 -66.09 -0.24 2.79 16 13 H 0.08 1.31 8.12 -51.93 -0.42 0.88 16 14 N -0.74 -15.80 4.98 -51.65 -0.26 -16.05 16 15 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 16 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 17 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 18 N -0.93 -27.85 13.97 55.49 0.78 -27.07 16 19 Si 0.88 21.07 27.74 -169.99 -4.72 16.35 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.21 6.51 56.52 0.37 -5.84 16 23 C -0.14 -2.00 6.11 -24.58 -0.15 -2.15 16 24 C 0.14 1.96 3.77 -66.42 -0.25 1.71 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.16 -2.18 8.71 37.16 0.32 -1.85 16 27 C 0.18 2.45 7.53 -16.43 -0.12 2.33 16 28 Cl 0.02 0.25 27.00 -51.86 -1.40 -1.15 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.75 7.23 -51.93 -0.38 0.38 16 33 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.21 3.09 4.47 -52.48 -0.23 2.86 16 37 H 0.08 1.30 6.72 -51.93 -0.35 0.95 16 38 H 0.07 1.03 7.00 -51.93 -0.36 0.67 16 39 H 0.36 7.79 5.57 -40.82 -0.23 7.57 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 43 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -31.16 374.34 -7.88 -39.04 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.51 Total: 7.82 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.17 Total: 2.74 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.20 Total: -60.97 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.72 Total: 16.35 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.40 Total: -1.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.16 -7.88 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989238356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.664 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds