Wall clock time and date at job start Sat Apr 11 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47015 * 2 1 4 4 N 1.46499 * 109.47174 * 119.99812 * 2 1 3 5 5 N 1.39931 * 125.74933 * 300.02745 * 4 2 1 6 6 C 1.30416 * 108.95710 * 179.97438 * 5 4 2 7 7 C 1.41341 * 108.04815 * 0.25996 * 6 5 4 8 8 C 1.47302 * 126.43207 * 179.71398 * 7 6 5 9 9 O 1.21622 * 120.00029 * 204.59452 * 8 7 6 10 10 N 1.34777 * 120.00225 * 24.60057 * 8 7 6 11 11 C 1.47422 * 125.64511 * 5.16109 * 10 8 7 12 12 C 1.55131 * 104.72132 * 155.82158 * 11 10 8 13 13 H 1.09009 * 111.18509 * 279.18838 * 12 11 10 14 14 N 1.46503 * 110.93986 * 155.28945 * 12 11 10 15 15 C 1.36932 * 119.99997 * 92.95411 * 14 12 11 16 16 H 1.07998 * 120.00332 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99744 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99845 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47197 * 119.99840 * 19 17 15 22 22 H 1.48505 * 109.46924 * 239.99714 * 19 17 15 23 23 C 1.55153 * 101.48745 * 37.28733 * 12 11 10 24 24 C 1.47024 * 125.64922 * 185.46840 * 10 8 7 25 25 H 1.08996 * 109.87822 * 300.43852 * 24 10 8 26 26 C 1.52999 * 109.88312 * 61.60396 * 24 10 8 27 27 C 1.34350 * 125.75001 * 120.00112 * 4 2 1 28 28 Cl 1.73602 * 126.31705 * 0.04495 * 27 4 2 29 29 H 1.09003 * 109.46719 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46855 * 299.99988 * 1 2 3 31 31 H 1.08995 * 109.47221 * 60.00204 * 1 2 3 32 32 H 1.08995 * 109.47280 * 240.00193 * 2 1 3 33 33 H 1.08992 * 109.47007 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47083 * 300.00374 * 3 2 1 35 35 H 1.09000 * 109.47081 * 59.99530 * 3 2 1 36 36 H 1.07995 * 125.97220 * 180.02562 * 6 5 4 37 37 H 1.09009 * 110.36629 * 274.74632 * 11 10 8 38 38 H 1.08997 * 110.37358 * 37.06670 * 11 10 8 39 39 H 0.96998 * 119.99782 * 272.95338 * 14 12 11 40 40 H 0.96997 * 119.99786 * 179.97438 * 18 17 15 41 41 H 1.08997 * 110.71729 * 205.96809 * 23 12 11 42 42 H 1.09005 * 110.71472 * 82.70111 * 23 12 11 43 43 H 1.09000 * 109.47024 * 58.54555 * 26 24 10 44 44 H 1.08995 * 109.46917 * 178.54730 * 26 24 10 45 45 H 1.09009 * 109.47160 * 298.54795 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7551 -0.3191 2.5194 6 6 2.3486 -1.1591 3.3213 7 6 3.0303 -2.1120 2.5308 8 6 3.8380 -3.2408 3.0240 9 8 4.7144 -3.7126 2.3251 10 7 3.6058 -3.7509 4.2497 11 6 2.5126 -3.3502 5.1540 12 6 2.2954 -4.5774 6.0778 13 1 1.6874 -5.3374 5.5869 14 7 1.6975 -4.1736 7.3529 15 6 0.3373 -4.1967 7.5091 16 1 -0.2947 -4.5123 6.6922 17 6 -0.2292 -3.8136 8.7171 18 7 0.5412 -3.4285 9.7124 19 14 -2.0846 -3.8459 8.9305 20 1 -2.7195 -4.3140 7.6723 21 1 -2.4395 -4.7692 10.0379 22 1 -2.5699 -2.4793 9.2506 23 6 3.7514 -5.0744 6.2788 24 6 4.4044 -4.7945 4.9089 25 1 4.4007 -5.7014 4.3043 26 6 5.8399 -4.3038 5.1072 27 6 2.7941 -1.7875 1.2076 28 17 3.3954 -2.6360 -0.1824 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.3265 -1.1292 4.4006 37 1 2.8049 -2.4786 5.7397 38 1 1.6072 -3.1395 4.5848 39 1 2.2652 -3.8898 8.0864 40 1 0.1453 -3.1604 10.5564 41 1 3.7673 -6.1409 6.5030 42 1 4.2475 -4.5063 7.0658 43 1 5.8331 -3.3937 5.7071 44 1 6.4191 -5.0722 5.6192 45 1 6.2902 -4.0958 4.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989238360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:02 Heat of formation + Delta-G solvation = 32.465958 kcal Electronic energy + Delta-G solvation = -27858.766456 eV Core-core repulsion = 23938.547753 eV Total energy + Delta-G solvation = -3920.218702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67506 -40.88500 -38.60003 -38.07447 -36.76980 -35.93688 -33.29493 -33.01047 -31.82221 -30.72221 -29.99030 -28.28869 -26.75635 -25.86612 -24.79877 -24.00652 -22.20470 -21.75238 -21.33533 -20.04253 -19.22262 -18.50431 -17.79164 -17.31830 -16.72334 -16.66190 -16.13142 -15.80286 -15.42632 -15.28020 -15.18474 -15.03506 -14.53298 -14.26606 -14.13672 -14.07502 -13.56923 -13.42583 -13.35963 -13.30926 -13.07537 -13.02599 -12.98259 -12.86033 -12.74624 -12.45094 -12.28772 -12.14972 -12.04266 -11.98942 -11.90437 -11.70580 -11.43531 -11.01443 -10.84299 -10.58628 -9.93914 -9.55093 -9.00211 -7.91741 -5.20634 0.12391 0.15105 0.98176 1.37211 1.51014 1.52688 1.61136 1.98722 2.23745 2.59274 3.14342 3.40327 3.53148 3.70188 3.80832 3.86577 3.90114 3.94742 4.02567 4.04972 4.22849 4.26631 4.35140 4.52566 4.56992 4.59436 4.62458 4.72091 4.73382 4.79990 4.82389 4.92136 5.02708 5.12930 5.16227 5.18671 5.24273 5.29343 5.43580 5.49624 5.52844 5.58998 6.23627 6.29831 6.56698 7.19318 7.38148 8.09402 8.34211 9.31143 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.003601 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.389719 B = 7774.089032 C = 9785.588941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 C -0.155 4.155 4 N -0.338 5.338 5 N -0.280 5.280 6 C 0.088 3.912 7 C -0.284 4.284 8 C 0.605 3.395 9 O -0.565 6.565 10 N -0.603 5.603 11 C 0.087 3.913 12 C 0.166 3.834 13 H 0.063 0.937 14 N -0.720 5.720 15 C -0.240 4.240 16 H 0.077 0.923 17 C -0.065 4.065 18 N -0.964 5.964 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.296 1.296 22 H -0.295 1.295 23 C -0.124 4.124 24 C 0.141 3.859 25 H 0.076 0.924 26 C -0.152 4.152 27 C 0.175 3.825 28 Cl 0.031 6.969 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.205 0.795 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.378 0.622 40 H 0.251 0.749 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 5.894 -21.404 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 C -0.213 4.213 4 N -0.121 5.121 5 N -0.101 5.101 6 C -0.098 4.098 7 C -0.300 4.300 8 C 0.395 3.605 9 O -0.446 6.446 10 N -0.335 5.335 11 C -0.039 4.039 12 C 0.055 3.945 13 H 0.081 0.919 14 N -0.359 5.359 15 C -0.372 4.372 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.614 5.614 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.163 4.163 24 C 0.038 3.962 25 H 0.094 0.906 26 C -0.210 4.210 27 C 0.015 3.985 28 Cl 0.060 6.940 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.690 6.688 -22.208 23.663 hybrid contribution -0.276 -0.600 0.795 1.034 sum 4.413 6.088 -21.413 22.695 Atomic orbital electron populations 1.22136 0.91459 1.03093 1.04739 1.22032 0.97148 0.95091 0.82278 1.22126 1.01520 0.92875 1.04762 1.49305 1.36388 1.19145 1.07271 1.77280 1.23837 1.23106 0.85895 1.24416 0.93187 0.91153 1.01021 1.19872 1.14207 1.04776 0.91162 1.16849 0.82326 0.81365 0.79958 1.90736 1.34680 1.62635 1.56524 1.48331 1.30522 1.39458 1.15226 1.23310 0.88691 1.00119 0.91785 1.21479 0.93157 0.93337 0.86544 0.91871 1.42403 1.03774 1.78892 1.10814 1.19622 0.84340 1.35901 0.97307 0.90558 1.25423 1.01407 1.02683 0.96313 1.69794 1.35075 1.52536 1.04018 0.85217 0.81195 0.76631 0.77567 1.19236 1.22305 1.22275 1.22948 0.95060 1.02851 0.95443 1.21569 0.91419 0.90316 0.92873 0.90569 1.22047 0.95118 1.01988 1.01803 1.22084 0.95652 0.90138 0.90632 1.98432 1.84976 1.73508 1.37120 0.92690 0.92039 0.87114 0.86114 0.92506 0.87146 0.91969 0.77871 0.91448 0.91381 0.78862 0.94025 0.89027 0.90315 0.92767 0.89689 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.45 71.98 0.68 -1.42 16 2 C 0.13 2.05 3.66 44.99 0.16 2.22 16 3 C -0.16 -1.95 9.45 71.98 0.68 -1.27 16 4 N -0.34 -7.97 3.25 -315.63 -1.03 -9.00 16 5 N -0.28 -7.72 12.33 -56.26 -0.69 -8.41 16 6 C 0.09 2.53 10.17 85.67 0.87 3.40 16 7 C -0.28 -8.56 5.78 -20.12 -0.12 -8.68 16 8 C 0.61 19.92 7.51 86.63 0.65 20.57 16 9 O -0.57 -20.57 15.30 -4.10 -0.06 -20.64 16 10 N -0.60 -18.70 3.06 -791.60 -2.43 -21.12 16 11 C 0.09 2.83 4.90 86.93 0.43 3.26 16 12 C 0.17 5.94 3.73 46.46 0.17 6.12 16 13 H 0.06 2.34 8.09 -2.38 -0.02 2.32 16 14 N -0.72 -32.97 5.24 -316.00 -1.66 -34.63 16 15 C -0.24 -12.39 9.96 84.04 0.84 -11.55 16 16 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 17 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 18 N -0.96 -56.02 13.06 21.65 0.28 -55.74 16 19 Si 0.96 44.33 29.55 68.60 2.03 46.35 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 23 C -0.12 -3.64 6.12 31.78 0.19 -3.45 16 24 C 0.14 3.98 3.43 45.34 0.16 4.13 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 C -0.15 -3.88 9.11 71.98 0.66 -3.23 16 27 C 0.17 4.66 7.51 84.32 0.63 5.29 16 28 Cl 0.03 0.73 27.34 -2.72 -0.07 0.66 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.12 1.45 7.23 -2.39 -0.02 1.43 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.20 5.54 5.95 -2.91 -0.02 5.52 16 37 H 0.07 2.24 7.30 -2.38 -0.02 2.22 16 38 H 0.07 2.27 6.90 -2.39 -0.02 2.25 16 39 H 0.38 18.62 7.76 -92.71 -0.72 17.90 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.08 2.33 7.71 -2.38 -0.02 2.32 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.47 7.07 -2.38 -0.02 1.46 16 Total: -1.00 -64.89 382.29 3.13 -61.75 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.29 Total: 28.47 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.47 Total: 12.31 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.52 Total: -128.91 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.07 Total: 0.66 kcal Total: -64.89 3.13 -61.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989238360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.218 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds