Wall clock time and date at job start Sat Apr 11 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47015 * 2 1 4 4 N 1.46499 * 109.47174 * 119.99812 * 2 1 3 5 5 N 1.39931 * 125.74933 * 300.02745 * 4 2 1 6 6 C 1.30416 * 108.95710 * 179.97438 * 5 4 2 7 7 C 1.41341 * 108.04815 * 0.25996 * 6 5 4 8 8 C 1.47302 * 126.43207 * 179.71398 * 7 6 5 9 9 O 1.21622 * 120.00029 * 204.59452 * 8 7 6 10 10 N 1.34777 * 120.00225 * 24.60057 * 8 7 6 11 11 C 1.47422 * 125.64511 * 5.16109 * 10 8 7 12 12 C 1.55131 * 104.72132 * 155.82158 * 11 10 8 13 13 H 1.09009 * 111.18509 * 279.18838 * 12 11 10 14 14 N 1.46503 * 110.93986 * 155.28945 * 12 11 10 15 15 C 1.36932 * 119.99997 * 92.95411 * 14 12 11 16 16 H 1.07998 * 120.00332 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99744 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99845 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47197 * 119.99840 * 19 17 15 22 22 H 1.48505 * 109.46924 * 239.99714 * 19 17 15 23 23 C 1.55153 * 101.48745 * 37.28733 * 12 11 10 24 24 C 1.47024 * 125.64922 * 185.46840 * 10 8 7 25 25 H 1.08996 * 109.87822 * 300.43852 * 24 10 8 26 26 C 1.52999 * 109.88312 * 61.60396 * 24 10 8 27 27 C 1.34350 * 125.75001 * 120.00112 * 4 2 1 28 28 Cl 1.73602 * 126.31705 * 0.04495 * 27 4 2 29 29 H 1.09003 * 109.46719 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46855 * 299.99988 * 1 2 3 31 31 H 1.08995 * 109.47221 * 60.00204 * 1 2 3 32 32 H 1.08995 * 109.47280 * 240.00193 * 2 1 3 33 33 H 1.08992 * 109.47007 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47083 * 300.00374 * 3 2 1 35 35 H 1.09000 * 109.47081 * 59.99530 * 3 2 1 36 36 H 1.07995 * 125.97220 * 180.02562 * 6 5 4 37 37 H 1.09009 * 110.36629 * 274.74632 * 11 10 8 38 38 H 1.08997 * 110.37358 * 37.06670 * 11 10 8 39 39 H 0.96998 * 119.99782 * 272.95338 * 14 12 11 40 40 H 0.96997 * 119.99786 * 179.97438 * 18 17 15 41 41 H 1.08997 * 110.71729 * 205.96809 * 23 12 11 42 42 H 1.09005 * 110.71472 * 82.70111 * 23 12 11 43 43 H 1.09000 * 109.47024 * 58.54555 * 26 24 10 44 44 H 1.08995 * 109.46917 * 178.54730 * 26 24 10 45 45 H 1.09009 * 109.47160 * 298.54795 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7551 -0.3191 2.5194 6 6 2.3486 -1.1591 3.3213 7 6 3.0303 -2.1120 2.5308 8 6 3.8380 -3.2408 3.0240 9 8 4.7144 -3.7126 2.3251 10 7 3.6058 -3.7509 4.2497 11 6 2.5126 -3.3502 5.1540 12 6 2.2954 -4.5774 6.0778 13 1 1.6874 -5.3374 5.5869 14 7 1.6975 -4.1736 7.3529 15 6 0.3373 -4.1967 7.5091 16 1 -0.2947 -4.5123 6.6922 17 6 -0.2292 -3.8136 8.7171 18 7 0.5412 -3.4285 9.7124 19 14 -2.0846 -3.8459 8.9305 20 1 -2.7195 -4.3140 7.6723 21 1 -2.4395 -4.7692 10.0379 22 1 -2.5699 -2.4793 9.2506 23 6 3.7514 -5.0744 6.2788 24 6 4.4044 -4.7945 4.9089 25 1 4.4007 -5.7014 4.3043 26 6 5.8399 -4.3038 5.1072 27 6 2.7941 -1.7875 1.2076 28 17 3.3954 -2.6360 -0.1824 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.3265 -1.1292 4.4006 37 1 2.8049 -2.4786 5.7397 38 1 1.6072 -3.1395 4.5848 39 1 2.2652 -3.8898 8.0864 40 1 0.1453 -3.1604 10.5564 41 1 3.7673 -6.1409 6.5030 42 1 4.2475 -4.5063 7.0658 43 1 5.8331 -3.3937 5.7071 44 1 6.4191 -5.0722 5.6192 45 1 6.2902 -4.0958 4.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989238360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:03 Heat of formation + Delta-G solvation = 50.531054 kcal Electronic energy + Delta-G solvation = -27857.983094 eV Core-core repulsion = 23938.547753 eV Total energy + Delta-G solvation = -3919.435341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61113 -39.59526 -37.25100 -37.02091 -35.97165 -34.17675 -31.94925 -31.37067 -30.80878 -29.62346 -28.36686 -27.69442 -25.48655 -24.16666 -23.60175 -22.88120 -20.93877 -20.59504 -20.11490 -18.85055 -17.54427 -17.32308 -16.55635 -16.00659 -15.65424 -15.24705 -14.90044 -14.61476 -14.34622 -13.90562 -13.78181 -13.63037 -13.33235 -13.08782 -13.01073 -12.72905 -12.64802 -12.60447 -12.22717 -12.18575 -12.14580 -12.02495 -11.76278 -11.61687 -11.37337 -11.13140 -11.01667 -10.88202 -10.75377 -10.61461 -10.26273 -10.00721 -9.78074 -9.61011 -9.58225 -9.02418 -8.80253 -8.24518 -7.09478 -5.86189 -3.16732 1.17789 1.22190 2.13064 2.28906 3.23941 3.38968 3.45644 3.47131 3.48963 4.02684 4.45416 4.49726 4.53852 4.64473 4.81799 5.01794 5.10163 5.14306 5.14742 5.21105 5.30811 5.33611 5.37162 5.45304 5.52837 5.61504 5.71545 5.74139 5.77507 5.81805 5.86579 6.11575 6.17061 6.19553 6.24592 6.37404 6.41231 6.48531 6.51794 6.74905 6.85522 7.30770 7.63916 7.87991 8.31292 8.48929 9.43780 9.97257 10.32320 11.35789 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.003601 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.389719 B = 7774.089032 C = 9785.588941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.161 4.161 4 N -0.349 5.349 5 N -0.270 5.270 6 C 0.092 3.908 7 C -0.259 4.259 8 C 0.606 3.394 9 O -0.544 6.544 10 N -0.604 5.604 11 C 0.070 3.930 12 C 0.173 3.827 13 H 0.068 0.932 14 N -0.711 5.711 15 C -0.248 4.248 16 H 0.073 0.927 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.138 4.138 24 C 0.142 3.858 25 H 0.073 0.927 26 C -0.160 4.160 27 C 0.176 3.824 28 Cl 0.018 6.982 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 5.722 -19.508 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.218 4.218 4 N -0.132 5.132 5 N -0.090 5.090 6 C -0.095 4.095 7 C -0.275 4.275 8 C 0.394 3.606 9 O -0.423 6.423 10 N -0.337 5.337 11 C -0.056 4.056 12 C 0.060 3.940 13 H 0.086 0.914 14 N -0.351 5.351 15 C -0.379 4.379 16 H 0.091 0.909 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.177 4.177 24 C 0.038 3.962 25 H 0.091 0.909 26 C -0.218 4.218 27 C 0.017 3.983 28 Cl 0.046 6.954 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.220 0.780 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.905 6.519 -20.258 21.839 hybrid contribution -0.377 -0.546 0.369 0.759 sum 4.528 5.973 -19.889 21.255 Atomic orbital electron populations 1.22142 0.92406 1.03454 1.03911 1.21542 0.96333 0.94326 0.83188 1.22134 1.01959 0.93840 1.03890 1.48931 1.37554 1.19798 1.06921 1.77323 1.23685 1.22964 0.85033 1.24408 0.93115 0.91151 1.00805 1.19879 1.12999 1.04435 0.90212 1.16670 0.82522 0.81246 0.80144 1.90757 1.33744 1.61752 1.56062 1.48339 1.30696 1.39307 1.15358 1.23666 0.88460 1.01250 0.92188 1.21340 0.91673 0.92844 0.88129 0.91380 1.42325 1.04682 1.78620 1.09428 1.19300 0.82876 1.38041 0.97636 0.90919 1.24750 0.97844 1.01635 0.96160 1.69665 1.33734 1.50496 1.03724 0.86140 0.85302 0.77257 0.77598 1.20478 1.21789 1.21770 1.23052 0.97425 1.02127 0.95068 1.21481 0.90874 0.90358 0.93441 0.90941 1.22123 0.95937 1.01398 1.02352 1.21980 0.95875 0.89886 0.90525 1.98430 1.85147 1.73738 1.38074 0.91770 0.90542 0.90292 0.87858 0.91872 0.90286 0.90602 0.78019 0.91310 0.91069 0.77836 0.93392 0.90348 0.90371 0.92513 0.91906 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.45 37.16 0.35 -0.89 16 2 C 0.15 1.27 3.66 -67.93 -0.25 1.02 16 3 C -0.16 -1.17 9.45 37.16 0.35 -0.82 16 4 N -0.35 -4.29 3.25 -51.11 -0.17 -4.46 16 5 N -0.27 -3.77 12.33 30.87 0.38 -3.39 16 6 C 0.09 1.32 10.17 -16.97 -0.17 1.15 16 7 C -0.26 -3.95 5.78 -105.02 -0.61 -4.56 16 8 C 0.61 10.10 7.51 -12.58 -0.09 10.01 16 9 O -0.54 -10.06 15.30 5.26 0.08 -9.98 16 10 N -0.60 -9.56 3.06 -164.18 -0.50 -10.06 16 11 C 0.07 1.16 4.90 -2.41 -0.01 1.15 16 12 C 0.17 3.15 3.73 -65.66 -0.24 2.91 16 13 H 0.07 1.29 8.09 -51.92 -0.42 0.87 16 14 N -0.71 -16.32 5.24 -51.23 -0.27 -16.59 16 15 C -0.25 -6.42 9.96 -15.06 -0.15 -6.57 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 19 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.14 -2.11 6.12 -24.90 -0.15 -2.26 16 24 C 0.14 2.09 3.43 -66.96 -0.23 1.86 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 C -0.16 -2.17 9.11 37.16 0.34 -1.83 16 27 C 0.18 2.41 7.51 -16.44 -0.12 2.29 16 28 Cl 0.02 0.22 27.34 -51.86 -1.42 -1.20 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.75 7.23 -51.93 -0.38 0.38 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.20 2.72 5.95 -52.49 -0.31 2.41 16 37 H 0.07 1.14 7.30 -51.92 -0.38 0.77 16 38 H 0.07 1.19 6.90 -51.93 -0.36 0.83 16 39 H 0.39 9.46 7.76 -40.82 -0.32 9.15 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.21 7.71 -51.93 -0.40 0.81 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.95 7.07 -51.92 -0.37 0.59 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -30.52 382.29 -8.23 -38.75 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.70 Total: 7.47 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.09 Total: 3.16 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.17 Total: -60.44 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.42 Total: -1.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.52 -8.23 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989238360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.280 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds